Pisum_sativum_v1_Contig1635

Contig Overview
NamePisum_sativum_v1_Contig1635
Unique NamePisum_sativum_v1_Contig1635
Typecontig
OrganismPisum sativum (pea)
Sequence length636
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
FG531440ESTFG531440:14..419 +
FG529501ESTFG529501:1..636 +
GH719149ESTGH719149:239..623 +
CD858640ESTCD858640:112..622 +
Unigenes
This contig is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Pisum sativum unigene v1Pisum sativum unigene v1contig
Analyses
This contig is derived from or has results from the following analyses
Analysis NameDate Performed
Pisum sativum unigene v12010-12-27
Homology Analysis: Pisum sativum unigene v1 vs Trembl2010-12-28
Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide2011-02-03
InterProScan analysis for Pisum sativum unigene v12010-12-29
Relationships

The following EST feature(s) are a part of this contig:

Feature NameUnique NameSpeciesType
FG531440FG531440Pisum sativumEST
FG529501FG529501Pisum sativumEST
GH719149GH719149Pisum sativumEST
CD858640CD858640Pisum sativumEST


Homology
[Close]
BLAST of Pisum_sativum_v1_Contig1635 vs. TrEMBL
Match: Q7XA95_TRIPR (Ultraviolet-B-repressible protein OS=Trifolium pratense PE=4 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.901e-40
Identity = 94/118 (79.66%), Postives = 101/118 (85.59%), Query Frame = 2 
Query:  140 MASTSIISMAVPVTCATTKKIESPISHAFFKAPLTLRPSSKSNGRFQ--VKASLKEKVVTGXXXXXXXXQMVIPDVAEAATVSPSLKNFLLSIVSGGVVVTAILGAVIGVSNFDPVKR 487
            MASTSIISM+VPVTCA++KKIE+PIS AF KAPLTL+PS KSN RFQ  VKASLKEKVVTG         M++PDVAEAATVSPSLKNFLLSIVSGGVVV AILGAVI VSNFDPVKR
Sbjct:    1 MASTSIISMSVPVTCASSKKIEAPISQAFLKAPLTLKPS-KSNTRFQFQVKASLKEKVVTGLTAAALTASMIVPDVAEAATVSPSLKNFLLSIVSGGVVVAAILGAVIAVSNFDPVKR 117
[Close]
BLAST of Pisum_sativum_v1_Contig1635 vs. TrEMBL
Match: B7FH97_MEDTR (Putative uncharacterized protein OS=Medicago truncatula PE=4 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.964e-38
Identity = 90/118 (76.27%), Postives = 98/118 (83.05%), Query Frame = 2 
Query:  140 MASTSIISMAVPVTCATTKKIESPISHAFFKAPLTLRPS-SKSNGRFQVKASLKEKVVTGXXXXXXXXQMVIPDVAEAATVSPSLKNFLLSIVSGGVVVTAILGAVIGVSNFDPVKRG 490
            MASTS ISMAVP+TCA+ KK+E+P S AF KAPLTL+PS S +  RF VKASLKEK+VTG         M+ PDVAEAATVSPSLKNFLLSIVSGGVVVTAILGAVIGVSNFDPVKRG
Sbjct:    1 MASTSTISMAVPLTCAS-KKLEAPTSQAFLKAPLTLKPSKSVAAARFVVKASLKEKIVTGLTAAALTASMISPDVAEAATVSPSLKNFLLSIVSGGVVVTAILGAVIGVSNFDPVKRG 117
[Close]
BLAST of Pisum_sativum_v1_Contig1635 vs. TrEMBL
Match: C1K5D2_9FABA (Chloroplast photosystem II subunit X OS=Vigna radiata GN=MLT55 PE=4 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.489e-32
Identity = 81/121 (66.94%), Postives = 93/121 (76.86%), Query Frame = 2 
Query:  140 MASTSIISMAVPVTCATTKKIESPISHAFFKAPLTLRPS-----SKSNGRFQVKASLKEKVVTGXXXXXXXXQMVIPDVAEAATVSPSLKNFLLSIVSGGVVVTAILGAVIGVSNFDPVKR 487
            MASTS +SMA+PVTCA+ KK+  P S AFFK PL LR S     S +NGRFQV+AS+KEKVVTG         M+ PDVAEAA+VSPSLKNFLLSI +GGVVV AI+G VIGV+NFDPVKR
Sbjct:    1 MASTSALSMAMPVTCASHKKVV-PTSDAFFK-PLPLRSSKALTASNTNGRFQVRASMKEKVVTGLTAAALTASMMAPDVAEAASVSPSLKNFLLSIAAGGVVVVAIIGVVIGVANFDPVKR 119
[Close]
BLAST of Pisum_sativum_v1_Contig1635 vs. TrEMBL
Match: B9MSX5_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_739111 PE=4 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.245e-32
Identity = 85/124 (68.55%), Postives = 95/124 (76.61%), Query Frame = 2 
Query:  140 MASTSIISMAVPVTCATTKKIESPISHAFFKAPLTLRPS-----SKSNGRFQVKASLKEKVVTGXXXXXXXXQMVIPDVAEAATV--SPSLKNFLLSIVSGGVVVTAILGAVIGVSNFDPVKRG 490
            MASTS +SMA+P+T A+ K+I  P S AFFK PL  RPS     SKS+GRFQVKASLKEK+VTG         MVIPDVAEAA    SPSLKNFLLSIV+GGVV+ AI+GAVIGVSNFDPVKRG
Sbjct:    1 MASTSAVSMALPLTYASQKRI--PASEAFFK-PLPARPSKAMSASKSSGRFQVKASLKEKLVTGLTAGALTASMVIPDVAEAAGAGASPSLKNFLLSIVAGGVVLVAIIGAVIGVSNFDPVKRG 121
[Close]
BLAST of Pisum_sativum_v1_Contig1635 vs. TrEMBL
