Pisum_sativum_v1_Contig2110

Contig Overview


Name	Pisum_sativum_v1_Contig2110
Unique Name	Pisum_sativum_v1_Contig2110
Type	contig
Organism	Pisum sativum (pea)
Sequence length	779

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
GH719876	EST	GH719876:1..607 -
CD859228	EST	CD859228:424..606 +
EX568949	EST	EX568949:80..779 +

Unigenes

This contig is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Pisum sativum unigene v1	Pisum sativum unigene v1	contig

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Pisum sativum unigene v1	2010-12-27
Homology Analysis: Pisum sativum unigene v1 vs Trembl	2010-12-28
Homology Analysis: Pisum sativum unigene v1 vs Swissprot	2010-12-28
Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide	2011-02-03
InterProScan analysis for Pisum sativum unigene v1	2010-12-29

Relationships

The following EST feature(s) are a part of this contig:


Feature Name	Unique Name	Species	Type
GH719876	GH719876	Pisum sativum	EST
CD859228	CD859228	Pisum sativum	EST
EX568949	EX568949	Pisum sativum	EST

Homology

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BLAST of Pisum_sativum_v1_Contig2110 vs. SwissProt
Match: RR30_SPIOL (30S ribosomal protein 1, chloroplastic OS=Spinacia oleracea GN=RPS30 PE=1 SV=2)

HSP 1 Score: 235.343 bits (599), Expect = 2.823e-61
Identity = 119/183 (65.03%), Postives = 147/183 (80.33%), Query Frame = 2

Query:   17 GEFARGPRTRRCEVTLFTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKEKETDHGRHMKGSNRLKFREPILPLLSEDEE-DEVEISPQ--KEDEEQLIEEVVRTKYFDIPPLTVFEAIDQLENVHHDFYAFRNEETGEINIIYKRKEGGYGLIIPKGDCEADKLEPIVLDLAKEPSVQE 556
            G+ ++GP+ RRCEVTLFTKRHGV+RAEE AE+ Y SIDLVSSIIQRKLRKIK+K +DHGRHMKG NR K R+P    ++ +E  +EVE +P     +++  IEEVVRTKYFD+PPLT+ EA++QLENV HDFYAFRNEETG+INI+YKRKEGGYGLIIPK D + +KLE + +   K+PS  E
Sbjct:  121 GDLSKGPKLRRCEVTLFTKRHGVIRAEEDAESLYSSIDLVSSIIQRKLRKIKDKVSDHGRHMKGFNRSKVRDPEPVRITREEVLEEVESAPAPVSVEDDDFIEEVVRTKYFDMPPLTITEAVEQLENVDHDFYAFRNEETGDINILYKRKEGGYGLIIPK-DGKTEKLESLPVQTDKQPSFAE 302

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BLAST of Pisum_sativum_v1_Contig2110 vs. SwissProt
Match: LRTA_SYNP2 (Light repressed protein A OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=lrtA PE=3 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 8.878e-23
Identity = 65/154 (42.21%), Postives = 89/154 (57.79%), Query Frame = 2

Query:   26 ARGPRTRRCEVTLFTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKEKETDHGRHMKGSNRLKFREPILPLLSEDEEDEVEISPQKEDEEQLIEEVVRTKYFDIPPLTVFEAIDQLENVHHDFYAFRNEETGEINIIYKRKEGGYGLIIPK 487
            AR     + EVT++     V+RA+E +E  Y SIDLVS  I R+LRK KEK      H++          +LP      ED V  +   +   +L  EVVR KYF +PP+T+ EA++QL+ V HDFY F N++T  IN+IY R  GGYG+I P+
Sbjct:   48 ARITDKHKAEVTVYANGT-VIRAQEGSENLYASIDLVSDKIARQLRKYKEKNFGKKTHVQEKT-----SEVLP------EDPVPDNLIGDRAPELPSEVVRMKYFAMPPMTIDEALEQLQLVDHDFYMFLNKDTNAINVIYIRNHGGYGVIQPR 189

[Close]

BLAST of Pisum_sativum_v1_Contig2110 vs. SwissProt
Match: LRTA_SYNY3 (Light repressed protein A homolog OS=Synechocystis sp. (strain PCC 6803) GN=lrtA PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.755e-22
Identity = 63/153 (41.18%), Postives = 90/153 (58.82%), Query Frame = 2

Query:   26 ARGPRTRRCEVTLFTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKEKETDHGRHMKGSNRLKFREPILPLLSEDEEDEVEISPQKEDEEQLIEEVVRTKYFDIPPLTVFEAIDQLENVHHDFYAFRNEETGEINIIYKRKEGGYGLIIP 484
            AR     + EVT++     V+RA+E +E  Y SIDLV+  I R+LRK KE+  D     K    +K  E +       E+  VE +   +   +L  EV+R KYF +PP+ + +A++QL+ V HDFY FRN++T EIN+IY R  GGYG+I P
Sbjct:   48 ARITNKHKAEVTVYANGT-VIRAQEGSENLYASIDLVADKIARQLRKYKERIQD-----KQHGNVKTSEIV-------EDKPVEENLIGDRAPELPSEVLRMKYFAMPPMAIEDALEQLQLVDHDFYMFRNKDTDEINVIYIRNHGGYGVIQP 187

[Close]

BLAST of Pisum_sativum_v1_Contig2110 vs. SwissProt
Match: UA82_DEIRA (Protein DR_1082 OS=Deinococcus radiodurans GN=DR_1082 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.163e-16
Identity = 52/147 (35.37%), Postives = 83/147 (56.46%), Query Frame = 2

Query:   38 RTRRCEVTLFTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKEKETDHGRHMKGSNRLKFREPILPLLSEDEEDEVEISPQKEDEEQLIEEVVRTKYFDIPPLTVFEAIDQLENVHHDFYAFRNEETGEINIIYKRKEGGYGLI 478
            R  R EV L     G++RAEEH    Y +ID  S +++R+LRK K       R+MK   R + R   LP  +E E +        +D  +   E+VR K F++ P++  +A+ Q+E + HDFY F++ + G+  ++Y+R++G YGLI
Sbjct:   52 RRNRVEVQLNVPG-GIIRAEEHHADMYAAIDKASDVLERQLRKFKT------RYMK--QRQEGRPEPLPGPAEAEVNAQGSGAAMDDVSEFHPEIVRQKRFELRPMSAEDAVVQMEALGHDFYVFQDLQ-GQTGVVYRRRDGHYGLI 188

[Close]

BLAST of Pisum_sativum_v1_Contig2110 vs. SwissProt
Match: Y2139_STAHJ (Uncharacterized protein SH2139 OS=Staphylococcus haemolyticus (strain JCSC1435) GN=SH2139 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.994e-15
Identity = 53/150 (35.33%), Postives = 80/150 (53.33%), Query Frame = 2

Query:   41 TRRCEVTLFTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIK----EKETDHGRHMKGSNRLKFREPILPLLSEDEEDEVEISPQKEDEEQLIEEVVRTKYFDIPPLTVFEAIDQLENVHHDFYAFRNEETGEINIIYKRKEGGYGLI 478
            T + EVT+  K +  +RAEE  +  Y  IDLV+S ++R++RK K     K   HG        ++   P       +  D+V   P  + E     E++R+K F + P+   EA+ Q+E + HDFY F + ET   +I+YKRK+G YGLI
Sbjct:   51 TTKIEVTIPLK-NVTLRAEERHDDLYAGIDLVTSKLERQVRKYKTRVNRKHKTHGEPEAFVAEVQEAPP-------ENVDDVNAEPTNDSEI----EIIRSKQFSLKPMDSEEAVLQMELLGHDFYIFTDRETDGTSIVYKRKDGKYGLI 188

[Close]

BLAST of Pisum_sativum_v1_Contig2110 vs. SwissProt
Match: YVYD_BACSU (Uncharacterized protein yvyD OS=Bacillus subtilis GN=yvyD PE=3 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 5.217e-15
Identity = 50/135 (37.04%), Postives = 78/135 (57.78%), Query Frame = 2

Query:   86 VRAEEHAETTYGSIDLVSSIIQRKLRKIKEKETDHGRHMKGSNRLKFREPILP--LLSEDEEDEVEISPQKEDEEQLIEEVVRTKYFDIPPLTVFEAIDQLENVHHDFYAFRNEETGEINIIYKRKEGGYGLIIP 484
            +R+E H E  Y +IDL ++ ++R++RK K K           NR KFRE   P  LL+     + +I+ Q + EE+   ++VR K F++ P+   EAI Q+  + H+F+ F N ET   N++Y+R +G YGLI P
Sbjct:   64 LRSEVHNEDMYNAIDLATNKLERQIRKHKTKV----------NR-KFREQGSPKYLLANGLGSDTDIAVQDDIEEEESLDIVRQKRFNLKPMDSEEAILQMNMLGHNFFVFTNAETNLTNVVYRRNDGKYGLIEP 187

