Pisum_sativum_v1_Contig1879

Contig Overview


Name	Pisum_sativum_v1_Contig1879
Unique Name	Pisum_sativum_v1_Contig1879
Type	contig
Organism	Pisum sativum (pea)
Sequence length	549

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
EX568768	EST	EX568768:52..505 +
FG536696	EST	FG536696:1..550 +
AA523557	EST	AA523557:431..547 +

Unigenes

This contig is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Pisum sativum unigene v1	Pisum sativum unigene v1	contig

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Pisum sativum unigene v1	2010-12-27
Homology Analysis: Pisum sativum unigene v1 vs Trembl	2010-12-28
Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide	2011-02-03
InterProScan analysis for Pisum sativum unigene v1	2010-12-29

Relationships

The following EST feature(s) are a part of this contig:


Feature Name	Unique Name	Species	Type
EX568768	EX568768	Pisum sativum	EST
FG536696	FG536696	Pisum sativum	EST
AA523557	AA523557	Pisum sativum	EST

Homology

[Close]

BLAST of Pisum_sativum_v1_Contig1879 vs. TrEMBL
Match: B9GSN5_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_710754 PE=4 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 5.502e-23
Identity = 52/82 (63.41%), Postives = 64/82 (78.05%), Query Frame = 3

Query:   54 QYLLDGLKRICESVISEDISVENASLMYMMSDTYNATSLKYSCILFILEQFDKLSSKPWYCHFIRCIKPDTRNFFSTLLTMP 299
            QYLLDGLKR+CE  I++DISVEN SLMY +S+ +NA SL+ SCILFILEQFDKL +KPW  H I+ I PD R++F   L+ P
Sbjct:  530 QYLLDGLKRLCECTIAQDISVENVSLMYELSEGFNAMSLRESCILFILEQFDKLCTKPWSSHLIQRIMPDIRHYFEKALSKP 611

[Close]

BLAST of Pisum_sativum_v1_Contig1879 vs. TrEMBL
Match: D7TPF1_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_104.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00011129001 PE=4 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.091e-22
Identity = 48/82 (58.54%), Postives = 64/82 (78.05%), Query Frame = 3

Query:   54 QYLLDGLKRICESVISEDISVENASLMYMMSDTYNATSLKYSCILFILEQFDKLSSKPWYCHFIRCIKPDTRNFFSTLLTMP 299
            QYLL+GLKR+CE  I++DISVEN SLMY +S+ +NA +L+++CIL+ILE F+KL+ KPWY   I+CI P+ R FF   LT P
Sbjct:  623 QYLLEGLKRLCEYAIAQDISVENVSLMYELSEAFNAMTLRHTCILYILEHFEKLTVKPWYSRLIQCILPEIRKFFREALTKP 704

[Close]

BLAST of Pisum_sativum_v1_Contig1879 vs. TrEMBL
Match: D7T6U6_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_20.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00017925001 PE=4 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 9.712e-20
Identity = 46/82 (56.10%), Postives = 64/82 (78.05%), Query Frame = 3

Query:   54 QYLLDGLKRICESVISEDISVENASLMYMMSDTYNATSLKYSCILFILEQFDKLSSKPWYCHFIRCIKPDTRNFFSTLLTMP 299
            QYLL+GLKR+CE  I++DIS+EN S MY +S+ ++A SL+++CILFILEQF KLSS+P + H I+ I P+ R +F+  LT P
Sbjct:  617 QYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFHAISLRHTCILFILEQFSKLSSRPGHSHLIQRIIPEIRTYFAKALTKP 698

[Close]

BLAST of Pisum_sativum_v1_Contig1879 vs. TrEMBL
Match: B9RTY8_RICCO (Protein binding protein, putative OS=Ricinus communis GN=RCOM_0913950 PE=4 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.657e-19
Identity = 45/82 (54.88%), Postives = 66/82 (80.49%), Query Frame = 3

