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Genome Overview
| Analysis Name | Cicer arietinum ICC 4958 genome v2 |
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| Method | whole genome and paired-end sequencing (454/Roche and Illuminia HiSeq1000). NEWBLER v2.6 and SOAP de novo gap closure v1.1 |
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| Source | NIPGR |
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| Date performed | 2015-08-11 |
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Publication
Parween et al. 2015. An advanced draft genome assembly of a desi type chickpea (Cicer arietinum L.). Scientific Reports 5:12806
About the Assembly (from Parween et al.):
| Total size (base) |
510,879,539 |
| Number of scaffolds |
38,513 |
| Minimum scaffold length(bp) |
1000 |
| Maximum scaffold length(bp) |
54,992,815 |
| Average scaffold length(bp) |
13,265 |
| N50 length(bp) |
39,901,017 |
| N50 index |
6 |
| GC content (%) |
27.95 |
| Length of pseudomolecules (bp) |
| Ca_LG_1 |
39,901,017 |
| Ca_LG_2 |
33,233,457 |
| Ca_LG_3 |
42,267,542 |
| Ca_LG_4 |
54,992,815 |
| Ca_LG_5 |
45,819,701 |
| Ca_LG_6 |
54,841,389 |
| Ca_LG_7 |
45,279,478 |
| Ca_LG_8 |
17,664,089 |
| Protein-coding gene annotation |
| Number of genes |
30,257 |
| Total gene length |
91,806,333 |
| Total CDS length |
35,503,303 |
| Number of predicted mRNA |
30,686 |
| Average gene length (bp) |
3034 |
| Average coding sequence (CDS) length (bp) |
1173 |
| Average exon length (bp) |
253 |
| Average intron length (bp) |
432 |
| Average number of exons per gene |
5.1 |
| GC content in CDS |
41.60% |
Download
C. arietinum ICC 4958, Desi Type, Genome Assembly v2.0 Files:
Please see the PCD Data Repository, or click on links below.
Homology Analysis Results:
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