[Close]

BLAST of Pisum_sativum_v1_Contig2110 vs. SwissProt
Match: Y1964_STAS1 (Uncharacterized protein SSP1964 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=SSP1964 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.982e-14
Identity = 49/144 (34.03%), Postives = 81/144 (56.25%), Query Frame = 2

Query:   47 RCEVTLFTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKEKETDHGRHMKGSNRLKFREPILPLLSEDEEDEVEISPQKEDEEQLIEEVVRTKYFDIPPLTVFEAIDQLENVHHDFYAFRNEETGEINIIYKRKEGGYGLI 478
            + EVT+  K+   +RAEE  +  Y  IDL+++ ++R++RK K +     R+ +G      +E    L  E E  E++    + D E    E++R K F + P+   EA+ Q++ + HDF+ F + ET   +I+YKRK+G YGLI
Sbjct:   53 KIEVTIPLKKV-TLRAEERNDDLYAGIDLINNKLERQVRKYKTRVNRRNRN-RGE-----QEAFASLPEEKEAVEIQNDENEADNEI---EIIRAKNFSLKPMDSEEAVLQMDLLGHDFFIFTDRETDGTSIVYKRKDGKYGLI 186

[Close]

BLAST of Pisum_sativum_v1_Contig2110 vs. SwissProt
Match: Y806_STAAR (Uncharacterized protein SAR0806 OS=Staphylococcus aureus (strain MRSA252) GN=SAR0806 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.883e-13
Identity = 47/144 (32.64%), Postives = 81/144 (56.25%), Query Frame = 2

Query:   47 RCEVTLFTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKEKETDHGRHMKGSNRLKFREPILPLLSEDEEDEVEISPQKEDEEQLIEEVVRTKYFDIPPLTVFEAIDQLENVHHDFYAFRNEETGEINIIYKRKEGGYGLI 478
            + EVT+  K +  +RAEE  +  Y  IDL+++ ++R++RK K +     R  +G   +   E     L E +E +V+     ++E     E++R+K F + P+   EA+ Q+  + HDF+ F + ET   +I+Y+RK+G YGLI
Sbjct:   53 KIEVTIPLK-NVTLRAEERNDDLYAGIDLINNKLERQVRKYKTRINRKSRD-RGDQEVFVAE-----LQEMQETQVDNDAYDDNEI----EIIRSKEFSLKPMDSEEAVLQMNLLGHDFFVFTDRETDGTSIVYRRKDGKYGLI 185

[Close]

BLAST of Pisum_sativum_v1_Contig2110 vs. SwissProt
Match: Y767_STAA8 (Uncharacterized protein SAOUHSC_00767 OS=Staphylococcus aureus (strain NCTC 8325) GN=SAOUHSC_00767 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.883e-13
Identity = 47/144 (32.64%), Postives = 81/144 (56.25%), Query Frame = 2

Query:   47 RCEVTLFTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKEKETDHGRHMKGSNRLKFREPILPLLSEDEEDEVEISPQKEDEEQLIEEVVRTKYFDIPPLTVFEAIDQLENVHHDFYAFRNEETGEINIIYKRKEGGYGLI 478
            + EVT+  K +  +RAEE  +  Y  IDL+++ ++R++RK K +     R  +G   +   E     L E +E +V+     ++E     E++R+K F + P+   EA+ Q+  + HDF+ F + ET   +I+Y+RK+G YGLI
Sbjct:   53 KIEVTIPLK-NVTLRAEERNDDLYAGIDLINNKLERQVRKYKTRINRKSRD-RGDQEVFVAE-----LQEMQETQVDNDAYDDNEI----EIIRSKEFSLKPMDSEEAVLQMNLLGHDFFVFTDRETDGTSIVYRRKDGKYGLI 185

[Close]

BLAST of Pisum_sativum_v1_Contig2110 vs. SwissProt
Match: Y752_STAAM (Uncharacterized protein SAV0752 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=SAV0752 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.883e-13
Identity = 47/144 (32.64%), Postives = 81/144 (56.25%), Query Frame = 2

