Pisum_sativum_v1_Contig1296

Contig Overview
NamePisum_sativum_v1_Contig1296
Unique NamePisum_sativum_v1_Contig1296
Typecontig
OrganismPisum sativum (pea)
Sequence length669
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
FG533057ESTFG533057:1..520 +Pisum sativum unigene v1n/a
AM162100ESTAM162100:228..495 -Pisum sativum unigene v1n/a
EX568963ESTEX568963:1..620 +Pisum sativum unigene v1n/a
EX569635ESTEX569635:205..669 +Pisum sativum unigene v1n/a
Unigenes
This contig is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Pisum sativum unigene v1Pisum sativum unigene v1contig
Analyses
This contig is derived from or has results from the following analyses
Analysis NameDate Performed
Pisum sativum unigene v12010-12-27
Homology Analysis: Pisum sativum unigene v1 vs Trembl2010-12-28
Homology Analysis: Pisum sativum unigene v1 vs Swissprot2010-12-28
Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide2011-02-03
InterProScan analysis for Pisum sativum unigene v12010-12-29
Relationships

The following EST feature(s) are a part of this contig:

Feature NameUnique NameSpeciesType
FG533057FG533057Pisum sativumEST
AM162100AM162100Pisum sativumEST
EX568963EX568963Pisum sativumEST
EX569635EX569635Pisum sativumEST


