Pisum_sativum_v1_Contig2082

Contig Overview


Name	Pisum_sativum_v1_Contig2082
Unique Name	Pisum_sativum_v1_Contig2082
Type	contig
Organism	Pisum sativum (pea)
Sequence length	628

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
AJ308194	EST	AJ308194:112..473 +
GH720943	EST	GH720943:1..567 +
GH719971	EST	GH719971:115..512 +
CD858996	EST	CD858996:113..564 -
CD861225	EST	CD861225:114..540 +
GH720763	EST	GH720763:89..567 +
GH720100	EST	GH720100:115..552 +
CD860303	EST	CD860303:114..547 +
CD861132	EST	CD861132:115..555 -
CD861121	EST	CD861121:115..550 -
GH720143	EST	GH720143:115..628 +

Unigenes

This contig is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Pisum sativum unigene v2	Pisum sativum unigene v2	contig
Pisum sativum unigene v1	Pisum sativum unigene v1	contig

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Pisum sativum unigene v1	2010-12-27
Homology Analysis: Pisum sativum unigene v1 vs Trembl	2010-12-28
Pisum sativum unigene v2	2011-03-01
Homology Analysis: Pisum sativum unigene v2 vs Trembl	2011-04-27
Homology Analysis: Pisum sativum unigene v2 vs Soybean peptides	2011-04-21
Homology Analysis: Pisum sativum unigene v2 vs Medicago proteins	2011-04-21
InterProScan analysis for Pisum sativum unigene v2	2011-04-27
InterProScan analysis for Pisum sativum unigene v1	2010-12-29

Relationships

The following EST feature(s) are a part of this contig:


Feature Name	Unique Name	Species	Type
AJ308194	AJ308194	Pisum sativum	EST
GH720943	GH720943	Pisum sativum	EST
GH719971	GH719971	Pisum sativum	EST
CD858996	CD858996	Pisum sativum	EST
CD861225	CD861225	Pisum sativum	EST
GH720763	GH720763	Pisum sativum	EST
GH720100	GH720100	Pisum sativum	EST
CD860303	CD860303	Pisum sativum	EST
CD861132	CD861132	Pisum sativum	EST
CD861121	CD861121	Pisum sativum	EST
GH720143	GH720143	Pisum sativum	EST

Homology

[Close]

BLAST of Pisum_sativum_v1_Contig2082 vs. TrEMBL
Match: B7FMV5_MEDTR (Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 6.823e-35
Identity = 95/213 (44.60%), Postives = 107/213 (50.23%), Query Frame = -1

Query:   53 KINGYPQQQYYDDDCSWMETKAQQLQSHGYPQT------------QQYP----GMKPG-YGNEYDYSMPNRHGHDSN----HNMYHQDSKPXXXXXXXXXG---------------------------------QNDYVSEHK---YEAYKEERINGSAVTKRDEVRYERRGTYGGDVHQANPYGYNNN--------PHGHGAKKGNWTLKGV 496
            K  GYPQQQ Y +D  WME KAQQ QSHG+ Q             QQ+P     MKPG +G E D+S    HGH SN    HNM+HQDS                                              NDYVSEH+   +EAYKEE + GS  +K DE+RYER GTYGGDVH ANPYGYNNN         HGHG+ K NWTLKGV
Sbjct:    4 KFLGYPQQQCYGEDGMWMEAKAQQQQSHGFHQDSYTTDHSNYYDKQQFPLPAMHMKPGGFGKESDHSFSKHHGHGSNIGGNHNMFHQDSMSNGHGFGNNNHGHGNGQKFPFGATNKHSPHHGGGVRPFNHHGGGHNDYVSEHEEYEFEAYKEECV-GSGASKMDEMRYERHGTYGGDVHYANPYGYNNNNRIKPHGHGHGHGSHKVNWTLKGV 215

[Close]

BLAST of Pisum_sativum_v1_Contig2082 vs. TrEMBL
Match: B7FMV5_MEDTR (Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 8.378e-35
Identity = 95/213 (44.60%), Postives = 107/213 (50.23%), Query Frame = -1

Query:   53 KINGYPQQQYYDDDCSWMETKAQQLQSHGYPQT------------QQYP----GMKPG-YGNEYDYSMPNRHGHDSN----HNMYHQDSKPXXXXXXXXXG---------------------------------QNDYVSEHK---YEAYKEERINGSAVTKRDEVRYERRGTYGGDVHQANPYGYNNN--------PHGHGAKKGNWTLKGV 496
            K  GYPQQQ Y +D  WME KAQQ QSHG+ Q             QQ+P     MKPG +G E D+S    HGH SN    HNM+HQDS                                              NDYVSEH+   +EAYKEE + GS  +K DE+RYER GTYGGDVH ANPYGYNNN         HGHG+ K NWTLKGV
Sbjct:    4 KFLGYPQQQCYGEDGMWMEAKAQQQQSHGFHQDSYTTDHSNYYDKQQFPLPAMHMKPGGFGKESDHSFSKHHGHGSNIGGNHNMFHQDSMSNGHGFGNNNHGHGNGQKFPFGATNKHSPHHGGGVRPFNHHGGGHNDYVSEHEEYEFEAYKEECV-GSGASKMDEMRYERHGTYGGDVHYANPYGYNNNNRIKPHGHGHGHGSHKVNWTLKGV 215