Query:   47 RCEVTLFTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKEKETDHGRHMKGSNRLKFREPILPLLSEDEEDEVEISPQKEDEEQLIEEVVRTKYFDIPPLTVFEAIDQLENVHHDFYAFRNEETGEINIIYKRKEGGYGLI 478
            + EVT+  K +  +RAEE  +  Y  IDL+++ ++R++RK K +     R  +G   +   E     L E +E +V+     ++E     E++R+K F + P+   EA+ Q+  + HDF+ F + ET   +I+Y+RK+G YGLI
Sbjct:   53 KIEVTIPLK-NVTLRAEERNDDLYAGIDLINNKLERQVRKYKTRINRKSRD-RGDQEVFVAE-----LQEMQETQVDNDAYDDNEI----EIIRSKEFSLKPMDSEEAVLQMNLLGHDFFVFTDRETDGTSIVYRRKDGKYGLI 185

[Close]

BLAST of Pisum_sativum_v1_Contig2110 vs. TrEMBL
Match: C6T7E3_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 278.485 bits (711), Expect = 4.469e-73
Identity = 144/185 (77.84%), Postives = 162/185 (87.57%), Query Frame = 2

Query:    8 RGRGEFARGPRTRRCEVTLFTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKEKETDHGRHMKGSNRLKFREPI--LPLLSEDEEDEVEISPQKEDEEQLIEEVVRTKYFDIPPLTVFEAIDQLENVHHDFYAFRNEETGEINIIYKRKEGGYGLIIPKGDCEADKLEPIVLDLAKEPSVQE 556
            RG GEF RGPRTRRCEVTLFTKRHGVVRAEE AE+TYGSIDLVSSIIQRKLRKIKEK +DHGRHMKG NRLK REP+  LP+    EEDE+ +SPQ+E+E   I+EVVRTKYFD+PPLTV EAI+QLENV HDFY FRNEETGEINI+YKRKEGGYGLI+PKGD EA+KLEP+VL+ A E S++E
Sbjct:  114 RGGGEFGRGPRTRRCEVTLFTKRHGVVRAEEDAESTYGSIDLVSSIIQRKLRKIKEKVSDHGRHMKGFNRLKVREPVEQLPV----EEDEI-LSPQEEEES--IDEVVRTKYFDMPPLTVAEAIEQLENVDHDFYGFRNEETGEINIVYKRKEGGYGLIVPKGDGEAEKLEPVVLEPAIESSLKE 291

[Close]

BLAST of Pisum_sativum_v1_Contig2110 vs. TrEMBL
Match: B9IDE9_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_732721 PE=4 SV=1)

HSP 1 Score: 266.159 bits (679), Expect = 2.295e-69
Identity = 134/180 (74.44%), Postives = 156/180 (86.67%), Query Frame = 2

Query:   17 GEFARGPRTRRCEVTLFTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKEKETDHGRHMKGSNRLKFREPILPLLSEDEEDEVEISPQKEDEEQLIEEVVRTKYFDIPPLTVFEAIDQLENVHHDFYAFRNEETGEINIIYKRKEGGYGLIIPKGDCEADKLEPIVLDLAKEPSVQE 556
            GE  +GPR RRCEVTLFTKRHGVVRAEE AET + SIDLVSSIIQRKLRKIK+KE+DHGRHMKG NRLK REP+  ++ ED+ DEV    Q+EDE+  IEEVVRTKYFD+PPLTV EAI+QLE+VHHDFY FR+EETGEINIIYKRK GGYGLIIPKG+ EA++LEP+V++ A+EPS+ E
Sbjct:   56 GELGKGPRIRRCEVTLFTKRHGVVRAEEDAETIHASIDLVSSIIQRKLRKIKDKESDHGRHMKGFNRLKVREPMHQVVVEDDADEVS---QQEDEDY-IEEVVRTKYFDMPPLTVSEAIEQLEHVHHDFYGFRDEETGEINIIYKRKAGGYGLIIPKGNGEAERLEPLVVEPAREPSLAE 231

[Close]

BLAST of Pisum_sativum_v1_Contig2110 vs. TrEMBL
Match: A9PHY3_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 266.159 bits (679), Expect = 2.295e-69
Identity = 134/180 (74.44%), Postives = 156/180 (86.67%), Query Frame = 2