Homology
[Close]
BLAST of Pisum_sativum_v1_Contig1296 vs. SwissProt
Match: TRL4_ARATH (Thioredoxin-like 4, chloroplastic OS=Arabidopsis thaliana GN=At1g07700 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.035e-31
Identity = 64/81 (79.01%), Postives = 75/81 (92.59%), Query Frame = 2 
Query:    2 YIEQGFAKLCKKSGSHDAPVIFLKHNVIDEYDEESEVADRLRIRAVPLFHFYKDGKLLEAFPTRDKERIIAAILKYSSLEA 244
            YIEQGF+KLCK+SG  +APVIFLKHNV+DEYDE+SEVA+RLRI+AVPLFHFYK+G LLE+F TRDKERI AAILKY+S E+
Sbjct:  124 YIEQGFSKLCKQSGDQEAPVIFLKHNVVDEYDEQSEVAERLRIKAVPLFHFYKNGVLLESFATRDKERIDAAILKYTSSES 204
[Close]
BLAST of Pisum_sativum_v1_Contig1296 vs. SwissProt
Match: TRL4_ORYSJ (Thioredoxin-like 4, chloroplastic OS=Oryza sativa subsp. japonica GN=Os02g0567100 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.275e-29
Identity = 62/78 (79.49%), Postives = 69/78 (88.46%), Query Frame = 2 
Query:    2 YIEQGFAKLCKKSGSHDAPVIFLKHNVIDEYDEESEVADRLRIRAVPLFHFYKDGKLLEAFPTRDKERIIAAILKYSS 235
            YIEQGF KLCK SG H + V+FLKHNVIDEYDE+SEVADRLRI+ VPLFHFYK+G LLEAF TRDKERIIAAI KY++
Sbjct:  122 YIEQGFMKLCKGSGDHGSSVVFLKHNVIDEYDEQSEVADRLRIKVVPLFHFYKNGVLLEAFATRDKERIIAAIQKYTA 199
[Close]
BLAST of Pisum_sativum_v1_Contig1296 vs. TrEMBL
Match: D7KH47_ARALY (Predicted protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_678390 PE=4 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.447e-30
Identity = 64/81 (79.01%), Postives = 75/81 (92.59%), Query Frame = 2 
Query:    2 YIEQGFAKLCKKSGSHDAPVIFLKHNVIDEYDEESEVADRLRIRAVPLFHFYKDGKLLEAFPTRDKERIIAAILKYSSLEA 244
            YIEQGF+KLCK+SG  +APVIFLKHNV+DEYDE+SEVA+RLRI+AVPLFHFYK+G LLE+F TRDKERI AAILKY+S E+
Sbjct:  126 YIEQGFSKLCKQSGDQEAPVIFLKHNVVDEYDEQSEVAERLRIKAVPLFHFYKNGVLLESFATRDKERIDAAILKYTSSES 206
[Close]
BLAST of Pisum_sativum_v1_Contig1296 vs. TrEMBL
Match: B8AEC5_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_07725 PE=4 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.207e-29
Identity = 63/78 (80.77%), Postives = 70/78 (89.74%), Query Frame = 2 
Query:    2 YIEQGFAKLCKKSGSHDAPVIFLKHNVIDEYDEESEVADRLRIRAVPLFHFYKDGKLLEAFPTRDKERIIAAILKYSS 235
            YIEQGF KLCK SG H +PV+FLKHNVIDEYDE+SEVADRLRI+ VPLFHFYK+G LLEAF TRDKERIIAAI KY++
Sbjct:  122 YIEQGFMKLCKGSGDHGSPVVFLKHNVIDEYDEQSEVADRLRIKVVPLFHFYKNGVLLEAFATRDKERIIAAIQKYTA 199
[Close]
BLAST of Pisum_sativum_v1_Contig1296 vs. TrEMBL
Match: B9MVQ7_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_677848 PE=4 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.764e-29
Identity = 63/83 (75.90%), Postives = 72/83 (86.75%), Query Frame = 2 
Query:    2 YIEQGFAKLCKKSGSHDAPVIFLKHNVIDEYDEESEVADRLRIRAVPLFHFYKDGKLLEAFPTRDKERIIAAILKYSSLEAED 250
            YIEQGFAKLCK SG  +A V FLKHNVIDEYDE+SEVA+RLRI+ VPLFHFYK G L+E+FPTRDKERI+ AILKY+S  A+D
Sbjct:   89 YIEQGFAKLCKGSGDQEAAVTFLKHNVIDEYDEQSEVAERLRIKTVPLFHFYKKGVLVESFPTRDKERILGAILKYTSPAAQD 171
[Close]
BLAST of Pisum_sativum_v1_Contig1296 vs. TrEMBL
Match: B9R7C2_RICCO (Thioredoxin, putative OS=Ricinus communis GN=RCOM_1590520 PE=4 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 4.916e-29
Identity = 63/78 (80.77%), Postives = 71/78 (91.03%), Query Frame = 2 
Query:    2 YIEQGFAKLCKKSGSHDAPVIFLKHNVIDEYDEESEVADRLRIRAVPLFHFYKDGKLLEAFPTRDKERIIAAILKYSS 235
            YIEQGFAKLC+ +G ++A VIFLKHNVIDEYDE+SEVA+RLRI+ VPLFHFYK G LLEAFPTRDKERI A+ILKYSS
