Pisum_sativum_v1_Contig2040

Contig Overview
NamePisum_sativum_v1_Contig2040
Unique NamePisum_sativum_v1_Contig2040
Typecontig
OrganismPisum sativum (pea)
Sequence length552
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
GH720852ESTGH720852:1..542 +
CD860493ESTCD860493:11..520 +
EX568973ESTEX568973:80..552 -
Unigenes
This contig is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Pisum sativum unigene v1Pisum sativum unigene v1contig
Analyses
This contig is derived from or has results from the following analyses
Analysis NameDate Performed
Pisum sativum unigene v12010-12-27
Homology Analysis: Pisum sativum unigene v1 vs Trembl2010-12-28
Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide2011-02-03
InterProScan analysis for Pisum sativum unigene v12010-12-29
Relationships

The following EST feature(s) are a part of this contig:

Feature NameUnique NameSpeciesType
GH720852GH720852Pisum sativumEST
CD860493CD860493Pisum sativumEST
EX568973EX568973Pisum sativumEST


Homology
[Close]
BLAST of Pisum_sativum_v1_Contig2040 vs. TrEMBL
Match: B7FH72_MEDTR (Putative uncharacterized protein OS=Medicago truncatula PE=4 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.504e-39
Identity = 75/87 (86.21%), Postives = 82/87 (94.25%), Query Frame = -2 
Query:  288 NRWVRPEVYPLFFAVGAAIGICGFSMARHMCINPEVRVNKQGRAAGVLENFSEGEKYTEHLLRKFSRNRSPEIMPGINGFFTDPSRN 548
            NRW+RPEVYPLF AVGAA+GIC FS+ R++CINPEVRVNKQ RAAGVLENF+EGEKYTEHLLRKFSRNRSPEIMPG+N FFTDPSRN
Sbjct:    4 NRWIRPEVYPLFAAVGAAVGICAFSLVRNICINPEVRVNKQSRAAGVLENFAEGEKYTEHLLRKFSRNRSPEIMPGLNSFFTDPSRN 90
[Close]
BLAST of Pisum_sativum_v1_Contig2040 vs. TrEMBL
Match: C6T215_SOYBN (Putative uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 6.382e-35
Identity = 68/88 (77.27%), Postives = 76/88 (86.36%), Query Frame = -2 
Query:  288 ANRWVRPEVYPLFFAVGAAIGICGFSMARHMCINPEVRVNKQGRAAGVLENFSEGEKYTEHLLRKFSRNRSPEIMPGINGFFTDPSRN 551
            ANRW+RPEVYPLF AVGAA+GICGF + R +CINPEVRVNK+GR AGVLENF+EGEKY EH LRK+ RNR+PEIMP IN FF D SRN
Sbjct:    2 ANRWLRPEVYPLFAAVGAAVGICGFQLVRSICINPEVRVNKEGRKAGVLENFAEGEKYAEHFLRKYVRNRTPEIMPSINSFFADTSRN 89
[Close]
BLAST of Pisum_sativum_v1_Contig2040 vs. TrEMBL
Match: A9PCV0_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_728792 PE=4 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.502e-33