Match: B9RK19_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1045940 PE=4 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.613e-31
Identity = 82/123 (66.67%), Postives = 95/123 (77.24%), Query Frame = 2 
Query:  140 MASTSIISMAVPVTCATTKKIESPISHAFFKAPLTLRPS-----SKSNGRFQVKASLKEKVVTGXXXXXXXXQMVIPDVAEAAT--VSPSLKNFLLSIVSGGVVVTAILGAVIGVSNFDPVKR 487
            MASTS +SMA+P+T A+ KK+  P S AFFK PL LR S     SKSNG+FQVKASLKEK +TG         MVIP+VAEAA   VSPSLKNFLLSIV+GGVV+TAI+GA+IGV+NFDPVKR
Sbjct:    1 MASTSAVSMAMPITSASQKKV--PSSEAFFK-PLPLRQSKAVMASKSNGKFQVKASLKEKAITGLTAAALTASMVIPEVAEAAGSGVSPSLKNFLLSIVAGGVVLTAIVGAIIGVANFDPVKR 120
[Close]
BLAST of Pisum_sativum_v1_Contig1635 vs. TrEMBL
Match: A9PJ86_9ROSI (Putative uncharacterized protein OS=Populus trichocarpa x Populus deltoides PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.613e-31
Identity = 83/124 (66.94%), Postives = 95/124 (76.61%), Query Frame = 2 
Query:  140 MASTSIISMAVPVTCATTKKIESPISHAFFKAPLTLRPS-----SKSNGRFQVKASLKEKVVTGXXXXXXXXQMVIPDVAEAATV--SPSLKNFLLSIVSGGVVVTAILGAVIGVSNFDPVKRG 490
            MASTS +SMA+P+T A+ K++  P S AFFK PL  RPS     SKS+GRFQVKASLKEK+VTG         MVIP+VAEAA    SPSLKNFLLSIV+GGVV+ AI+GAVIGVSNFDPVKRG
Sbjct:    1 MASTSAVSMALPLTYASQKRV--PASEAFFK-PLPARPSKAMSASKSSGRFQVKASLKEKLVTGLTAGALTASMVIPEVAEAAGAGTSPSLKNFLLSIVAGGVVLVAIIGAVIGVSNFDPVKRG 121
[Close]
BLAST of Pisum_sativum_v1_Contig1635 vs. TrEMBL
Match: A9PE66_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.613e-31
Identity = 83/124 (66.94%), Postives = 95/124 (76.61%), Query Frame = 2 
Query:  140 MASTSIISMAVPVTCATTKKIESPISHAFFKAPLTLRPS-----SKSNGRFQVKASLKEKVVTGXXXXXXXXQMVIPDVAEAATV--SPSLKNFLLSIVSGGVVVTAILGAVIGVSNFDPVKRG 490
            MASTS +SMA+P+T A+ K++  P S AFFK PL  RPS     SKS+GRFQVKASLKEK+VTG         MVIP+VAEAA    SPSLKNFLLSIV+GGVV+ AI+GAVIGVSNFDPVKRG
Sbjct:    1 MASTSAVSMALPLTYASQKRV--PASEAFFK-PLPARPSKAMSASKSSGRFQVKASLKEKLVTGLTAGALTASMVIPEVAEAAGAGASPSLKNFLLSIVAGGVVLVAIIGAVIGVSNFDPVKRG 121
[Close]
BLAST of Pisum_sativum_v1_Contig1635 vs. TrEMBL
Match: C6SYT2_SOYBN (Putative uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.190e-30
Identity = 80/121 (66.12%), Postives = 92/121 (76.03%), Query Frame = 2 
Query:  140 MASTSIISMAVPVTCATTKKIESPISHAFFKAPLTLRPS-----SKSNGRFQVKASLKEKVVTGXXXXXXXXQMVIPDVAEAATVSPSLKNFLLSIVSGGVVVTAILGAVIGVSNFDPVKR 487
            MASTS +SM +PVT A+ K++  P S AFFK PL LR S     SK NGRFQV+AS+KEKVVTG         M++PDVAEAA V+PSLKNFLLSI +GGVVV AI+GAVIGVSNFDPVKR
Sbjct:    1 MASTSAVSMVMPVTYASQKRVV-PSSDAFFK-PLPLRSSKAVTASKLNGRFQVRASMKEKVVTGLTAAALTASMMVPDVAEAA-VTPSLKNFLLSIAAGGVVVVAIIGAVIGVSNFDPVKR 118
[Close]
BLAST of Pisum_sativum_v1_Contig1635 vs. TrEMBL
Match: Q8VYY1_PEA (Ultraviolet-B-repressible protein (Fragment) OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.156e-29
Identity = 72/81 (88.89%), Postives = 72/81 (88.89%), Query Frame = 2 
Query:  248 RPSSKSNGRFQVKASLKEKVVTGXXXXXXXXQMVIPDVAEAATVSPSLKNFLLSIVSGGVVVTAILGAVIGVSNFDPVKRG 490
            R SSKSNGRFQVKASLKEKVVTG        QMVIPDVAEAATVSPSLKNFLLSIVSGGVVVTAILGAVIGVSNFDPVKRG
Sbjct:    4 RASSKSNGRFQVKASLKEKVVTGLTAAALTAQMVIPDVAEAATVSPSLKNFLLSIVSGGVVVTAILGAVIGVSNFDPVKRG 84
[Close]
BLAST of Pisum_sativum_v1_Contig1635 vs. TrEMBL
Match: C6SWQ2_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.972e-29
Identity = 78/124 (62.90%), Postives = 91/124 (73.39%), Query Frame = 2 
Query:  140 MASTSIISMAVPVTCATTKKIESPISHAFFKAPLTLRP-SSKS-------NGRFQVKASLKEKVVTGXXXXXXXXQMVIPDVAEAATVSPSLKNFLLSIVSGGVVVTAILGAVIGVSNFDPVKR 487
            MASTS +S+A+PVT A+ K++  P S A F  PL LR  SSK+       NGRFQV+AS+KEKVVTG         M+ PDVAEAA VSPSLKNFLLSI +GGVVV AI+GAV+GVSNFDPVKR
Sbjct:    1 MASTSAVSLAMPVTYASQKRVLVPSSDALFLKPLPLRSYSSKAMAASKVPNGRFQVRASMKEKVVTGLTAAAFTASMMAPDVAEAA-VSPSLKNFLLSIAAGGVVVAAIIGAVVGVSNFDPVKR 123
[Close]
BLAST of Pisum_sativum_v1_Contig1635 vs. TAIR peptide
Match: AT2G06520.1 (| Symbols: PSBX | photosystem II subunit X | chr2:2587868-2588218 REVERSE LENGTH=116)

