Pisum_sativum_v1_Contig2017
Contig Overview
Alignments
The following features are aligned
Unigenes
This contig is part of the following unigenes:
Analyses
This contig is derived from or has results from the following analyses
Relationships
The following EST feature(s) are a part of this contig:
Homology
BLAST of Pisum_sativum_v1_Contig2017 vs. SwissProt
Match: RHF1A_ARATH (E3 ubiquitin-protein ligase RHF1A OS=Arabidopsis thaliana GN=RHF1A PE=1 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 1.759e-27 Identity = 71/129 (55.04%), Postives = 88/129 (68.22%), Query Frame = 3 Query: 111 VARNNSPETDVSYRPRVLYSPSPPQDERKINTSEVFSLPESIKSKLSAASARYKESISKGTRGLKEKLLARNVTVKELSKGVQREMNAGIAGVSRMIERLELASKR-SNSPIVPVRNEGTSGFRNETSG 494 V+ ++S D + R+ PSP + + + E SLPE+IKSKL+AASA+YKESISK +GLKEKLLARN +VKELSKGVQREMNAGIAGV+RMIER++ +SKR S V SGF G Sbjct: 216 VSGHSSIPADSNNGSRISPGPSPSRSSQSPKSPEASSLPEAIKSKLAAASAKYKESISKSKQGLKEKLLARNNSVKELSKGVQREMNAGIAGVARMIERMDFSSKRFGGSAHVSTSTATASGFNFSFKG 344
BLAST of Pisum_sativum_v1_Contig2017 vs. SwissProt
Match: RHF2A_ARATH (E3 ubiquitin-protein ligase RHF2A OS=Arabidopsis thaliana GN=RHF2A PE=2 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 1.650e-17 Identity = 60/155 (38.71%), Postives = 86/155 (55.48%), Query Frame = 3 Query: 102 HPVVARNNSPE-TDVSYRPRVLYSPSPPQDERKINTSEVFSLPESIKSKLSAASARYKESISKGTRGLKEKLLARNVTVKELSKGVQREMNAGIAGVSRMIERLELA--SKRSNSPIVPVRNEGTSGFRNETSGGVVHNVSSVAPSHISSTAVVG 557 HP R SP +D + RP + S P ++ + SE+ S ES+KS+L+A S RYKESISK TR K++L +RN ++ +L V+RE++AGIA VSRM+ERLE S+ S + + V T NE + + SV + T G Sbjct: 223 HP---RQVSPSASDSNSRP---LNQSSPSEQDRAGPSELQSFSESLKSRLNAVSTRYKESISKNTRNWKDRLFSRNTSMADLGSEVKREVSAGIATVSRMMERLETRENSRPSTASVSDVSENHTPETNNEHNRAAAGDEHSVNERGVKETCATG 371
BLAST of Pisum_sativum_v1_Contig2017 vs. TrEMBL
Match: Q9ZT43_ARATH (RING-H2 finger protein RHF1a (Fragment) OS=Arabidopsis thaliana PE=2 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 2.715e-26 Identity = 71/129 (55.04%), Postives = 88/129 (68.22%), Query Frame = 3 Query: 111 VARNNSPETDVSYRPRVLYSPSPPQDERKINTSEVFSLPESIKSKLSAASARYKESISKGTRGLKEKLLARNVTVKELSKGVQREMNAGIAGVSRMIERLELASKR-SNSPIVPVRNEGTSGFRNETSG 494 V+ ++S D + R+ PSP + + + E SLPE+IKSKL+AASA+YKESISK +GLKEKLLARN +VKELSKGVQREMNAGIAGV+RMIER++ +SKR S V SGF G Sbjct: 174 VSGHSSIPADSNNGSRISPGPSPSRSSQSPKSPEASSLPEAIKSKLAAASAKYKESISKSKQGLKEKLLARNNSVKELSKGVQREMNAGIAGVARMIERMDFSSKRFGGSAHVSTSTATASGFNFSFKG 302
