Pisum_sativum_v1_Contig2076

Contig Overview
NamePisum_sativum_v1_Contig2076
Unique NamePisum_sativum_v1_Contig2076
Typecontig
OrganismPisum sativum (pea)
Sequence length295
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
GH720649ESTGH720649:1..292 +
AM162127ESTAM162127:26..295 +
Unigenes
This contig is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Pisum sativum unigene v1Pisum sativum unigene v1contig
Analyses
This contig is derived from or has results from the following analyses
Analysis NameDate Performed
Pisum sativum unigene v12010-12-27
Homology Analysis: Pisum sativum unigene v1 vs Trembl2010-12-28
Homology Analysis: Pisum sativum unigene v1 vs Swissprot2010-12-28
Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide2011-02-03
InterProScan analysis for Pisum sativum unigene v12010-12-29
Relationships

The following EST feature(s) are a part of this contig:

Feature NameUnique NameSpeciesType
GH720649GH720649Pisum sativumEST
AM162127AM162127Pisum sativumEST


Homology
[Close]
BLAST of Pisum_sativum_v1_Contig2076 vs. SwissProt
Match: RL23_ARATH (60S ribosomal protein L23 OS=Arabidopsis thaliana GN=RPL23A PE=2 SV=3)

HSP 1 Score: 78.9518 bits (193), Expect = 8.748e-15
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = -2 
Query:  172 YFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPR 276
            YFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPR
Sbjct:   97 YFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPR 131
[Close]
BLAST of Pisum_sativum_v1_Contig2076 vs. SwissProt
Match: RL23_YEAST (60S ribosomal protein L23 OS=Saccharomyces cerevisiae GN=RPL23A PE=1 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 3.324e-14
Identity = 33/35 (94.29%), Postives = 34/35 (97.14%), Query Frame = -2 
Query:  172 YFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPR 276
            YFEDNAGVI NPKGEMKGSAITGP+GKECADLWPR
Sbjct:   94 YFEDNAGVIANPKGEMKGSAITGPVGKECADLWPR 128
[Close]
BLAST of Pisum_sativum_v1_Contig2076 vs. SwissProt
Match: RL23_SCHPO (60S ribosomal protein L23 OS=Schizosaccharomyces pombe GN=rpl23a PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.671e-14
Identity = 33/35 (94.29%), Postives = 34/35 (97.14%), Query Frame = -2 
Query:  172 YFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPR 276
            YFEDNAGVIVNPKGEMKGSAITGP+ KECADLWPR
Sbjct:   96 YFEDNAGVIVNPKGEMKGSAITGPVAKECADLWPR 130
[Close]
BLAST of Pisum_sativum_v1_Contig2076 vs. SwissProt
Match: RL23_TOBAC (60S ribosomal protein L23 OS=Nicotiana tabacum GN=RPL23 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.406e-14
Identity = 34/35 (97.14%), Postives = 34/35 (97.14%), Query Frame = -2 
Query:  172 YFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPR 276
            YFEDNAGVIVN KGEMKGSAITGPIGKECADLWPR
Sbjct:   97 YFEDNAGVIVNAKGEMKGSAITGPIGKECADLWPR 131
[Close]
BLAST of Pisum_sativum_v1_Contig2076 vs. SwissProt
Match: RL23_TORRU (60S ribosomal protein L23 OS=Tortula ruralis GN=RPL23 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.814e-13
Identity = 33/35 (94.29%), Postives = 33/35 (94.29%), Query Frame = -2 
Query:  172 YFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPR 276
            YFEDNAGVIVNPKGEM  SAITGPIGKECADLWPR
Sbjct:   96 YFEDNAGVIVNPKGEMNPSAITGPIGKECADLWPR 130
[Close]
BLAST of Pisum_sativum_v1_Contig2076 vs. SwissProt
Match: RL23_RAT (60S ribosomal protein L23 OS=Rattus norvegicus GN=Rpl23 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.270e-13
Identity = 32/35 (91.43%), Postives = 33/35 (94.29%), Query Frame = -2 
Query:  172 YFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPR 276
            YFEDNAGVIVN KGEMKGSAITGP+ KECADLWPR
Sbjct:   97 YFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131
[Close]
BLAST of Pisum_sativum_v1_Contig2076 vs. SwissProt
Match: RL23_PONAB (60S ribosomal protein L23 OS=Pongo abelii GN=RPL23 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.270e-13
Identity = 32/35 (91.43%), Postives = 33/35 (94.29%), Query Frame = -2 
Query:  172 YFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPR 276
            YFEDNAGVIVN KGEMKGSAITGP+ KECADLWPR
Sbjct:   97 YFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131
[Close]
BLAST of Pisum_sativum_v1_Contig2076 vs. SwissProt
Match: RL23_PIG (60S ribosomal protein L23 OS=Sus scrofa GN=RPL23 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.270e-13
Identity = 32/35 (91.43%), Postives = 33/35 (94.29%), Query Frame = -2 
Query:  172 YFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPR 276
            YFEDNAGVIVN KGEMKGSAITGP+ KECADLWPR
Sbjct:   97 YFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131
[Close]
BLAST of Pisum_sativum_v1_Contig2076 vs. SwissProt
Match: RL23_MOUSE (60S ribosomal protein L23 OS=Mus musculus GN=Rpl23 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.270e-13
Identity = 32/35 (91.43%), Postives = 33/35 (94.29%), Query Frame = -2 
Query:  172 YFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPR 276
            YFEDNAGVIVN KGEMKGSAITGP+ KECADLWPR
Sbjct:   97 YFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131
[Close]
BLAST of Pisum_sativum_v1_Contig2076 vs. SwissProt
