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Genome Overview
| Analysis Name | Vicia sativa cv. Studenica genome v1.0 |
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| Method | Nanopore, Illumina, CHiCAGO, Hi_C (assembled with Canu, Pilon) |
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| Source | GigaDB |
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| Date performed | 2023-06-12 |
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The genome was sequenced and assembled as outlined in Xi H, Nguyen V, Ward C, Liu Z, Searle IR. Chromosome-level assembly of the common vetch (Vicia sativa) reference genome. GigaByte (Hong Kong, China). 2022; 2022:gigabyte38.
About the assembly:
| Number of scaffolds |
18 |
| Total size |
1.65 Gb |
| N50 |
290,752,327 bp |
| Assembly BUSCO score (embryophyta_odb10) |
98.3% |
| Annotation BUSCO score (embryophyta_odb10) |
96.6% |
Functional Analysis
Functional annotation files for the Vicia sativa Studenica genome v1.0 are available for download below. The Vicia sativa Studenica genome v1.0 proteins were analyzed using InterProScan in order to assign InterPro domains and Gene Ontology (GO) terms. Pathways analysis was performed using the KEGG Automatic Annotation Server (KAAS).
Downloads
Gene Prediction
The Vicia sativa Studenica v1.0 genome gene prediction files are available in GFF3 and FASTA format.
Downloads
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