Query:   54 QYLLDGLKRICESVISEDISVENASLMYMMSDTYNATSLKYSCILFILEQFDKLSSKPWYCHFIRCIKPDTRNFFSTLLTMP 299
            QYLL+GLKR+CE  I++DIS+EN + MY +S+ ++A SL+++CILFILEQFDKL++KP + + I+ I P+ RN+F+  LT P
Sbjct:  631 QYLLEGLKRLCEYTIAQDISLENVASMYELSEAFHAISLRHTCILFILEQFDKLNAKPRHSNLIQRIIPEIRNYFAKALTKP 712

[Close]

BLAST of Pisum_sativum_v1_Contig1879 vs. TrEMBL
Match: B9HJV2_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_1085349 PE=4 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.402e-18
Identity = 45/82 (54.88%), Postives = 61/82 (74.39%), Query Frame = 3

Query:   54 QYLLDGLKRICESVISEDISVENASLMYMMSDTYNATSLKYSCILFILEQFDKLSSKPWYCHFIRCIKPDTRNFFSTLLTMP 299
            QYLL+GLKR+CE  I++DI++EN   MY +S+ ++A SL++ CILFILEQFDKLS KP +   I+ I P+ RN+F   LT P
Sbjct:  632 QYLLEGLKRLCEYTIAQDITLENIGSMYELSEAFHAISLRHRCILFILEQFDKLSDKPRHSQLIQRIIPEIRNYFEKALTNP 713

[Close]

BLAST of Pisum_sativum_v1_Contig1879 vs. TrEMBL
Match: B9H887_POPTR (Predicted protein (Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_205458 PE=4 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.187e-17
Identity = 45/69 (65.22%), Postives = 54/69 (78.26%), Query Frame = 3

Query:   54 QYLLDGLKRICESVISEDISVENASLMYMMSDTYNATSLKYSCILFILEQFDKLSSKPWYCHFIRCIKP 260
            QYLLDGLKR+CE  I++DISVEN SLMY +S+ +NA SL+ +CILFILEQFDKL +K WY  F   I P
Sbjct:  575 QYLLDGLKRLCECTIAQDISVENVSLMYELSEGFNAMSLREACILFILEQFDKLCTKRWYVIFSMHILP 643

[Close]

BLAST of Pisum_sativum_v1_Contig1879 vs. TrEMBL
Match: D7M564_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_909258 PE=4 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.892e-17
Identity = 41/85 (48.24%), Postives = 61/85 (71.76%), Query Frame = 3

Query:   54 QYLLDGLKRICESVISEDISVENASLMYMMSDTYNATSLKYSCILFILEQFDKLSSKPWYCHFIRCIKPDTRNFFSTLLTMPKHA 308
            QYLL GLKR CE  IS++I ++N   MY ++DT+NAT+L+ +C LF+LE F KLSS+ W+  F++ I P+ R++ + +LT P  A
Sbjct:  623 QYLLQGLKRQCEYTISQEICLDNIPEMYELADTFNATALRRACTLFVLEHFTKLSSQLWFAKFVKQIIPEIRSYITDILTRPVEA 707

[Close]

BLAST of Pisum_sativum_v1_Contig1879 vs. TrEMBL
Match: Q9FYA4_ARATH (Putative uncharacterized protein T19L5_20 OS=Arabidopsis thaliana GN=T19L5_20 PE=4 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.239e-16
Identity = 39/85 (45.88%), Postives = 62/85 (72.94%), Query Frame = 3

Query:   54 QYLLDGLKRICESVISEDISVENASLMYMMSDTYNATSLKYSCILFILEQFDKLSSKPWYCHFIRCIKPDTRNFFSTLLTMPKHA 308
            QYLL+GLKR CE  I+++I ++N   MY ++DT+NA++L+ +C LF+LE F KLSS+ W+  F++ I P+ R++ + +LT P  A
Sbjct:  616 QYLLEGLKRQCEYTIAQEICLDNIPEMYELADTFNASALRRACTLFVLEHFTKLSSQLWFAKFVKQIIPEIRSYMTDILTRPVEA 700