Match: RL23_ICTPU (60S ribosomal protein L23 OS=Ictalurus punctatus GN=rpl23 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 6.270e-13
Identity = 32/35 (91.43%), Postives = 33/35 (94.29%), Query Frame = -2 
Query:  172 YFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPR 276
            YFEDNAGVIVN KGEMKGSAITGP+ KECADLWPR
Sbjct:   97 YFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131
[Close]
BLAST of Pisum_sativum_v1_Contig2076 vs. TrEMBL
Match: Q9SMC5_SOLLC (Ribosomal protein L17 (Fragment) OS=Solanum lycopersicum GN=l17 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.748e-13
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = -2 
Query:  172 YFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPR 276
            YFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPR
Sbjct:   17 YFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPR 51
[Close]
BLAST of Pisum_sativum_v1_Contig2076 vs. TrEMBL
Match: Q9AV77_ORYSJ (60S ribosomal protein L17 OS=Oryza sativa subsp. japonica GN=OSJNBa0006L06.7 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.748e-13
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = -2 
Query:  172 YFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPR 276
            YFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPR
Sbjct:   97 YFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPR 131
[Close]
BLAST of Pisum_sativum_v1_Contig2076 vs. TrEMBL
Match: Q9ATF6_CASSA (Ribosomal protein L17 OS=Castanea sativa PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.748e-13
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = -2 
Query:  172 YFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPR 276
            YFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPR
Sbjct:   97 YFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPR 131
[Close]
BLAST of Pisum_sativum_v1_Contig2076 vs. TrEMBL
Match: Q7X9K1_WHEAT (Ribosomal Pr 117 (Fragment) OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.748e-13
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = -2 
Query:  172 YFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPR 276
            YFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPR
Sbjct:  104 YFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPR 138
[Close]
BLAST of Pisum_sativum_v1_Contig2076 vs. TrEMBL
Match: Q5I7K4_WHEAT (Ribosomal protein L17 OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.748e-13
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = -2 
Query:  172 YFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPR 276
            YFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPR
Sbjct:   97 YFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPR 131
[Close]
BLAST of Pisum_sativum_v1_Contig2076 vs. TrEMBL
Match: Q3HRY2_SOLTU (Ribosomal protein L17-like protein OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.748e-13
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = -2 
Query:  172 YFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPR 276
            YFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPR
Sbjct:   97 YFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPR 131
[Close]
BLAST of Pisum_sativum_v1_Contig2076 vs. TrEMBL
Match: Q1H559_ARATH (At2g33370 OS=Arabidopsis thaliana PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.748e-13
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = -2 
Query:  172 YFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPR 276
            YFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPR
Sbjct:   97 YFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPR 131
[Close]
BLAST of Pisum_sativum_v1_Contig2076 vs. TrEMBL
Match: O65068_PICMA (60S ribosomal protein L17 (Fragment) OS=Picea mariana GN=Sb38 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.748e-13
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = -2 
Query:  172 YFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPR 276
            YFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPR
Sbjct:   90 YFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPR 124
[Close]
BLAST of Pisum_sativum_v1_Contig2076 vs. TrEMBL
Match: O22686_ARATH (F19P19.5 protein OS=Arabidopsis thaliana GN=F19P19.5 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.748e-13
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = -2 
Query:  172 YFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPR 276
            YFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPR
Sbjct:  114 YFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPR 148
[Close]
BLAST of Pisum_sativum_v1_Contig2076 vs. TrEMBL
Match: D7KDF3_ARALY (60S ribosomal protein L23 OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_470426 PE=4 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.748e-13
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = -2 
Query:  172 YFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPR 276
            YFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPR
Sbjct:   97 YFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPR 131
[Close]
BLAST of Pisum_sativum_v1_Contig2076 vs. TAIR peptide
Match: AT3G04400.2 (| Symbols: emb2171 | Ribosomal protein L14p/L23e family protein | chr3:1167611-1168308 FORWARD LENGTH=125)