BLAST of Pisum_sativum_v1_Contig2017 vs. TrEMBL
Match: Q944G4_ARATH (AT4g14220/dl3150w OS=Arabidopsis thaliana PE=2 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 2.715e-26 Identity = 71/129 (55.04%), Postives = 88/129 (68.22%), Query Frame = 3 Query: 111 VARNNSPETDVSYRPRVLYSPSPPQDERKINTSEVFSLPESIKSKLSAASARYKESISKGTRGLKEKLLARNVTVKELSKGVQREMNAGIAGVSRMIERLELASKR-SNSPIVPVRNEGTSGFRNETSG 494 V+ ++S D + R+ PSP + + + E SLPE+IKSKL+AASA+YKESISK +GLKEKLLARN +VKELSKGVQREMNAGIAGV+RMIER++ +SKR S V SGF G Sbjct: 6 VSGHSSIPADSNNGSRISPGPSPSRSSQSPKSPEASSLPEAIKSKLAAASAKYKESISKSKQGLKEKLLARNNSVKELSKGVQREMNAGIAGVARMIERMDFSSKRFGGSAHVSTSTATASGFNFSFKG 134
BLAST of Pisum_sativum_v1_Contig2017 vs. TrEMBL
Match: D7T6T1_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_20.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00017909001 PE=4 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 6.049e-26 Identity = 76/160 (47.50%), Postives = 102/160 (63.75%), Query Frame = 3 Query: 150 RPRVLYSPSPPQDERKINTSEVFSLPESIKSKLSAASARYKESISKGTRGLKEKLLARNVTVKELSKGVQREMNAGIAGVSRMIERLELASKRSNSPIVPVR-NEGTSGFRNETSG------------GVVHNVSSVAPSHISSTAVVGRMEIPPCVQNG 590 +PRV++ P R+ + S++ S +SIKS+LSAASARYKESISKGTRG KEKLL+RN +VKELSKGVQREM+AGIA V+RMIERL+ KR+ + GTS ++ G G + N SS S ++S + R+E+ P +Q+G Sbjct: 232 KPRVIFDQPLPSSPRRPSPSDLLSFSDSIKSRLSAASARYKESISKGTRGFKEKLLSRNNSVKELSKGVQREMSAGIASVTRMIERLDPILKRTGASNPDSSFTGGTSNVSHKGKGVQENVITPSGNNGEISNDSSPDASPLASVTISDRVEVFP-LQSG 390
BLAST of Pisum_sativum_v1_Contig2017 vs. TrEMBL
Match: D7MH54_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_493488 PE=4 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 1.760e-25 Identity = 71/129 (55.04%), Postives = 86/129 (66.67%), Query Frame = 3 Query: 111 VARNNSPETDVSYRPRVLYSPSPPQDERKINTSEVFSLPESIKSKLSAASARYKESISKGTRGLKEKLLARNVTVKELSKGVQREMNAGIAGVSRMIERLELASKR-SNSPIVPVRNEGTSGFRNETSG 494 V+ ++ D + R+ SP + + N E SLPE+IKSKL+AASA+YKESISK +GLKEKLLARN +VKELSKGVQREMNAGIAGV+RMIERL+ +SKR S V SGF G Sbjct: 210 VSGHSPVPADSNNASRISPGLSPSRSSQSPNRPEASSLPEAIKSKLAAASAKYKESISKSKQGLKEKLLARNNSVKELSKGVQREMNAGIAGVARMIERLDFSSKRFGGSAHVSTSTATASGFNFSFKG 338
BLAST of Pisum_sativum_v1_Contig2017 vs. TrEMBL