Identity = 66/87 (75.86%), Postives = 75/87 (86.21%), Query Frame = -2 
Query:  288 NRWVRPEVYPLFFAVGAAIGICGFSMARHMCINPEVRVNKQGRAAGVLENFSEGEKYTEHLLRKFSRNRSPEIMPGINGFFTDPSRN 548
            +RW+RPEVYPLF AVG A+GICGF +AR++CINPEVRV KQ RAAGVL+NFSEGEKY+EH LRK  RNRSP+IMP IN FFTDP  N
Sbjct:    4 SRWLRPEVYPLFAAVGVAVGICGFQLARNICINPEVRVTKQNRAAGVLDNFSEGEKYSEHGLRKLVRNRSPQIMPSINNFFTDPKLN 90
[Close]
BLAST of Pisum_sativum_v1_Contig2040 vs. TrEMBL
Match: D7SHY6_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_0.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00007833001 PE=4 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 7.801e-33
Identity = 61/87 (70.11%), Postives = 77/87 (88.51%), Query Frame = -2 
Query:  288 NRWVRPEVYPLFFAVGAAIGICGFSMARHMCINPEVRVNKQGRAAGVLENFSEGEKYTEHLLRKFSRNRSPEIMPGINGFFTDPSRN 548
            NRW+RPEVYPLF A+G A+GICGF + R++CINP+VRV+K+ RAAGVLENF+EG+KY+EH LRK+ RN+SPEIMP IN FF+DP +N
Sbjct:    2 NRWLRPEVYPLFAAMGVAVGICGFQLVRNICINPDVRVSKENRAAGVLENFTEGQKYSEHFLRKYVRNKSPEIMPSINSFFSDPEKN 88
[Close]
BLAST of Pisum_sativum_v1_Contig2040 vs. TrEMBL
Match: Q1H8M8_BETVU (B12D-like protein OS=Beta vulgaris GN=b12D PE=4 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.019e-32
Identity = 64/87 (73.56%), Postives = 74/87 (85.06%), Query Frame = -2 
Query:  288 NRWVRPEVYPLFFAVGAAIGICGFSMARHMCINPEVRVNKQGRAAGVLENFSEGEKYTEHLLRKFSRNRSPEIMPGINGFFTDPSRN 548
            NRWVRPEVYPLF AVG A+GICG  + R++CINPEVRV+K+ RAAGVLENFSEGEKY EH LRK+ RN++PEIMP IN FF D +RN
Sbjct:    5 NRWVRPEVYPLFAAVGVAVGICGVQLVRNICINPEVRVSKENRAAGVLENFSEGEKYAEHFLRKYVRNKTPEIMPSINSFFADSTRN 91
[Close]
BLAST of Pisum_sativum_v1_Contig2040 vs. TrEMBL
Match: D2XQY6_WOLAR (B12D-like protein OS=Wolffia arrhiza PE=4 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.019e-32
Identity = 63/84 (75.00%), Postives = 74/84 (88.10%), Query Frame = -2 
Query:  297 NRWVRPEVYPLFFAVGAAIGICGFSMARHMCINPEVRVNKQGRAAGVLENFSEGEKYTEHLLRKFSRNRSPEIMPGINGFFTDP 548
            NRWVRPEVYPLF AVG A+GICGF + R++CINPEVRV+K+GRA+GVLENF+EGE+Y EH LRKF RN+ PEIMP INGFF +P
Sbjct:    7 NRWVRPEVYPLFAAVGVAVGICGFQLVRNVCINPEVRVSKEGRASGVLENFAEGERYAEHSLRKFLRNKRPEIMPSINGFFANP 90
[Close]
BLAST of Pisum_sativum_v1_Contig2040 vs. TrEMBL
Match: B9R8Z4_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1512780 PE=4 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.057e-32