[Close]

BLAST of Pisum_sativum_v1_Contig1879 vs. TrEMBL
Match: Q8RY88_ARATH (Putative uncharacterized protein At5g13060 (Fragment) OS=Arabidopsis thaliana GN=At5g13060 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.239e-16
Identity = 39/85 (45.88%), Postives = 62/85 (72.94%), Query Frame = 3

Query:   54 QYLLDGLKRICESVISEDISVENASLMYMMSDTYNATSLKYSCILFILEQFDKLSSKPWYCHFIRCIKPDTRNFFSTLLTMPKHA 308
            QYLL+GLKR CE  I+++I ++N   MY ++DT+NA++L+ +C LF+LE F KLSS+ W+  F++ I P+ R++ + +LT P  A
Sbjct:  646 QYLLEGLKRQCEYTIAQEICLDNIPEMYELADTFNASALRRACTLFVLEHFTKLSSQLWFAKFVKQIIPEIRSYMTDILTRPVEA 730

[Close]

BLAST of Pisum_sativum_v1_Contig1879 vs. TrEMBL
Match: B7U179_ARATH (ABAP1 OS=Arabidopsis thaliana GN=ABAP1 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.239e-16
Identity = 39/85 (45.88%), Postives = 62/85 (72.94%), Query Frame = 3

Query:   54 QYLLDGLKRICESVISEDISVENASLMYMMSDTYNATSLKYSCILFILEQFDKLSSKPWYCHFIRCIKPDTRNFFSTLLTMPKHA 308
            QYLL+GLKR CE  I+++I ++N   MY ++DT+NA++L+ +C LF+LE F KLSS+ W+  F++ I P+ R++ + +LT P  A
Sbjct:  647 QYLLEGLKRQCEYTIAQEICLDNIPEMYELADTFNASALRRACTLFVLEHFTKLSSQLWFAKFVKQIIPEIRSYMTDILTRPVEA 731

[Close]

BLAST of Pisum_sativum_v1_Contig1879 vs. TAIR peptide
Match: AT5G13060.1 (| Symbols: ABAP1 | ARMADILLO BTB protein 1 | chr5:4142958-4146952 FORWARD LENGTH=737)

HSP 1 Score: 88.9669 bits (219), Expect = 1.803e-18
Identity = 39/85 (45.88%), Postives = 62/85 (72.94%), Query Frame = 3

Query:   54 QYLLDGLKRICESVISEDISVENASLMYMMSDTYNATSLKYSCILFILEQFDKLSSKPWYCHFIRCIKPDTRNFFSTLLTMPKHA 308
            QYLL+GLKR CE  I+++I ++N   MY ++DT+NA++L+ +C LF+LE F KLSS+ W+  F++ I P+ R++ + +LT P  A
Sbjct:  647 QYLLEGLKRQCEYTIAQEICLDNIPEMYELADTFNASALRRACTLFVLEHFTKLSSQLWFAKFVKQIIPEIRSYMTDILTRPVEA 731

[Close]

BLAST of Pisum_sativum_v1_Contig1879 vs. TAIR peptide
Match: AT5G19330.1 (| Symbols: ARIA | ARM repeat protein interacting with ABF2 | chr5:6508095-6512701 REVERSE LENGTH=710)

HSP 1 Score: 86.2705 bits (212), Expect = 1.169e-17
Identity = 39/80 (48.75%), Postives = 57/80 (71.25%), Query Frame = 3

Query:   54 QYLLDGLKRICESVISEDISVENASLMYMMSDTYNATSLKYSCILFILEQFDKLSSKPWYCHFIRCIKPDTRNFFSTLLT 293
            QYLL+GLKR+CE  I++DI++E+   MY +S+ ++A SL+ +CI+FILE FDKLSS PW    ++   P+ R +F   LT
Sbjct:  620 QYLLEGLKRLCEYTIAQDITLESIGDMYELSEAFHAMSLRQACIMFILEHFDKLSSMPWQNELVQRTIPEIREYFCRALT 699