HSP 1 Score: 93.5893 bits (231), Expect = 9.507e-20
Identity = 61/124 (49.19%), Postives = 76/124 (61.29%), Query Frame = 2 
Query:  140 MASTSIISMAVPVTCATTKKIESPISHAFFKAPLTLRPSSK---SNGR---FQVKASLKEKVVTGXXXXXXXXQMVIPDVAEAAT--VSPSLKNFLLSIVSGGVVVTAILGAVIGVSNFDPVKR 487
            MASTS +S+  P+    +    SP     F  PL L+PS     + GR    QVKA   +K +TG         MVIP++AEAA   +SPSLKNFLLSI SGG+V+T I+G V+GVSNFDPVKR
Sbjct:    1 MASTSAMSLVTPLNQTRS----SP-----FLKPLPLKPSKALVATGGRAQRLQVKALKMDKALTGISAAALTASMVIPEIAEAAGSGISPSLKNFLLSIASGGLVLTVIIGVVVGVSNFDPVKR 115
The following BLAST results are available for this feature:
BLAST of Pisum_sativum_v1_Contig1635 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
Q7XA95_TRIPR1.901e-4079.66Ultraviolet-B-repressible protein OS=Trifolium pra... [more]
B7FH97_MEDTR3.964e-3876.27Putative uncharacterized protein OS=Medicago trunc... [more]
C1K5D2_9FABA2.489e-3266.94Chloroplast photosystem II subunit X OS=Vigna radi... [more]
B9MSX5_POPTR4.245e-3268.55Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
B9RK19_RICCO1.613e-3166.67Putative uncharacterized protein OS=Ricinus commun... [more]
A9PJ86_9ROSI1.613e-3166.94Putative uncharacterized protein OS=Populus tricho... [more]
A9PE66_POPTR1.613e-3166.94Putative uncharacterized protein OS=Populus tricho... [more]
C6SYT2_SOYBN5.190e-3066.12Putative uncharacterized protein OS=Glycine max PE... [more]
Q8VYY1_PEA1.156e-2988.89Ultraviolet-B-repressible protein (Fragment) OS=Pi... [more]
C6SWQ2_SOYBN1.972e-2962.90Putative uncharacterized protein OS=Glycine max PE... [more]
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BLAST of Pisum_sativum_v1_Contig1635 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide)
Total hits: 1
Match NameE-valueIdentityDescription
AT2G06520.19.507e-2049.19| Symbols: PSBX | photosystem II subunit X | chr2:... [more]
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InterPro
Analysis Name: InterProScan analysis for Pisum sativum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009518Photosystem II PsbXPFAMPF06596PsbXcoord: 126..162
score: 1.3
NoneNo IPR availableSEGsegsegcoord: 106..113
score

