Development of new genetic resources for faba bean (Vicia faba L.) breeding through the discovery of gene-based SNP markers and the construction of a high-density consensus map.

Publication Overview
TitleDevelopment of new genetic resources for faba bean (Vicia faba L.) breeding through the discovery of gene-based SNP markers and the construction of a high-density consensus map.
AuthorsCarrillo-Perdomo E, Vidal A, Kreplak J, Duborjal H, Leveugle M, Duarte J, Desmetz C, Deulvot C, Raffiot B, Marget P, Tayeh N, Pichon JP, Falque M, Martin OC, Burstin J, Aubert G
TypeJournal Article
Journal NameScientific reports
Volume10
Issue1
Year2020
Page(s)6790
CitationCarrillo-Perdomo E, Vidal A, Kreplak J, Duborjal H, Leveugle M, Duarte J, Desmetz C, Deulvot C, Raffiot B, Marget P, Tayeh N, Pichon JP, Falque M, Martin OC, Burstin J, Aubert G. Development of new genetic resources for faba bean (Vicia faba L.) breeding through the discovery of gene-based SNP markers and the construction of a high-density consensus map.. Scientific reports. 2020 Apr 22; 10(1):6790.

Abstract

Faba bean (Vicia faba L.) is a pulse crop of high nutritional value and high importance for sustainable agriculture and soil protection. With the objective of identifying gene-based SNPs, transcriptome sequencing was performed in order to reduce faba bean genome complexity. A set of 1,819 gene-based SNP markers polymorphic in three recombinant line populations was selected to enable the construction of a high-density consensus genetic map encompassing 1,728 markers well distributed in six linkage groups and spanning 1,547.71 cM with an average inter-marker distance of 0.89 cM. Orthology-based comparison of the faba bean consensus map with legume genome assemblies highlighted synteny patterns that partly reflected the phylogenetic relationships among species. Solid blocks of macrosynteny were observed between faba bean and the most closely-related sequenced legume species such as pea, barrel medic or chickpea. Numerous blocks could also be identified in more divergent species such as common bean or cowpea. The genetic tools developed in this work can be used in association mapping, genetic diversity, linkage disequilibrium or comparative genomics and provide a backbone for map-based cloning. This will make the identification of candidate genes of interest more efficient and will accelerate marker-assisted selection (MAS) and genomic-assisted breeding (GAB) in faba bean.

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Pages

Featuremaps
This publication contains information about 4 maps:
Map Name
Faba-Hiverna/Nova_Gradiska-F3
Faba-Hiverna/Silian-F3
Faba-Hiverna/Quasar-F3
Faba-INRAE_consensus_map-2020
Stocks
This publication contains information about 7 stocks:
Stock NameUniquenameType
HivernaHivernaaccession
Nova GradiskaNova Gradiskaaccession
SilianSilianaccession
QuasarQuasaraccession
Hiverna/Nova_Gradiska-F3Hiverna/Nova_Gradiska-F3population
Hiverna/Silian-F3Hiverna/Silian-F3population
Hiverna/Quasar-F3Hiverna/Quasar-F3population
Properties
Additional details for this publication include:
Property NameValue
Publication ModelElectronic
ISSN2045-2322
eISSN2045-2322
Publication Date2020 Apr 22
Journal AbbreviationSci Rep
DOI10.1038/s41598-020-63664-7
Elocation10.1038/s41598-020-63664-7
Publication TypeJournal Article
LanguageEnglish
Language Abbreng
Journal CountryEngland