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Genome Overview
| Analysis Name | Pisum sativum Cameor genome v1a |
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| Method | WGS and paired-end (PacBio RSII and Illumina). Assembly with SoapdeNovo2 |
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| Source | URGI |
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| Date performed | 2019-09-06 |
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Publication
Kreplak et al. 2019. A reference genome for pea provides insight into legume genome evolution. Nature Genetics 51:1411-1422.
About the assembly (from Kreplak et al.):
| Length of genome assembly (bp) |
3,920,161,095 |
| Total length of scaffolds - includes super scaffolds (bp) |
3,919,096,294 |
| Number of scaffolds |
24,623 |
| N50 of scaffolds (bp) |
415,940 |
| Number of anchored scaffolds |
10,357 |
| Total length of contigs (bp) |
3,159,358,344 |
| Number of contigs |
218,010 |
| N50 of contigs (bp) |
37,931 |
| GC content (%) |
37.6 |
| Total length of pseudomolecules (bp) |
3,234,741,624 |
| Total length of unanchored scaffolds (bp) |
685,419,471 |
| Number of unanchored scaffolds |
14,266 |
| Total length of retrotransposons (Class I, bp) |
2,457,319,695 |
| Total length of transposons (Class II, bp) |
171,953,356 |
| Total length of genes (bp) |
124,595,921 |
| Number of genes |
44,756 |
| Average gene length (bp) |
2784 |
| Number of mRNA |
57,835 |
| Number of exons |
193,976 |
| Average exon length (bp) |
308.5 |
| Average exon number |
4.33 |
| Average 3′ UTR length (bp) |
443.3 |
| Average 5′ UTR length (bp) |
261.9 |
| Number of annotated genes |
30,687 |
Download
P. sativum Cameor, Genome Assembly v1a Files:
Please see the PCD Data Repository, or click on links below.
Homology Analysis Results:
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