Identity = 62/85 (72.94%), Postives = 74/85 (87.06%), Query Frame = -2 
Query:  294 NRWVRPEVYPLFFAVGAAIGICGFSMARHMCINPEVRVNKQGRAAGVLENFSEGEKYTEHLLRKFSRNRSPEIMPGINGFFTDPS 548
            NRW+RPEVYPLF A+G A+GIC F + R++CINPEVRVNKQ RAAGVLENF EGEKY+E+ LRKF RN++PEIMP IN FFT+P+
Sbjct:    4 NRWIRPEVYPLFAAMGVAVGICSFQLVRNICINPEVRVNKQNRAAGVLENFKEGEKYSENFLRKFVRNKTPEIMPSINRFFTEPN 88
[Close]
BLAST of Pisum_sativum_v1_Contig2040 vs. TrEMBL
Match: Q9XHD5_IPOBA (B12D protein OS=Ipomoea batatas PE=4 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.591e-31
Identity = 60/87 (68.97%), Postives = 73/87 (83.91%), Query Frame = -2 
Query:  288 NRWVRPEVYPLFFAVGAAIGICGFSMARHMCINPEVRVNKQGRAAGVLENFSEGEKYTEHLLRKFSRNRSPEIMPGINGFFTDPSRN 548
            +RW+RPEVYPLF A+  A+GICGF + R++  NPEVRVNK+GRAAGVLEN+ EG+KY EH LRKF RN+SPEIMP +N FF+DP RN
Sbjct:    4 SRWIRPEVYPLFAAMSVAVGICGFQLIRNLTTNPEVRVNKEGRAAGVLENYEEGKKYAEHSLRKFVRNKSPEIMPSLNRFFSDPQRN 90
[Close]
BLAST of Pisum_sativum_v1_Contig2040 vs. TrEMBL
Match: D7TAM5_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_10.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00010327001 PE=4 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 4.733e-30
Identity = 59/85 (69.41%), Postives = 69/85 (81.18%), Query Frame = -2 
Query:  294 NRWVRPEVYPLFFAVGAAIGICGFSMARHMCINPEVRVNKQGRAAGVLENFSEGEKYTEHLLRKFSRNRSPEIMPGINGFFTDPS 548
            NRW+RPEVYPLF AVG A+GICG  + R++C NPEVRV KQ R AGVLENF EGE+Y EH LRKF RN+ P+IMP IN FF+DP+
Sbjct:    7 NRWLRPEVYPLFAAVGVAVGICGMQLVRNICTNPEVRVTKQNRTAGVLENFEEGERYAEHRLRKFVRNKEPQIMPSINKFFSDPN 91
[Close]
BLAST of Pisum_sativum_v1_Contig2040 vs. TrEMBL
Match: B9RMN3_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1082060 PE=4 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 8.073e-30
Identity = 57/85 (67.06%), Postives = 73/85 (85.88%), Query Frame = -2 
Query:  297 ANRWVRPEVYPLFFAVGAAIGICGFSMARHMCINPEVRVNKQGRAAGVLENFSEGEKYTEHLLRKFSRNRSPEIMPGINGFFTDP 551
            A+RW+RPEV+PLF +VG A+GICG  + R++C NPEVRV K+ RAAGVL+NF+EGE+Y EH LRKF RNRSP+IMP +NGFF++P
Sbjct:    3 ASRWIRPEVFPLFASVGVAVGICGMQLVRNICTNPEVRVTKENRAAGVLDNFAEGERYKEHGLRKFVRNRSPQIMPSLNGFFSEP 87
[Close]
BLAST of Pisum_sativum_v1_Contig2040 vs. TAIR peptide
Match: AT3G48140.1 (| Symbols: | B12D protein | chr3:17778471-17779299 FORWARD LENGTH=88)