Match: B9HV93_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_566288 PE=4 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 1.760e-25 Identity = 71/146 (48.63%), Postives = 96/146 (65.75%), Query Frame = 3 Query: 105 PVVARNNSPETDVSYRPRVLYSPSPPQDERKINTSEVFSLPESIKSKLSAASARYKESISKGTRGLKEKLLARNVTVKELSKGVQREMNAGIAGVSRMIERLELASKRSNSPIVPVRNEGTSGFRNETSG------GVVHNVSSVA 524 P V + ++ + ++PR+L+ P ++ +SEV SL +SIKSK AASARYK+S+SK TRG+KEKL+ARN +VKELSK VQREM+AGIAGV+RMIERL+L +KR+ + SGF TS GV N+ + A Sbjct: 229 PDVNQVSTTAVNSPFKPRILFRQPPTDTPQEQGSSEVLSLSDSIKSKWFAASARYKDSLSKSTRGIKEKLVARNNSVKELSKEVQREMSAGIAGVARMIERLDLTTKRTGPSM------SDSGFTGATSNFSWKGKGVEQNIIAQA 368
BLAST of Pisum_sativum_v1_Contig2017 vs. TrEMBL
Match: B9RTX5_RICCO (Protein binding protein, putative OS=Ricinus communis GN=RCOM_0913720 PE=4 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 4.335e-24 Identity = 78/164 (47.56%), Postives = 96/164 (58.54%), Query Frame = 3 Query: 129 PETDVSYRPRVLYSPSPPQDERKINTSEVFSLPESIKSKLSAASARYKESISKGTRGLKEKLLARNVTVKELSKGVQREMNAGIAGVSRMIERLELASKR--SNSPIVPVRNEGTSGFR---------------NETSGGVVHNVSSVAPSHISSTAVVGRMEI 569 P D + V P PP +SE S ES+KSK AAS+RYKESISK T+G+KEKLLARN +VKELS+GVQREM+AGIAGV+RM ERL+L KR ++SP+ R EGTS N+ S V S P H+S V GR+E+ Sbjct: 230 PSVDTAVSKDVSSKPRPPSTVAPQTSSEGLSFSESMKSKWVAASSRYKESISKSTQGIKEKLLARNNSVKELSRGVQREMSAGIAGVARMFERLDLTPKRTGASSPVSGCR-EGTSELSLKGKGMQENTILQALNKKSEEVPCAASMDVPLHVSYN-VQGRVEV 391
BLAST of Pisum_sativum_v1_Contig2017 vs. TrEMBL
Match: B9HJU4_POPTR (Predicted protein (Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_419587 PE=4 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 1.647e-23 Identity = 66/101 (65.35%), Postives = 78/101 (77.23%), Query Frame = 3 Query: 177 PPQDERKINTSEVFSLPESIKSKLSAASARYKESISKGTRGLKEKLLARNVTVKELSKGVQREMNAGIAGVSRMIERLELASKRSNSPIVPVR-NEGTSGF 476 PPQ + +S++ SL ESIKSK AASARYKES+SKGTRG+KEKLLARN +VKELSK VQREM+AGIAGV+RMIERL+L SKR+ + GTS F Sbjct: 194 PPQGQ---GSSDLSSLSESIKSKWFAASARYKESLSKGTRGMKEKLLARNNSVKELSKEVQREMSAGIAGVARMIERLDLTSKRAGPSMSDSDFTRGTSNF 291
BLAST of Pisum_sativum_v1_Contig2017 vs. TrEMBL
Match: C6TB16_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 1.034e-17 Identity = 56/110 (50.91%), Postives = 71/110 (64.55%), Query Frame = 3 Query: 144 SYRPRVLYSPSPPQDERKINTSEVFSLPESIKSKLSAASARYKESISKGTRGLKEKLLARNVTVKELSKGVQREMNAGIAGVSRMIERLELA-SKRSNSPIVPVRNEGTS 470 SY R + S P + + SE+ S ES+KSKL+A S RYKESISK TRG KE+ +RN T+ +L V+RE+NAGIA VSRM+ERLE + + RSNS P E S Sbjct: 257 SYNNRRSPNQSSPSSQDRAGPSELQSFSESLKSKLNAVSTRYKESISKSTRGWKERWFSRNNTMSDLGSEVRREVNAGIATVSRMMERLETSDNNRSNSNSAPSNIEDGS 366
