Pisum_sativum_v1_Contig194

Contig Overview
NamePisum_sativum_v1_Contig194
Unique NamePisum_sativum_v1_Contig194
Typecontig
OrganismPisum sativum (pea)
Sequence length506
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
FG539002ESTFG539002:1..232 +
FG538786ESTFG538786:95..506 +
Unigenes
This contig is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Pisum sativum unigene v2Pisum sativum unigene v2contig
Pisum sativum unigene v1Pisum sativum unigene v1contig
Analyses
This contig is derived from or has results from the following analyses
Analysis NameDate Performed
Pisum sativum unigene v12010-12-27
Pisum sativum unigene v22011-03-01
Homology Analysis: Pisum sativum unigene v2 vs Medicago proteins2011-04-21
Relationships

The following EST feature(s) are a part of this contig:

Feature NameUnique NameSpeciesType
FG539002FG539002Pisum sativumEST
FG538786FG538786Pisum sativumEST


Homology
[Close]
BLAST of Pisum_sativum_v1_Contig194 vs. Medicago proteins
Match: IMGA|Medtr4g098250.1 (Transcription factor bHLH25 (AHRD V1 *-*- Q9T072); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding chr04_pseudomolecule_IMGAG_V3.5 34005787-34008539 E EGN_Mt100125 20100825)

HSP 1 Score: 68.5514 bits (166), Expect = 1.888e-12
Identity = 41/73 (56.16%), Postives = 48/73 (65.75%), Query Frame = -1 
Query:    6 KWMSTV------YFRKECYLNFLDDDDK*EFLSLDIDTVFQEQNQQQCLNSE---TTFNNSFTDETNFESFDF 197
            KW+S +       F +EC LNFLD D++ EFL        QEQ QQQCL+SE   TTF NSFTDETNF+SFDF
Sbjct:   17 KWLSDLEMDEYNLFPEECNLNFLDADEE-EFLP-------QEQTQQQCLSSESNSTTFTNSFTDETNFDSFDF 81
[Close]
BLAST of Pisum_sativum_v1_Contig194 vs. Medicago proteins
Match: IMGA|Medtr4g098210.1 (Transcription factor bHLH25 (AHRD V1 **-- Q9T072); contains Interpro domain(s) IPR011598 Helix-loop-helix DNA-binding chr04_pseudomolecule_IMGAG_V3.5 33975244-33977876 E EGN_Mt100125 20100825)

HSP 1 Score: 57.7658 bits (138), Expect = 3.333e-9
Identity = 34/64 (53.12%), Postives = 43/64 (67.19%), Query Frame = -1 
Query:    6 FRKECYLNFLDDDDK*EFLSLDIDTV--FQEQNQ--QQCLNSE---TTFNNSFTDETNFESFDF 176
            F +ECYLN LD D   EFLS D+ +V  F+EQ +  QQCL +E   TT + +F  ET+FESFDF
Sbjct:   29 FDEECYLNLLDADVVEEFLSRDMASVIAFEEQRETLQQCLTTECISTTLSETFNGETSFESFDF 92
The following BLAST results are available for this feature:
BLAST of Pisum_sativum_v1_Contig194 vs. Medicago proteins
Analysis Date: 2011-04-21 (Homology Analysis: Pisum sativum unigene v2 vs Medicago proteins)
Total hits: 2
Match NameE-valueIdentityDescription
IMGA|Medtr4g098250.11.888e-1256.16Transcription factor bHLH25 (AHRD V1 *-*- Q9T072);... [more]
IMGA|Medtr4g098210.13.333e-953.13Transcription factor bHLH25 (AHRD V1 **-- Q9T072);... [more]
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Properties
Property NameValue
Singlet in analysisPisum sativum unigene v2
Sequences
The following sequences are available for this feature:

contig sequence

>Pisum_sativum_v1_Contig194 ID=Pisum_sativum_v1_Contig194; Name=Pisum_sativum_v1_Contig194; organism=Pisum sativum; type=contig; length=506bp
AAAGCAAAGTCAAATGACTCAAAATTTGTTTCATCCGTGAATGAGTTGTT
GAAAGTGGTCTCTGAGTTCAAACATTGTTGTTGGTTTTGTTCTTGAAAGA
CAGTATCTATGTCAAGTGAAAGAAACTCTTATTTATCATCATCGTCAAGG
AAATTCAGGTAGCATTCCTTCCGGAAATAAACTGTACTCATCCATTTCCT
GAAAGAAAAAAAATGTTCAAGAATTTATATATAATCAACTATTTGTGATT
TTGGAAGACATGAAAGTTTAATTTGGGTTTGATTTTCTTACCAAATCCGA
AAGCCATTTGTTGGTTGATTTCCTCCATTGAGACTTAAACAAAGAAAAGT
GAGTCTTGGGGTGTTTTGTAAGTTCAGAGTTAGTACTTCTCTCTATTATA
GGACTATGGTTCTCCACTGGTCACTAGCCACGGTCACCACAGACCACAAA
GGCAGACACACTTGTGTTTTCTTAAAGAAGTTTATAAAAGAAAAGCACGT
GTGGTC
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