Development of new genetic resources for faba bean (Vicia faba L.) breeding through the discovery of gene-based SNP markers and the construction of a high-density consensus map.

Publication Overview
TitleDevelopment of new genetic resources for faba bean (Vicia faba L.) breeding through the discovery of gene-based SNP markers and the construction of a high-density consensus map.
AuthorsCarrillo-Perdomo E, Vidal A, Kreplak J, Duborjal H, Leveugle M, Duarte J, Desmetz C, Deulvot C, Raffiot B, Marget P, Tayeh N, Pichon JP, Falque M, Martin OC, Burstin J, Aubert G
TypeJournal Article
Journal NameScientific reports
Volume10
Issue1
Year2020
Page(s)6790
CitationCarrillo-Perdomo E, Vidal A, Kreplak J, Duborjal H, Leveugle M, Duarte J, Desmetz C, Deulvot C, Raffiot B, Marget P, Tayeh N, Pichon JP, Falque M, Martin OC, Burstin J, Aubert G. Development of new genetic resources for faba bean (Vicia faba L.) breeding through the discovery of gene-based SNP markers and the construction of a high-density consensus map.. Scientific reports. 2020 Apr 22; 10(1):6790.

Abstract

Faba bean (Vicia faba L.) is a pulse crop of high nutritional value and high importance for sustainable agriculture and soil protection. With the objective of identifying gene-based SNPs, transcriptome sequencing was performed in order to reduce faba bean genome complexity. A set of 1,819 gene-based SNP markers polymorphic in three recombinant line populations was selected to enable the construction of a high-density consensus genetic map encompassing 1,728 markers well distributed in six linkage groups and spanning 1,547.71 cM with an average inter-marker distance of 0.89 cM. Orthology-based comparison of the faba bean consensus map with legume genome assemblies highlighted synteny patterns that partly reflected the phylogenetic relationships among species. Solid blocks of macrosynteny were observed between faba bean and the most closely-related sequenced legume species such as pea, barrel medic or chickpea. Numerous blocks could also be identified in more divergent species such as common bean or cowpea. The genetic tools developed in this work can be used in association mapping, genetic diversity, linkage disequilibrium or comparative genomics and provide a backbone for map-based cloning. This will make the identification of candidate genes of interest more efficient and will accelerate marker-assisted selection (MAS) and genomic-assisted breeding (GAB) in faba bean.

Features
This publication contains information about 2,000 features:
Feature NameUniquenameType
fava_dn_rep_c4147_1870fava_dn_rep_c4147_1870genetic_marker
fava_dn_rep_c4151_522fava_dn_rep_c4151_522genetic_marker
fava_dn_rep_c4152_1185fava_dn_rep_c4152_1185genetic_marker
fava_dn_rep_c4155_380fava_dn_rep_c4155_380genetic_marker
fava_dn_rep_c4160_1136fava_dn_rep_c4160_1136genetic_marker
fava_dn_rep_c4173_807fava_dn_rep_c4173_807genetic_marker
fava_dn_rep_c4180_937fava_dn_rep_c4180_937genetic_marker
fava_dn_rep_c4182_252fava_dn_rep_c4182_252genetic_marker
fava_dn_rep_c4187_666fava_dn_rep_c4187_666genetic_marker
fava_dn_rep_c4190_420fava_dn_rep_c4190_420genetic_marker
fava_dn_rep_c4205_736fava_dn_rep_c4205_736genetic_marker
fava_dn_rep_c421_171fava_dn_rep_c421_171genetic_marker
fava_dn_rep_c4210_530fava_dn_rep_c4210_530genetic_marker
fava_dn_rep_c425_326fava_dn_rep_c425_326genetic_marker
fava_dn_rep_c4252_940fava_dn_rep_c4252_940genetic_marker
fava_dn_rep_c4255_1120fava_dn_rep_c4255_1120genetic_marker
fava_dn_rep_c4261_1685fava_dn_rep_c4261_1685genetic_marker
fava_dn_rep_c427_390fava_dn_rep_c427_390genetic_marker
fava_dn_rep_c4272_908fava_dn_rep_c4272_908genetic_marker
fava_dn_rep_c4275_359fava_dn_rep_c4275_359genetic_marker
fava_dn_rep_c4280_650fava_dn_rep_c4280_650genetic_marker
fava_dn_rep_c4284_567fava_dn_rep_c4284_567genetic_marker
fava_dn_rep_c4286_1258fava_dn_rep_c4286_1258genetic_marker
fava_dn_rep_c4289_392fava_dn_rep_c4289_392genetic_marker
fava_dn_rep_c429_895fava_dn_rep_c429_895genetic_marker

Pages

Featuremaps
This publication contains information about 4 maps:
Map Name
Faba-Hiverna/Nova_Gradiska-F3
Faba-Hiverna/Silian-F3
Faba-Hiverna/Quasar-F3
Faba-INRAE_consensus_map-2020
Stocks
This publication contains information about 7 stocks:
Stock NameUniquenameType
HivernaHivernaaccession
Nova GradiskaNova Gradiskaaccession
SilianSilianaccession
QuasarQuasaraccession
Hiverna/Nova_Gradiska-F3Hiverna/Nova_Gradiska-F3population
Hiverna/Silian-F3Hiverna/Silian-F3population
Hiverna/Quasar-F3Hiverna/Quasar-F3population
Properties
Additional details for this publication include:
Property NameValue
Publication ModelElectronic
ISSN2045-2322
eISSN2045-2322
Publication Date2020 Apr 22
Journal AbbreviationSci Rep
DOI10.1038/s41598-020-63664-7
Elocation10.1038/s41598-020-63664-7
Publication TypeJournal Article
LanguageEnglish
Language Abbreng
Journal CountryEngland