BLAST of Pisum_sativum_v1_Contig2017 vs. TrEMBL
Match: D7U8Q3_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_32.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00022547001 PE=4 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 6.704e-17 Identity = 48/91 (52.75%), Postives = 65/91 (71.43%), Query Frame = 3 Query: 141 VSYRPRVLYSPSPPQDERKINTSEVFSLPESIKSKLSAASARYKESISKGTRGLKEKLLARNVTVKELSKGVQREMNAGIAGVSRMIERLE 413 +S+ R S S P D+ + SE+ S ES+KS+L+A S RYKESISK TRG KE+L +RN ++ +L V+RE+NAGIA VSRM+ERL+ Sbjct: 244 ISFNNRSSASQSSPPDQDRAGPSELQSFSESLKSRLNAVSMRYKESISKSTRGWKERLFSRNNSMADLGSEVRREVNAGIASVSRMMERLD 334
BLAST of Pisum_sativum_v1_Contig2017 vs. TrEMBL
Match: B8LS38_PICSI (Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 1.951e-16 Identity = 46/97 (47.42%), Postives = 66/97 (68.04%), Query Frame = 3 Query: 147 YRPRVLYSPSPPQDERKINTSEVFSLPESIKSKLSAASARYKESISKGTRGLKEKLLARNVTVKELSKGVQREMNAGIAGVSRMIERLELASKRSNS 437 + PR P+++++ S+ S ES KS+ +A S RYKESIS+ TRG KEK ARN V EL + VQRE++AGIAGV+R++ERL+ +SK + + Sbjct: 243 FTPRNNAGQQSPENQQRSRPSDFQSFSESFKSRFNAVSTRYKESISRSTRGFKEKFFARNNAVTELGREVQREVSAGIAGVARIMERLDPSSKNNGA 339
BLAST of Pisum_sativum_v1_Contig2017 vs. TAIR peptide
Match: AT4G14220.1 (| Symbols: RHF1A | RING-H2 group F1A | chr4:8196012-8198240 FORWARD LENGTH=371) HSP 1 Score: 123.25 bits (308), Expect = 1.718e-28 Identity = 71/129 (55.04%), Postives = 88/129 (68.22%), Query Frame = 3 Query: 111 VARNNSPETDVSYRPRVLYSPSPPQDERKINTSEVFSLPESIKSKLSAASARYKESISKGTRGLKEKLLARNVTVKELSKGVQREMNAGIAGVSRMIERLELASKR-SNSPIVPVRNEGTSGFRNETSG 494 V+ ++S D + R+ PSP + + + E SLPE+IKSKL+AASA+YKESISK +GLKEKLLARN +VKELSKGVQREMNAGIAGV+RMIER++ +SKR S V SGF G Sbjct: 216 VSGHSSIPADSNNGSRISPGPSPSRSSQSPKSPEASSLPEAIKSKLAAASAKYKESISKSKQGLKEKLLARNNSVKELSKGVQREMNAGIAGVARMIERMDFSSKRFGGSAHVSTSTATASGFNFSFKG 344
BLAST of Pisum_sativum_v1_Contig2017 vs. TAIR peptide
Match: AT5G22000.3 (| Symbols: RHF2A | RING-H2 group F2A | chr5:7277436-7279553 FORWARD LENGTH=375) HSP 1 Score: 90.1225 bits (222), Expect = 1.611e-18 Identity = 60/155 (38.71%), Postives = 86/155 (55.48%), Query Frame = 3 Query: 102 HPVVARNNSPE-TDVSYRPRVLYSPSPPQDERKINTSEVFSLPESIKSKLSAASARYKESISKGTRGLKEKLLARNVTVKELSKGVQREMNAGIAGVSRMIERLELA--SKRSNSPIVPVRNEGTSGFRNETSGGVVHNVSSVAPSHISSTAVVG 557 HP R SP +D + RP + S P ++ + SE+ S ES+KS+L+A S RYKESISK TR K++L +RN ++ +L V+RE++AGIA VSRM+ERLE S+ S + + V T NE + + SV + T G Sbjct: 223 HP---RQVSPSASDSNSRP---LNQSSPSEQDRAGPSELQSFSESLKSRLNAVSTRYKESISKNTRNWKDRLFSRNTSMADLGSEVKREVSAGIATVSRMMERLETRENSRPSTASVSDVSENHTPETNNEHNRAAAGDEHSVNERGVKETCATG 371