[Close]

BLAST of Pisum_sativum_v1_Contig2082 vs. Soybean peptides
Match: Glyma11g37810.1|PACid:16285749 ()

HSP 1 Score: 68.1662 bits (165), Expect = 6.343e-12
Identity = 63/200 (31.50%), Postives = 78/200 (39.00%), Query Frame = -1

Query:   53 NGYPQQQYYDDDCSWMETKAQQLQSHGYPQT------------QQYPGMKPGYGN-----------EYDYSMP--------------NRHG----------HDSNHNMYHQDSKPXXXXXXXXXGQN----DYVSEH--KYE-AYKEERINGSAVTKRDEVRYERRGTYGGDVHQANPYGYNNNPHGHGAKKGNWTLKGV 490
            N + QQQ+  D+  WME++ QQ QS+   +             +Q+PGM     N           + D SM               NRHG          H   H  Y Q  +            N    +Y SE   KYE +Y EE + G    K DE+RYER    GGD   ANPYG NN    H   K  WT KGV
Sbjct:    4 NHFQQQQHCADESMWMESQGQQ-QSYALHEDSWSSDNNYGHNHKQFPGMHMNMNNHNNRLGAFAAVDSDLSMQKHHHGNVGGAMHMNNRHGGKLGGGMFQDHGFGHGCYAQGGRKFPFGGHHHGNNNASHHEYFSEESKKYEESYAEEHV-GRVTAKVDEMRYERHNWGGGDTRYANPYGRNN--MNHKPHKFQWTAKGV 199

[Close]

BLAST of Pisum_sativum_v1_Contig2082 vs. Soybean peptides
Match: Glyma18g01730.1|PACid:16307606 ()

HSP 1 Score: 62.003 bits (149), Expect = 4.546e-10
Identity = 59/207 (28.50%), Postives = 78/207 (37.68%), Query Frame = -1

Query:   53 QQQYYDDDCSWMETKAQQLQSHGYPQT------------QQYPGMKPGYGN--------------EYDYSMP-----------------NRHG-----------HDSNHN--------MYHQDSKPXXXXXXXXXGQNDYVSEHKYE---AYKEERINGSAVTKRDEVRYERRGTYGGDVHQANPYGYNNNPHGHGAKKGNWTLKGV 478
            QQQ+  D   WME++ QQ QS+ + +             +Q+PGM     N              + D+SM                  NRHG           H  +H          +H ++           G ++Y SE   E   +Y EE + G    K DE+RYER    GGD   ANPYG N N   H   K  WT KGV
Sbjct:    7 QQQHCADGSMWMESQGQQ-QSYAFQEESWSPDNNYGHNHKQFPGMHMNMNNNNNNNKRLGAFAAVDSDFSMQKHHHGHGNGVGAMHMNMNRHGGKLGGMFQEGMHSDHHGGRKFPFGGHHHGNNNASQHHFPNHGGHHEYFSEESEEYEESYAEEHVGG-VTAKVDEMRYERHNWGGGDTRYANPYGMNMN---HKPHKFQWTAKGV 208

[Close]

BLAST of Pisum_sativum_v1_Contig2082 vs. Medicago proteins
Match: IMGA|Medtr3g086650.1 (Unknown Protein (AHRD V1) chr03_pseudomolecule_IMGAG_V3.5 28552281-28551348 F EGN_Mt100125 20100825)

HSP 1 Score: 150.984 bits (380), Expect = 4.275e-37
Identity = 95/213 (44.60%), Postives = 107/213 (50.23%), Query Frame = -1

