CcM00176 | PulseDB

Marker Overview

Marker Overview


Name	CcM00176
Genbank ID	FI192943
Type	SSR
Species	Cajanus cajan
Repeat Motif	(GA)10
Primer 1	CcM00176.Forward: GAAATTAAGAAGCGGCGATG
Primer 2	CcM00176.Reverse: AACCTTATTGCCACGCAAAC
Product Length	235
Publication	[view all]
Contact	Douglas Cook

Contact

Name

Details

Douglas Cook

First name:	Douglas
Last name:	Cook
Institution:	University of California, Davis
Country:	United States
Email:	drcook@ucdavis.edu
Last update:	Mar 2011

References

External references for this genetic_marker


Database	Accession
DB:genbank	FI192943

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Chr_11-CM003613.1	supercontig	Chr_11-CM003613.1:13434631..13434865 .	Cajanus cajan Asha genome v1.0	PCD marker alignment to genome using primer sequences

Publications


Year	Publication
2011	Bohra A, Dubey A, Saxena RK, Penmetsa RV, Poornima KN, Kumar N, Farmer AD, Srivani G, Upadhyaya HD, Gothalwal R, Ramesh S, Singh D, Saxena K, Kishor PBK, Singh NK, Town CD, May GD, Cook DR, Varshney RK. Analysis of BAC-end sequences (BESs) and development of BES-SSR markers for genetic mapping and hybrid purity assessment in pigeonpea (Cajanus spp.). BMC Plant Biology. 2011; 11:56.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pigeon_pea-ICRISAT_consensus_map-2012	LG02	N/A	63.76	CcM0176	View