HSP 1 Score: 78.9518 bits (193), Expect = 6.886e-16
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = -2 
Query:  172 YFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPR 276
            YFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPR
Sbjct:   82 YFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPR 116
[Close]
BLAST of Pisum_sativum_v1_Contig2076 vs. TAIR peptide
Match: AT3G04400.1 (| Symbols: emb2171 | Ribosomal protein L14p/L23e family protein | chr3:1167339-1168308 FORWARD LENGTH=140)

HSP 1 Score: 78.9518 bits (193), Expect = 6.886e-16
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = -2 
Query:  172 YFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPR 276
            YFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPR
Sbjct:   97 YFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPR 131
[Close]
BLAST of Pisum_sativum_v1_Contig2076 vs. TAIR peptide
Match: AT2G33370.1 (| Symbols: | Ribosomal protein L14p/L23e family protein | chr2:14143718-14144644 REVERSE LENGTH=140)

HSP 1 Score: 78.9518 bits (193), Expect = 6.886e-16
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = -2 
Query:  172 YFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPR 276
            YFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPR
Sbjct:   97 YFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPR 131
[Close]
BLAST of Pisum_sativum_v1_Contig2076 vs. TAIR peptide
Match: AT1G04480.1 (| Symbols: | Ribosomal protein L14p/L23e family protein | chr1:1216110-1217257 FORWARD LENGTH=140)