Sbjct:  137 YIEQGFAKLCRGAGDNEASVIFLKHNVIDEYDEQSEVAERLRIKTVPLFHFYKGGVLLEAFPTRDKERITASILKYSS 214
[Close]
BLAST of Pisum_sativum_v1_Contig1296 vs. TrEMBL
Match: C5XVK7_SORBI (Putative uncharacterized protein Sb04g023500 OS=Sorghum bicolor GN=Sb04g023500 PE=4 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.095e-28
Identity = 62/82 (75.61%), Postives = 71/82 (86.59%), Query Frame = 2 
Query:    2 YIEQGFAKLCKKSGSHDAPVIFLKHNVIDEYDEESEVADRLRIRAVPLFHFYKDGKLLEAFPTRDKERIIAAILKYSSLEAE 247
            YIE+GF +LCK SG   APV+FLKHNVIDEYDE+SEVADRLRI+ VPLFHFYKDG L+E+F TRDKERI+AAI KY+S E E
Sbjct:  125 YIEKGFIRLCKGSGDDGAPVVFLKHNVIDEYDEQSEVADRLRIKIVPLFHFYKDGVLVESFATRDKERILAAIQKYTSAEPE 206
[Close]
BLAST of Pisum_sativum_v1_Contig1296 vs. TrEMBL
Match: B6U3H2_MAIZE (Thioredoxin-like 2 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.187e-28
Identity = 61/82 (74.39%), Postives = 70/82 (85.37%), Query Frame = 2 
Query:    2 YIEQGFAKLCKKSGSHDAPVIFLKHNVIDEYDEESEVADRLRIRAVPLFHFYKDGKLLEAFPTRDKERIIAAILKYSSLEAE 247
            YIE+ F +LCK SG   APV+FLKHNVIDEYDE+SEVADRLRI+ VPLFHFY DG L+E+FPTRDKERIIA I KY+S+E E
Sbjct:  128 YIEKAFTRLCKGSGDDGAPVVFLKHNVIDEYDEQSEVADRLRIKIVPLFHFYVDGVLVESFPTRDKERIIAVIRKYTSVEPE 209
[Close]
BLAST of Pisum_sativum_v1_Contig1296 vs. TrEMBL
Match: A9SD28_PHYPA (Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_18125 PE=4 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.532e-22
Identity = 47/76 (61.84%), Postives = 65/76 (85.53%), Query Frame = 2 
Query:    2 YIEQGFAKLCKKSGSHDAPVIFLKHNVIDEYDEESEVADRLRIRAVPLFHFYKDGKLLEAFPTRDKERIIAAILKY 229
            YIE+GF KLCK +G+ +A V+FLKHNV DEY+E+S++A++ RI+ VPLFHFYK+G+L+E+FPTRDK RI+  I K+
Sbjct:   50 YIEKGFQKLCKGAGNGEASVVFLKHNVFDEYEEQSDIAEKFRIKVVPLFHFYKNGELVESFPTRDKARILETIYKH 125
[Close]
BLAST of Pisum_sativum_v1_Contig1296 vs. TrEMBL
Match: A9TNI9_PHYPA (Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_47917 PE=4 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.212e-21
Identity = 46/76 (60.53%), Postives = 64/76 (84.21%), Query Frame = 2 
Query:    2 YIEQGFAKLCKKSGSHDAPVIFLKHNVIDEYDEESEVADRLRIRAVPLFHFYKDGKLLEAFPTRDKERIIAAILKY 229
            YIE+GF KLCK +G+ +A V+F+KHNV++EYDE+S++A+RLRI+ VPLFHFYK+G L+ +F TRDK RI+  I K+
Sbjct:   47 YIEKGFQKLCKGAGNGEASVVFVKHNVVNEYDEQSDIAERLRIKIVPLFHFYKNGNLVASFATRDKARILQTIYKH 122
[Close]
BLAST of Pisum_sativum_v1_Contig1296 vs. TrEMBL
Match: D7LFJ2_ARALY (Thioredoxin family protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_481585 PE=4 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.939e-13
Identity = 34/44 (77.27%), Postives = 42/44 (95.45%), Query Frame = 2 
Query:    2 YIEQGFAKLCKKSGSHDAPVIFLKHNVIDEYDEESEVADRLRIR 133
            YIEQGF+K+CK+SG  +APVIFLKHNV+DEYDE+SEVA+RLRI+
Sbjct:  126 YIEQGFSKVCKQSGDQEAPVIFLKHNVVDEYDEQSEVAERLRIK 169
[Close]
BLAST of Pisum_sativum_v1_Contig1296 vs. TrEMBL
Match: D7KXQ9_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_338394 PE=4 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.217e-11
Identity = 32/42 (76.19%), Postives = 40/42 (95.24%), Query Frame = 2 
Query:    8 EQGFAKLCKKSGSHDAPVIFLKHNVIDEYDEESEVADRLRIR 133
            +QGF+KLCK+SG  +APVIFLKHNV+DEYDE+SEVA+RLRI+
Sbjct:   50 KQGFSKLCKQSGDQEAPVIFLKHNVVDEYDEQSEVAERLRIK 91
[Close]
BLAST of Pisum_sativum_v1_Contig1296 vs. TAIR peptide
Match: AT1G07700.3 (| Symbols: | Thioredoxin superfamily protein | chr1:2380297-2381127 FORWARD LENGTH=217)