Sequences
The following sequences are available for this feature:

contig sequence

>Pisum_sativum_v1_Contig1635 ID=Pisum_sativum_v1_Contig1635; Name=Pisum_sativum_v1_Contig1635; organism=Pisum sativum; type=contig; length=636bp
TACATCACACACAACCAAATATCCCAAAAATCTCCACCTCAAATTCTCCA
TTGTCTCCACCATTACCTCTCTCATAACACACGCACCACACCCATTTCCC
TTCTCTCCAAGCACCCTTCACTCCGAACAACCGATTCCAATGGCTTCAAC
TTCGATAATCTCAATGGCTGTGCCGGTAACCTGTGCCACCACCAAGAAGA
TTGAGTCACCGATCTCTCATGCATTCTTCAAGGCACCACTGACTCTGAGG
CCATCATCAAAGTCTAACGGAAGGTTTCAAGTGAAAGCATCGCTGAAGGA
GAAAGTTGTGACAGGGCTGACTGCAGCTGCACTGACAGCTCAAATGGTGA
TTCCTGATGTGGCTGAAGCTGCTACCGTTTCACCTTCTTTGAAGAATTTC
TTGCTCAGTATTGTTTCTGGTGGAGTTGTGGTTACGGCCATTCTTGGTGC
TGTTATCGGTGTTTCCAATTTCGACCCTGTCAAGCGAGGCTGAGAATGAA
TCTGATTCTCAGGCCCAACCGAGGGTATTTTAGTATTTCTCTCATTGTTA
TATTTATCTGTATAATGTATTCAGAAATGAACTCTGTGTTGTGTGTAATA
TCATAATATGTGACTCTTGATCTCCTCTTGAGCATT
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: Cellular Component
TermDefinition
GO:0009523photosystem II
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0015979photosynthesis
Vocabulary: INTERPRO
TermDefinition
IPR009518PSII_PsbX