The following BLAST results are available for this feature:

BLAST of Pisum_sativum_v1_Contig1879 vs. TrEMBL
BLAST of Pisum_sativum_v1_Contig1879 vs. TAIR peptide

BLAST of Pisum_sativum_v1_Contig1879 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
B9GSN5_POPTR	5.502e-23	63.41	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
D7TPF1_VITVI	2.091e-22	58.54	Whole genome shotgun sequence of line PN40024, sca...	[more]
D7T6U6_VITVI	9.712e-20	56.10	Whole genome shotgun sequence of line PN40024, sca...	[more]
B9RTY8_RICCO	1.657e-19	54.88	Protein binding protein, putative OS=Ricinus commu...	[more]
B9HJV2_POPTR	1.402e-18	54.88	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
B9H887_POPTR	1.187e-17	65.22	Predicted protein (Fragment) OS=Populus trichocarp...	[more]
D7M564_ARALY	5.892e-17	48.24	Putative uncharacterized protein OS=Arabidopsis ly...	[more]
Q9FYA4_ARATH	2.239e-16	45.88	Putative uncharacterized protein T19L5_20 OS=Arabi...	[more]
Q8RY88_ARATH	2.239e-16	45.88	Putative uncharacterized protein At5g13060 (Fragme...	[more]
B7U179_ARATH	2.239e-16	45.88	ABAP1 OS=Arabidopsis thaliana GN=ABAP1 PE=2 SV=1	[more]

BLAST of Pisum_sativum_v1_Contig1879 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide)
Total hits: 2


Match Name	E-value	Identity	Description
AT5G13060.1	1.803e-18	45.88	\| Symbols: ABAP1 \| ARMADILLO BTB protein 1 \| chr5:...	[more]
AT5G19330.1	1.169e-17	48.75	\| Symbols: ARIA \| ARM repeat protein interacting w...	[more]

InterPro

Analysis Name: InterProScan analysis for Pisum sativum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR23315	BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAINING	coord: 13..99 score: 1.4
None	No IPR available	PANTHER	PTHR23315:SF7	ANKYRIN-REPEAT-ARM DOMAIN PROTEIN	coord: 13..99 score: 1.4
None	No IPR available	SEG	seg	seg	coord: 2..17 score
None	No IPR available	SEG	seg	seg	coord: 20..31 score

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>Pisum_sativum_v1_Contig1879 ID=Pisum_sativum_v1_Contig1879; Name=Pisum_sativum_v1_Contig1879; organism=Pisum sativum; type=contig; length=549bp
GAACAGTCGATGTTGATTTGGATGTTGCCCCGGACCTCCTTAAAGCTGCA
GATCAATATCTTCTCGATGGTCTTAAGCGTATTTGTGAATCTGTTATTTC
TGAGGATATTTCTGTGGAAAATGCTTCACTAATGTATATGATGTCAGACA
CTTATAATGCTACATCGTTAAAATATTCATGCATACTATTTATCTTGGAG
CAATTTGATAAATTGAGCTCCAAACCATGGTATTGTCACTTTATCCGTTG
CATTAAGCCGGACACTCGGAACTTCTTCTCGACTTTACTTACCATGCCTA
AACATGCTGACTAGTGCGGATCCTCAGATTTTAATCTTTTTGTGAAGAAG
TATGAAAATGTACAAAGCTGTGGTTAATAATATATTTGCATGCCATTCTT
TGGTAACAACCTTAGAGCATGTCTGCTTCTGCAGGGTTAACAAGCTCTTC
AAAGTGTAGCTTCTGTCCAATTGCACAGAAGCACCTTGATTTTGTATTTT
TCTTAACACATTTCATAGTGAAAGAATCATATTTTTTATTTAGCAAGAT

Search form

Pisum_sativum_v1_Contig1879