HSP 1 Score: 78.9518 bits (193), Expect = 6.886e-16
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = -2 
Query:  172 YFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPR 276
            YFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPR
Sbjct:   97 YFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPR 131
The following BLAST results are available for this feature:
BLAST of Pisum_sativum_v1_Contig2076 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Swissprot)
Total hits: 10
Match NameE-valueIdentityDescription
RL23_ARATH8.748e-15100.0060S ribosomal protein L23 OS=Arabidopsis thaliana ... [more]
RL23_YEAST3.324e-1494.2960S ribosomal protein L23 OS=Saccharomyces cerevis... [more]
RL23_SCHPO5.671e-1494.2960S ribosomal protein L23 OS=Schizosaccharomyces p... [more]
RL23_TOBAC7.406e-1497.1460S ribosomal protein L23 OS=Nicotiana tabacum GN=... [more]
RL23_TORRU2.814e-1394.2960S ribosomal protein L23 OS=Tortula ruralis GN=RP... [more]
RL23_RAT6.270e-1391.4360S ribosomal protein L23 OS=Rattus norvegicus GN=... [more]
RL23_PONAB6.270e-1391.4360S ribosomal protein L23 OS=Pongo abelii GN=RPL23... [more]
RL23_PIG6.270e-1391.4360S ribosomal protein L23 OS=Sus scrofa GN=RPL23 P... [more]
RL23_MOUSE6.270e-1391.4360S ribosomal protein L23 OS=Mus musculus GN=Rpl23... [more]
RL23_ICTPU6.270e-1391.4360S ribosomal protein L23 OS=Ictalurus punctatus G... [more]
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BLAST of Pisum_sativum_v1_Contig2076 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
Q9SMC5_SOLLC1.748e-13100.00Ribosomal protein L17 (Fragment) OS=Solanum lycope... [more]
Q9AV77_ORYSJ1.748e-13100.0060S ribosomal protein L17 OS=Oryza sativa subsp. j... [more]
Q9ATF6_CASSA1.748e-13100.00Ribosomal protein L17 OS=Castanea sativa PE=2 SV=1[more]
Q7X9K1_WHEAT1.748e-13100.00Ribosomal Pr 117 (Fragment) OS=Triticum aestivum P... [more]
Q5I7K4_WHEAT1.748e-13100.00Ribosomal protein L17 OS=Triticum aestivum PE=2 SV... [more]
Q3HRY2_SOLTU1.748e-13100.00Ribosomal protein L17-like protein OS=Solanum tube... [more]
Q1H559_ARATH1.748e-13100.00At2g33370 OS=Arabidopsis thaliana PE=2 SV=1[more]
O65068_PICMA1.748e-13100.0060S ribosomal protein L17 (Fragment) OS=Picea mari... [more]
O22686_ARATH1.748e-13100.00F19P19.5 protein OS=Arabidopsis thaliana GN=F19P19... [more]
D7KDF3_ARALY1.748e-13100.0060S ribosomal protein L23 OS=Arabidopsis lyrata su... [more]
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BLAST of Pisum_sativum_v1_Contig2076 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide)
Total hits: 4
Match NameE-valueIdentityDescription
AT3G04400.26.886e-16100.00| Symbols: emb2171 | Ribosomal protein L14p/L23e f... [more]
AT3G04400.16.886e-16100.00| Symbols: emb2171 | Ribosomal protein L14p/L23e f... [more]
AT2G33370.16.886e-16100.00| Symbols: | Ribosomal protein L14p/L23e family p... [more]
AT1G04480.16.886e-16100.00| Symbols: | Ribosomal protein L14p/L23e family p... [more]
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InterPro
Analysis Name: InterProScan analysis for Pisum sativum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000218Ribosomal protein L14b/L23eGENE3D2.40.150.20no descriptioncoord: 7..50
score: 3.9
IPR000218Ribosomal protein L14b/L23ePANTHERPTHR1176150S/60S RIBOSOMAL PROTEIN L14/L23coord: 7..50
score: 2.2
IPR000218Ribosomal protein L14b/L23ePFAMPF00238Ribosomal_L14coord: 7..50
score: 1.4
IPR000218Ribosomal protein L14b/L23eSUPERFAMILY50193Ribosomal protein L14coord: 7..50
score: 2.1
NoneNo IPR availablePANTHERPTHR11761:SF460S RIBOSOMAL PROTEIN L23coord: 7..50
score: 2.2

Sequences
The following sequences are available for this feature:

contig sequence

>Pisum_sativum_v1_Contig2076 ID=Pisum_sativum_v1_Contig2076; Name=Pisum_sativum_v1_Contig2076; organism=Pisum sativum; type=contig; length=295bp
CGATTAGCGTGGTCGCGGCCGAGGTACTTGCAACAAGTCAAGGAGTGACA
AAACAGTGCCATAGTCAGGCATAAAAAATCTAAGACAAACTTTAAGCTCA
TAGAAAACACAGAAACATGAGCTAGTTAAACCAGATATCACTCATACAAT
GGCATTGGCAGCACTTGCAATCCTTGGCCATAGATCAGCACACTCCTTAC
CGATTGGACCAGTGATGGCAGAACCTTTCATTTCACCCTTAGGATTCACA
ATGACACCAGCATTATCTTCAAAGTACCTCGGNCAGAGAACACGC
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular anatomical structure
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR000218Ribosomal_uL14