Pisum_sativum_v1_Contig1452

Contig Overview
NamePisum_sativum_v1_Contig1452
Unique NamePisum_sativum_v1_Contig1452
Typecontig
OrganismPisum sativum (pea)
Sequence length660
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CD858736ESTCD858736:92..337 +
CD858541ESTCD858541:92..337 +
FG537567ESTFG537567:1..520 -
FG538138ESTFG538138:20..660 -
Unigenes
This contig is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Pisum sativum unigene v1Pisum sativum unigene v1contig
Analyses
This contig is derived from or has results from the following analyses
Analysis NameDate Performed
Pisum sativum unigene v12010-12-27
InterProScan analysis for Pisum sativum unigene v12010-12-29
Relationships

The following EST feature(s) are a part of this contig:

Feature NameUnique NameSpeciesType
CD858736CD858736Pisum sativumEST
CD858541CD858541Pisum sativumEST
FG537567FG537567Pisum sativumEST
FG538138FG538138Pisum sativumEST


InterPro
Analysis Name: InterProScan analysis for Pisum sativum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 40..54
score
NoneNo IPR availableSEGsegsegcoord: 23..35
score
NoneNo IPR availableSEGsegsegcoord: 29..68
score
NoneNo IPR availableSEGsegsegcoord: 3..73
score
NoneNo IPR availableSUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 50..93
score: 3.3
NoneNo IPR availableSEGsegsegcoord: 39..52
score
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 74..90
score: 1.1
IPR001878Zinc finger, CCHC-typeSMARTSM00343no descriptioncoord: 74..90
score: 3.3
IPR001878Zinc finger, CCHC-typePROFILEPS50158ZF_CCHCcoord: 75..90
score: 10
IPR013084Zinc finger, CCHC retroviral-typeGENE3D4.10.60.10no descriptioncoord: 65..93
score: 3.2

Sequences
The following sequences are available for this feature:

contig sequence

>Pisum_sativum_v1_Contig1452 ID=Pisum_sativum_v1_Contig1452; Name=Pisum_sativum_v1_Contig1452; organism=Pisum sativum; type=contig; length=660bp
AATAAGAAGGCATTTCTATAAAACTACTCCTGTCTTTTTGGAAATGTGAA
GGTTCAGGCCGGCGATAAACATTGCGGATATACAGACAAGTTAGCATCAT
ACAGTTAACGTACTGGCAGAATATCACTGCCGCAATGCAACCGGTCAATC
AATTATACAACGAGAAAGAAAGGAAAGAAGAAAAAAAAAGCCAAGACCAA
ATGCAGGAACTTCTATGGGGAATGGATATAACCAAATAGGAAAGATGTAA
AAGCAGCTTTGATTCTGTAAATCTTTCCGAAAGCACATTCAATTTCTTGA
ACCATTTAGGCCATCACCAATGGCAGCTCAATTCTAGTACAAGGTGACAC
CAAATTGAATGTGTTCCAACTAAAAAAAGTCTTGTTTTTTTGGGACACTC
TGATGCCCGATGACCTGATTGGCCGCAATTAAAACAGGCCCCTCTGTTTA
ACGATGAAGATCTGTTTGGCGACGAAGACCTGTTTGTTGACGAATATCCG
CTTGACCGTCTACCTCCACTTGACCAGTCATCCCCATCTGATCGTCTGCC
TCCACTTGACCAGTCATCCCCACTTGACCAGTCATCCCCACCTGATCGTC
TACCTCCACTTGACCAGGCATCCCCACCTGATCGTCTACCTCCACTTGAC
CAGGCATCCC
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0008270zinc ion binding
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
IPR013084Zinc finger, CCHC retroviral-type