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Contig Overview
Name | Pisum_sativum_v1_Contig1452 |
Unique Name | Pisum_sativum_v1_Contig1452 |
Type | contig |
Organism | Pisum sativum (pea) |
Sequence length | 660 |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
CD858736 | EST | CD858736:92..337 + |
CD858541 | EST | CD858541:92..337 + |
FG537567 | EST | FG537567:1..520 - |
FG538138 | EST | FG538138:20..660 - |
Unigenes
This contig is part of the following unigenes:
Analyses
This contig is derived from or has results from the following analyses
Relationships
The following EST feature(s) are a part of this contig:
InterPro
Analysis Name: InterProScan analysis for Pisum sativum unigene v1
Date Performed: 2010-12-29
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
None | No IPR available | SEG | seg | seg | coord: 40..54 score |
None | No IPR available | SEG | seg | seg | coord: 23..35 score |
None | No IPR available | SEG | seg | seg | coord: 29..68 score |
None | No IPR available | SEG | seg | seg | coord: 3..73 score |
None | No IPR available | SUPERFAMILY | 57756 | Retrovirus zinc finger-like domains | coord: 50..93 score: 3.3 |
None | No IPR available | SEG | seg | seg | coord: 39..52 score |
IPR001878 | Zinc finger, CCHC-type | PFAM | PF00098 | zf-CCHC | coord: 74..90 score: 1.1 |
IPR001878 | Zinc finger, CCHC-type | SMART | SM00343 | no description | coord: 74..90 score: 3.3 |
IPR001878 | Zinc finger, CCHC-type | PROFILE | PS50158 | ZF_CCHC | coord: 75..90 score: 10 |
IPR013084 | Zinc finger, CCHC retroviral-type | GENE3D | 4.10.60.10 | no description | coord: 65..93 score: 3.2 |
Sequences
The
following sequences are available for this feature:
contig sequence >Pisum_sativum_v1_Contig1452 ID=Pisum_sativum_v1_Contig1452; Name=Pisum_sativum_v1_Contig1452; organism=Pisum sativum; type=contig; length=660bp AATAAGAAGGCATTTCTATAAAACTACTCCTGTCTTTTTGGAAATGTGAA GGTTCAGGCCGGCGATAAACATTGCGGATATACAGACAAGTTAGCATCAT ACAGTTAACGTACTGGCAGAATATCACTGCCGCAATGCAACCGGTCAATC AATTATACAACGAGAAAGAAAGGAAAGAAGAAAAAAAAAGCCAAGACCAA ATGCAGGAACTTCTATGGGGAATGGATATAACCAAATAGGAAAGATGTAA AAGCAGCTTTGATTCTGTAAATCTTTCCGAAAGCACATTCAATTTCTTGA ACCATTTAGGCCATCACCAATGGCAGCTCAATTCTAGTACAAGGTGACAC CAAATTGAATGTGTTCCAACTAAAAAAAGTCTTGTTTTTTTGGGACACTC TGATGCCCGATGACCTGATTGGCCGCAATTAAAACAGGCCCCTCTGTTTA ACGATGAAGATCTGTTTGGCGACGAAGACCTGTTTGTTGACGAATATCCG CTTGACCGTCTACCTCCACTTGACCAGTCATCCCCATCTGATCGTCTGCC TCCACTTGACCAGTCATCCCCACTTGACCAGTCATCCCCACCTGATCGTC TACCTCCACTTGACCAGGCATCCCCACCTGATCGTCTACCTCCACTTGAC CAGGCATCCC back to top
Annotated Terms
The
following terms have been associated with
this contig:
Vocabulary: Molecular Function
Term | Definition |
GO:0003676 | nucleic acid binding |
GO:0008270 | zinc ion binding |
Vocabulary: INTERPRO
Term | Definition |
IPR001878 | Znf_CCHC |
IPR013084 | Zinc finger, CCHC retroviral-type |
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