Query:   53 KINGYPQQQYYDDDCSWMETKAQQLQSHGYPQT------------QQYP----GMKPG-YGNEYDYSMPNRHGHDSN----HNMYHQDSKPXXXXXXXXXG---------------------------------QNDYVSEHK---YEAYKEERINGSAVTKRDEVRYERRGTYGGDVHQANPYGYNNN--------PHGHGAKKGNWTLKGV 496
            K  GYPQQQ Y +D  WME KAQQ QSHG+ Q             QQ+P     MKPG +G E D+S    HGH SN    HNM+HQDS                                              NDYVSEH+   +EAYKEE + GS  +K DE+RYER GTYGGDVH ANPYGYNNN         HGHG+ K NWTLKGV
Sbjct:    4 KFLGYPQQQCYGEDGMWMEAKAQQQQSHGFHQDSYTTDHSNYYDKQQFPLPAMHMKPGGFGKESDHSFSKHHGHGSNIGGNHNMFHQDSMSNGHGFGNNNHGHGNGQKFPFGATNKHSPHHGGGVRPFNHHGGGHNDYVSEHEEYEFEAYKEECV-GSGASKMDEMRYERHGTYGGDVHYANPYGYNNNNRIKPHGHGHGHGSHKVNWTLKGV 215

The following BLAST results are available for this feature:

BLAST of Pisum_sativum_v1_Contig2082 vs. TrEMBL
BLAST of Pisum_sativum_v1_Contig2082 vs. TrEMBL
BLAST of Pisum_sativum_v1_Contig2082 vs. Soybean peptides
BLAST of Pisum_sativum_v1_Contig2082 vs. Medicago proteins

BLAST of Pisum_sativum_v1_Contig2082 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl)
Total hits: 1


Match Name	E-value	Identity	Description
B7FMV5_MEDTR	6.823e-35	44.60	Putative uncharacterized protein OS=Medicago trunc...	[more]

BLAST of Pisum_sativum_v1_Contig2082 vs. TrEMBL
Analysis Date: 2011-04-27 (Homology Analysis: Pisum sativum unigene v2 vs Trembl)
Total hits: 1


Match Name	E-value	Identity	Description
B7FMV5_MEDTR	8.378e-35	44.60	Putative uncharacterized protein OS=Medicago trunc...	[more]

BLAST of Pisum_sativum_v1_Contig2082 vs. Soybean peptides
Analysis Date: 2011-04-21 (Homology Analysis: Pisum sativum unigene v2 vs Soybean peptides)
Total hits: 2


Match Name	E-value	Identity	Description
Glyma11g37810.1\|PACid:16285749	6.343e-12	31.50		[more]
Glyma18g01730.1\|PACid:16307606	4.546e-10	28.50		[more]

BLAST of Pisum_sativum_v1_Contig2082 vs. Medicago proteins
Analysis Date: 2011-04-21 (Homology Analysis: Pisum sativum unigene v2 vs Medicago proteins)
Total hits: 1


Match Name	E-value	Identity	Description
IMGA\|Medtr3g086650.1	4.275e-37	44.60	Unknown Protein (AHRD V1) chr03_pseudomolecule_IMG...	[more]

InterPro

Analysis Name: InterProScan analysis for Pisum sativum unigene v2
Date Performed: 2011-04-27


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SEG	seg	seg	coord: 29..45 score
None	No IPR available	SEG	seg	seg	coord: 84..93 score

Analysis Name: InterProScan analysis for Pisum sativum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SEG	seg	seg	coord: 29..45 score
None	No IPR available	SEG	seg	seg	coord: 84..93 score

Properties


Property Name	Value
Singlet in analysis	Pisum sativum unigene v2

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>Pisum_sativum_v1_Contig2082 ID=Pisum_sativum_v1_Contig2082; Name=Pisum_sativum_v1_Contig2082; organism=Pisum sativum; type=contig; length=628bp
CCGAGGTACTGGCTGGATTCAGAGGTAGTAACAACAGTAACCAAGCATAT
TAGACTCCCTTTAGTGTCCAGTTGCCTTTCTTTGCTCCATGACCATGAGG
ATTATTATTGTATCCATATGGATTGGCCTGATGAACATCTCCTCCATATG
TTCCACGCCTTTCATATCTAACTTCATCCCTCTTCGTCACGGCAGAACCG
TTTATACGCTCCTCCTTGTAAGCTTCATACTTATGCTCTGATACATAATC
ATTCTGGCCACCACCATATCCATGACCATGGCCATGAGGCTTGCTGTCCT
GATGATACATATTGTGGTTAGAGTCATGGCCATGACGGTTTGGCATGGAG
TAATCATATTCGTTGCCATAACCTGGTTTCATGCCTGGATATTGCTGTGT
CTGTGGATATCCGTGGCTTTGTAGCTGTTGAGCCTTAGTTTCCATCCACG
AGCAATCATCATCATAGTATTGCTGTTGTGGATATCCATTGATCTTCCTG
CTTTGCATATTGCTGGAGGAAGGGAAAGTATCAATTCACACAAGTTTTAA
TTATTTACCATATTGTTTTAGCATACACCTCCAACATTTAAAGTTACAAA
CCCACACAAACTATAATACACACCTGCC

Search form

Pisum_sativum_v1_Contig2082