BLAST of Pisum_sativum_v1_Contig2017 vs. TAIR peptide
Match: AT5G22000.1 (| Symbols: RHF2A | RING-H2 group F2A | chr5:7277436-7279553 FORWARD LENGTH=375) HSP 1 Score: 90.1225 bits (222), Expect = 1.611e-18 Identity = 60/155 (38.71%), Postives = 86/155 (55.48%), Query Frame = 3 Query: 102 HPVVARNNSPE-TDVSYRPRVLYSPSPPQDERKINTSEVFSLPESIKSKLSAASARYKESISKGTRGLKEKLLARNVTVKELSKGVQREMNAGIAGVSRMIERLELA--SKRSNSPIVPVRNEGTSGFRNETSGGVVHNVSSVAPSHISSTAVVG 557 HP R SP +D + RP + S P ++ + SE+ S ES+KS+L+A S RYKESISK TR K++L +RN ++ +L V+RE++AGIA VSRM+ERLE S+ S + + V T NE + + SV + T G Sbjct: 223 HP---RQVSPSASDSNSRP---LNQSSPSEQDRAGPSELQSFSESLKSRLNAVSTRYKESISKNTRNWKDRLFSRNTSMADLGSEVKREVSAGIATVSRMMERLETRENSRPSTASVSDVSENHTPETNNEHNRAAAGDEHSVNERGVKETCATG 371
BLAST of Pisum_sativum_v1_Contig2017 vs. TAIR peptide
Match: AT5G22000.2 (| Symbols: RHF2A | RING-H2 group F2A | chr5:7277436-7279553 FORWARD LENGTH=375) HSP 1 Score: 90.1225 bits (222), Expect = 1.611e-18 Identity = 60/155 (38.71%), Postives = 86/155 (55.48%), Query Frame = 3 Query: 102 HPVVARNNSPE-TDVSYRPRVLYSPSPPQDERKINTSEVFSLPESIKSKLSAASARYKESISKGTRGLKEKLLARNVTVKELSKGVQREMNAGIAGVSRMIERLELA--SKRSNSPIVPVRNEGTSGFRNETSGGVVHNVSSVAPSHISSTAVVG 557 HP R SP +D + RP + S P ++ + SE+ S ES+KS+L+A S RYKESISK TR K++L +RN ++ +L V+RE++AGIA VSRM+ERLE S+ S + + V T NE + + SV + T G Sbjct: 223 HP---RQVSPSASDSNSRP---LNQSSPSEQDRAGPSELQSFSESLKSRLNAVSTRYKESISKNTRNWKDRLFSRNTSMADLGSEVKREVSAGIATVSRMMERLETRENSRPSTASVSDVSENHTPETNNEHNRAAAGDEHSVNERGVKETCATG 371 The following BLAST results are available for this feature:
BLAST of Pisum_sativum_v1_Contig2017 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Swissprot) Total hits: 2
BLAST of Pisum_sativum_v1_Contig2017 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl) Total hits: 10
BLAST of Pisum_sativum_v1_Contig2017 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide) Total hits: 4
InterPro
Analysis Name: InterProScan analysis for Pisum sativum unigene v1
Date Performed: 2010-12-29
Sequences
The
following sequences are available for this feature:
contig sequence >Pisum_sativum_v1_Contig2017 ID=Pisum_sativum_v1_Contig2017; Name=Pisum_sativum_v1_Contig2017; organism=Pisum sativum; type=contig; length=833bpback to top |