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Genome Overview
Analysis Name | Cicer reticulatum L. PI489777 genome v1 |
Method | whole genome shotgun sequencing (Illumina HiSeq1000). Assembly with ALLPATHS-LG version SL 2.0 |
Source | wild progenitor of chickpea, NIPGR |
Date performed | 2016-08-26 |
Publication
Gupta et al. 2016. Draft genome sequence of Cicer reticulatum L., the wild progenitor of chickpea provides a resource for agronomic trait improvement. DNA Research
About the Assembly (from Gupta et al.):
Total span |
416,658,930 bp |
No. scaffolds |
5,723 |
Max. scaffold length |
58,232,078 bp |
Min. scaffold length |
1,000 bp |
N50 length |
39,846,785 bp |
N50 index |
5 |
Number of annotated genes |
25,680 |
Average gene length |
3,341 bp |
Average coding sequence length |
1,192 bp |
Functionally annotated genes |
25,075 |
Genome assembly based on ICC4958 |
440,184,772 bp |
Genome assembly based on CDC Frontier |
421,850,125 bp |
% GC |
27.55 |
Download
C. reticulatum L. PI489777, Genome Assembly v1 Files:
Please see the PCD Data Repository, or click on links below.
Homology Analysis Results:
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