HSP 1 Score: 135.191 bits (339), Expect = 3.087e-32
Identity = 64/81 (79.01%), Postives = 75/81 (92.59%), Query Frame = 2 
Query:    2 YIEQGFAKLCKKSGSHDAPVIFLKHNVIDEYDEESEVADRLRIRAVPLFHFYKDGKLLEAFPTRDKERIIAAILKYSSLEA 244
            YIEQGF+KLCK+SG  +APVIFLKHNV+DEYDE+SEVA+RLRI+AVPLFHFYK+G LLE+F TRDKERI AAILKY+S E+
Sbjct:  137 YIEQGFSKLCKQSGDQEAPVIFLKHNVVDEYDEQSEVAERLRIKAVPLFHFYKNGVLLESFATRDKERIDAAILKYTSSES 217
[Close]
BLAST of Pisum_sativum_v1_Contig1296 vs. TAIR peptide
Match: AT1G07700.1 (| Symbols: | Thioredoxin superfamily protein | chr1:2380214-2381127 FORWARD LENGTH=204)

HSP 1 Score: 135.191 bits (339), Expect = 3.087e-32
Identity = 64/81 (79.01%), Postives = 75/81 (92.59%), Query Frame = 2 
Query:    2 YIEQGFAKLCKKSGSHDAPVIFLKHNVIDEYDEESEVADRLRIRAVPLFHFYKDGKLLEAFPTRDKERIIAAILKYSSLEA 244
            YIEQGF+KLCK+SG  +APVIFLKHNV+DEYDE+SEVA+RLRI+AVPLFHFYK+G LLE+F TRDKERI AAILKY+S E+
Sbjct:  124 YIEQGFSKLCKQSGDQEAPVIFLKHNVVDEYDEQSEVAERLRIKAVPLFHFYKNGVLLESFATRDKERIDAAILKYTSSES 204
[Close]
BLAST of Pisum_sativum_v1_Contig1296 vs. TAIR peptide
Match: AT1G07700.2 (| Symbols: | Thioredoxin superfamily protein | chr1:2380214-2380939 FORWARD LENGTH=171)

