Pisum_sativum_v1_Contig1284

Contig Overview
NamePisum_sativum_v1_Contig1284
Unique NamePisum_sativum_v1_Contig1284
Typecontig
OrganismPisum sativum (pea)
Sequence length676
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
FG533111ESTFG533111:1..258 +
EX570962ESTEX570962:13..552 +
FG530660ESTFG530660:62..636 +
FG530627ESTFG530627:6..676 +
Unigenes
This contig is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Pisum sativum unigene v2Pisum sativum unigene v2contig
Pisum sativum unigene v1Pisum sativum unigene v1contig
Analyses
This contig is derived from or has results from the following analyses
Analysis NameDate Performed
Pisum sativum unigene v12010-12-27
Pisum sativum unigene v22011-03-01
Homology Analysis: Pisum sativum unigene v2 vs Medicago proteins2011-04-21
Relationships

The following EST feature(s) are a part of this contig:

Feature NameUnique NameSpeciesType
FG533111FG533111Pisum sativumEST
EX570962EX570962Pisum sativumEST
FG530660FG530660Pisum sativumEST
FG530627FG530627Pisum sativumEST


Homology
[Close]
BLAST of Pisum_sativum_v1_Contig1284 vs. Medicago proteins
Match: IMGA|Medtr2g006440.1 (ATP-dependent DNA helicase Q1 (AHRD V1 *-** P46063); contains Interpro domain(s) IPR004589 DNA helicase, ATP-dependent, RecQ type chr02_pseudomolecule_IMGAG_V3.5 576238-583843 E EGN_Mt100125 20100825)

HSP 1 Score: 136.346 bits (342), Expect = 1.217e-32
Identity = 64/83 (77.11%), Postives = 73/83 (87.95%), Query Frame = 3 
Query:    3 ANRDPDSNAEDDEALIQITGRTKKRTVKRQIRKVVIYDSEEEEDYFHGCLDEDLDCVNIDNIVLDKAPGTNPAGRVLPQWTVS 251
            ANR PDSN EDD+ALI+ TGR+KKRTVKRQI+K  IY+SEEE DY+HGCLDEDLDC++IDN+VLDK  GTN AGRVLPQWT S
Sbjct: 1075 ANRTPDSNGEDDDALIKSTGRSKKRTVKRQIKKAEIYESEEE-DYYHGCLDEDLDCIDIDNVVLDKLTGTNAAGRVLPQWTAS 1156
The following BLAST results are available for this feature:
BLAST of Pisum_sativum_v1_Contig1284 vs. Medicago proteins
Analysis Date: 2011-04-21 (Homology Analysis: Pisum sativum unigene v2 vs Medicago proteins)
Total hits: 1
Match NameE-valueIdentityDescription
IMGA|Medtr2g006440.11.217e-3277.11ATP-dependent DNA helicase Q1 (AHRD V1 *-** P46063... [more]
back to top
Properties
Property NameValue
Singlet in analysisPisum sativum unigene v2
Sequences
The following sequences are available for this feature:

contig sequence

>Pisum_sativum_v1_Contig1284 ID=Pisum_sativum_v1_Contig1284; Name=Pisum_sativum_v1_Contig1284; organism=Pisum sativum; type=contig; length=676bp
AGGCAAACAGAGACCCGGATTCAAATGCTGAGGATGATGAGGCCTTAATC
CAAATTACTGGTCGCACCAAGAAAAGGACGGTAAAGAGACAAATTAGAAA
GGTTGTGATTTATGATTCAGAAGAAGAGGAGGATTATTTCCATGGGTGCC
TTGATGAGGACCTAGACTGTGTCAACATTGATAACATCGTATTAGATAAA
GCACCTGGTACAAATCCTGCAGGAAGAGTACTACCTCAATGGACAGTATC
TTGATACGGTGTATGTTGATTGTCTTATAATTATTGTATTGGTCCCTTCA
CGATATGAATGCTATTGGGATTTTCTTGGATCAACCTTCAGTAATTTAAG
GTTGCTGGAACAGAATCTTGTACCAACGACAGGGCATTGCAGGGAAGATG
AATGGTAAAAGCAGATCAGTTAGAAAAACTGTGGATAACTGGATGGCAAT
GAAAGATACAAATAAAGATATTTTCTTTCTAATTTATTTCTGGCGTCAAT
GTAATTGATTGACGCATGTGAAAAAGTGCGATTTCAATTTGGAGATAATG
TATATAGTTGGTAGTCGATATAAATTGGAATTTGCAATTATTCTATTAGT
CTTGATAGTCTAATTATTTCTAATTCAGAATACAGTAATATTTAACTAAA
CTTAGTCAGAGAGAGACTGGGTTTAA
back to top