HSP 1 Score: 126.331 bits (316), Expect = 1.031e-29
Identity = 56/86 (65.12%), Postives = 70/86 (81.40%), Query Frame = -2 
Query:  294 ANRWVRPEVYPLFFAVGAAIGICGFSMARHMCINPEVRVNKQGRAAGVLENFSEGEKYTEHLLRKFSRNRSPEIMPGINGFFTDPS 551
            A+RW+RPEVYPLF A G A+GIC FS+ R++  NPEVR  K+ RAAG+L+N +EGEKY E+ LRKF RN+ PEIMPG+N FFTDP+
Sbjct:    2 ASRWLRPEVYPLFAATGVAVGICAFSLIRNITGNPEVRCTKENRAAGILDNHAEGEKYKENFLRKFVRNKKPEIMPGLNKFFTDPT 87
[Close]
BLAST of Pisum_sativum_v1_Contig2040 vs. TAIR peptide
Match: AT3G29970.1 (| Symbols: | B12D protein | chr3:11745299-11746481 FORWARD LENGTH=87)

HSP 1 Score: 93.2041 bits (230), Expect = 9.670e-20
Identity = 40/81 (49.38%), Postives = 55/81 (67.90%), Query Frame = -2 
Query:  303 RWVRPEVYPLFFAVGAAIGICGFSMARHMCINPEVRVNKQGRAAGVLENFSEGEKYTEHLLRKFSRNRSPEIMPGINGFFT 545
            RWVRPEVYPL  A+G    +  F + R+  +NP+ R+NK+ R  G+LEN  EGEKY +H  RK+ R R P++MP +N FF+
Sbjct:    3 RWVRPEVYPLLGAMGFVTSMVVFQLTRNAFLNPDCRINKEHRKMGILENKDEGEKYAQHNFRKYLRTRQPQVMPSLNRFFS 83
The following BLAST results are available for this feature:
BLAST of Pisum_sativum_v1_Contig2040 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
B7FH72_MEDTR2.504e-3986.21Putative uncharacterized protein OS=Medicago trunc... [more]
C6T215_SOYBN6.382e-3577.27Putative uncharacterized protein OS=Glycine max PE... [more]
A9PCV0_POPTR3.502e-3375.86Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
D7SHY6_VITVI7.801e-3370.11Whole genome shotgun sequence of line PN40024, sca... [more]
Q1H8M8_BETVU1.019e-3273.56B12D-like protein OS=Beta vulgaris GN=b12D PE=4 SV... [more]
D2XQY6_WOLAR1.019e-3275.00B12D-like protein OS=Wolffia arrhiza PE=4 SV=1[more]
B9R8Z4_RICCO5.057e-3272.94Putative uncharacterized protein OS=Ricinus commun... [more]
Q9XHD5_IPOBA5.591e-3168.97B12D protein OS=Ipomoea batatas PE=4 SV=1[more]
D7TAM5_VITVI4.733e-3069.41Whole genome shotgun sequence of line PN40024, sca... [more]
B9RMN3_RICCO8.073e-3067.06Putative uncharacterized protein OS=Ricinus commun... [more]
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BLAST of Pisum_sativum_v1_Contig2040 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide)
Total hits: 2
Match NameE-valueIdentityDescription
AT3G48140.11.031e-2965.12| Symbols: | B12D protein | chr3:17778471-1777929... [more]
AT3G29970.19.670e-2049.38| Symbols: | B12D protein | chr3:11745299-1174648... [more]
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InterPro
Analysis Name: InterProScan analysis for Pisum sativum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 36..46
score
IPR010530B12DPFAMPF06522B12Dcoord: 2..86
score: 1.4

Sequences
The following sequences are available for this feature:

contig sequence

>Pisum_sativum_v1_Contig2040 ID=Pisum_sativum_v1_Contig2040; Name=Pisum_sativum_v1_Contig2040; organism=Pisum sativum; type=contig; length=552bp
CCGGGCAGGTACAGATGGTAACAAGCTTGAACCAGGATTACCAATTGCAA
TTTATTTCTCACACCAGTTTCAACAAGCAGGCTAGAAAACATCATGACTT
CATAAAACTTCAGCAACAATTAACACAACAAACAGGACAATGTTATTCTC
AACCACAGCATACATGGGGTTCAGGCAGAGAGATCAAACACAATTTTGTT
TTCTAAATGCACGACAATAATACTGAGTTTTTGACACAACATATGTCACA
TAAGAATTCAACCATGTTATTAATCCAAAGCAACTTAATTGCGACTTGGA
TCAGTGAAGAAGCCGTTGATGCCAGGCATAATCTCTGGTGACCTGTTGCG
TGAAAACTTCCTCAACAAATGTTCGGTATACTTCTCTCCCTCAGAAAAGT
TCTCCAACACTCCTGCAGCTCGGCCCTGCTTGTTCACCCTGACTTCAGGG
TTGATGCACATGTGACGAGCCATAGAAAACCCACAGATCCCAATAGCAGC
TCCAACCGCAAAGAACAGCGGGTACACCTCGGGCCTGACCCAGCGATTAG
CC
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR010530B12D