HSP 1 Score: 85.1149 bits (209), Expect = 3.663e-17
Identity = 37/48 (77.08%), Postives = 45/48 (93.75%), Query Frame = 2 
Query:    2 YIEQGFAKLCKKSGSHDAPVIFLKHNVIDEYDEESEVADRLRIRAVPL 145
            YIEQGF+KLCK+SG  +APVIFLKHNV+DEYDE+SEVA+RLRI+ +PL
Sbjct:  124 YIEQGFSKLCKQSGDQEAPVIFLKHNVVDEYDEQSEVAERLRIKVIPL 171
The following BLAST results are available for this feature:
BLAST of Pisum_sativum_v1_Contig1296 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Swissprot)
Total hits: 2
Match NameE-valueIdentityDescription
TRL4_ARATH3.035e-3179.01Thioredoxin-like 4, chloroplastic OS=Arabidopsis t... [more]
TRL4_ORYSJ1.275e-2979.49Thioredoxin-like 4, chloroplastic OS=Oryza sativa ... [more]
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BLAST of Pisum_sativum_v1_Contig1296 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
D7KH47_ARALY4.447e-3079.01Predicted protein OS=Arabidopsis lyrata subsp. lyr... [more]
B8AEC5_ORYSI2.207e-2980.77Putative uncharacterized protein OS=Oryza sativa s... [more]
B9MVQ7_POPTR3.764e-2975.90Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
B9R7C2_RICCO4.916e-2980.77Thioredoxin, putative OS=Ricinus communis GN=RCOM_... [more]
C5XVK7_SORBI1.095e-2875.61Putative uncharacterized protein Sb04g023500 OS=So... [more]
B6U3H2_MAIZE3.187e-2874.39Thioredoxin-like 2 OS=Zea mays PE=2 SV=1[more]
A9SD28_PHYPA1.532e-2261.84Predicted protein (Fragment) OS=Physcomitrella pat... [more]
A9TNI9_PHYPA2.212e-2160.53Predicted protein (Fragment) OS=Physcomitrella pat... [more]
D7LFJ2_ARALY4.939e-1377.27Thioredoxin family protein OS=Arabidopsis lyrata s... [more]
D7KXQ9_ARALY1.217e-1176.19Putative uncharacterized protein OS=Arabidopsis ly... [more]
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BLAST of Pisum_sativum_v1_Contig1296 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide)
Total hits: 3
Match NameE-valueIdentityDescription
AT1G07700.33.087e-3279.01| Symbols: | Thioredoxin superfamily protein | ch... [more]
AT1G07700.13.087e-3279.01| Symbols: | Thioredoxin superfamily protein | ch... [more]
AT1G07700.23.663e-1777.08| Symbols: | Thioredoxin superfamily protein | ch... [more]
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InterPro
Analysis Name: InterProScan analysis for Pisum sativum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005746ThioredoxinPANTHERPTHR10438THIOREDOXIN-RELATEDcoord: 30..83
score: 0.
IPR012335Thioredoxin foldGENE3D3.40.30.10no descriptioncoord: 4..75
score: 8.4
IPR012336Thioredoxin-like foldSUPERFAMILY52833Thioredoxin-likecoord: 20..81
score: 3.1
NoneNo IPR availableSEGsegsegcoord: 11..23
score

Sequences
The following sequences are available for this feature:

contig sequence

>Pisum_sativum_v1_Contig1296 ID=Pisum_sativum_v1_Contig1296; Name=Pisum_sativum_v1_Contig1296; organism=Pisum sativum; type=contig; length=669bp
GTACATAGAACAGGGTTTTGCAAAGTTGTGCAAGAAATCTGGTAGCCATG
ATGCTCCTGTTATCTTTCTAAAGCATAATGTAATTGATGAGTATGATGAA
GAGTCCGAGGTTGCAGATCGACTTAGAATCAGGGCAGTGCCTCTTTTCCA
CTTCTACAAAGATGGGAAACTGCTGGAAGCATTCCCAACCAGAGACAAAG
AAAGGATTATTGCTGCCATACTCAAGTACTCATCTCTTGAAGCAGAAGAT
ATTTTGAGCTAACTTCAAGATCAAGGGATAGTGTTACGGCATCTCGCAAC
TGTTGTATGGATAAATTGGTCTTTGTGTGCAACAACATTGTATGGATAAA
TTGGTCTTTGTGTGCAACAACATTCTGTATTTATACTTGGAATAAAACAC
TGTAGTCCTCCTCTCAGCCTGATTCACTTTGTTGGGAAGTAACCAGTGGA
GTTTTTAATGTCCATCTCCACCAGACATTGTAGAAGAAAAGGAGTACTAT
CCTTGAATGTTTGGGGATATACTAATAGATGAGACTGGCTGTGAAAGTGA
TTCAAAACTCAATTGAGTAGGTGTAAATTTGATTTCATTTATGTTGAAAA
TAAAATATATATTTTGATTATCCTTTTATGTAATAATTCAATTTAGGTTC
TGATTGTTTTATTTCTCCT
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: Biological Process
TermDefinition
GO:0006662glycerol ether metabolic process
GO:0045454cell redox homeostasis
Vocabulary: Molecular Function
TermDefinition
GO:0009055electron transfer activity
GO:0015035protein-disulfide reductase activity
Vocabulary: INTERPRO
TermDefinition
IPR005746Thioredoxin
IPR012335Thioredoxin fold
IPR012336Thioredoxin-like_fold