Query:   17 GEFARGPRTRRCEVTLFTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKEKETDHGRHMKGSNRLKFREPILPLLSEDEEDEVEISPQKEDEEQLIEEVVRTKYFDIPPLTVFEAIDQLENVHHDFYAFRNEETGEINIIYKRKEGGYGLIIPKGDCEADKLEPIVLDLAKEPSVQE 556
            GE  +GPR RRCEVTLFTKRHGVVRAEE AET + SIDLVSSIIQRKLRKIK+KE+DHGRHMKG NRLK REP+  ++ ED+ DEV    Q+EDE+  IEEVVRTKYFD+PPLTV EAI+QLE+VHHDFY FR+EETGEINIIYKRK GGYGLIIPKG+ EA++LEP+V++ A+EPS+ E
Sbjct:  131 GELGKGPRIRRCEVTLFTKRHGVVRAEEDAETIHASIDLVSSIIQRKLRKIKDKESDHGRHMKGFNRLKVREPMHQVVVEDDADEVS---QQEDEDY-IEEVVRTKYFDMPPLTVSEAIEQLEHVHHDFYGFRDEETGEINIIYKRKAGGYGLIIPKGNGEAERLEPLVVEPAREPSLAE 306

[Close]

BLAST of Pisum_sativum_v1_Contig2110 vs. TrEMBL
Match: B9I297_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_569684 PE=4 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 1.393e-66
Identity = 130/180 (72.22%), Postives = 150/180 (83.33%), Query Frame = 2

Query:   17 GEFARGPRTRRCEVTLFTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKEKETDHGRHMKGSNRLKFREPILPLLSEDEEDEVEISPQKEDEEQLIEEVVRTKYFDIPPLTVFEAIDQLENVHHDFYAFRNEETGEINIIYKRKEGGYGLIIPKGDCEADKLEPIVLDLAKEPSVQE 556
            GE  +GPR RRCEVTLFT RHGVVRAEE AET Y SIDLVSSIIQRKLRKIKEKE+DHGRHMKG NRLK REP+ P + E + DEV     +++ E  IEEVVRTK+FD+PPLTV EAI+QLENV HDFY FRNEETGEINI+YKRK GGYGLIIPKG+ EA++LEP+V++ A+E S+ E
Sbjct:  132 GELGKGPRIRRCEVTLFTNRHGVVRAEEDAETIYASIDLVSSIIQRKLRKIKEKESDHGRHMKGFNRLKVREPV-PQVVEGDADEVS----QQEVEDSIEEVVRTKFFDMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGLIIPKGNDEAERLEPLVVEPARESSLAE 306

[Close]

BLAST of Pisum_sativum_v1_Contig2110 vs. TrEMBL
Match: B9SEK8_RICCO (Plastid-specific 30S ribosomal protein 1, chloroplast, putative OS=Ricinus communis GN=RCOM_0969810 PE=4 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 5.292e-66
Identity = 128/180 (71.11%), Postives = 152/180 (84.44%), Query Frame = 2

Query:   17 GEFARGPRTRRCEVTLFTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKEKETDHGRHMKGSNRLKFREPILPLLSEDEEDEVEISPQKEDEEQLIEEVVRTKYFDIPPLTVFEAIDQLENVHHDFYAFRNEETGEINIIYKRKEGGYGLIIPKGDCEADKLEPIVLDLAKEPSVQE 556
            GEF +GP+ RRCEVTLFTK+HGV+RAEE AET Y SIDLVSSIIQRKLRKIKEK +DHGRHMKG NRLK REP+   + +D+ DEV+     EDE+  I+EVVRTKYFD+PPLTV EAI+QL+NV HDFY FRNEETGEINIIYKRK GGYG+IIPK + +A+KLEP+V++ A+EPS+ E
Sbjct:  134 GEFGKGPKIRRCEVTLFTKKHGVIRAEEDAETIYASIDLVSSIIQRKLRKIKEKVSDHGRHMKGFNRLKVREPVAEPV-KDDTDEVDGVLGDEDEDY-IDEVVRTKYFDMPPLTVSEAIEQLKNVDHDFYGFRNEETGEINIIYKRKAGGYGIIIPKENGKAEKLEPVVIEPAREPSIAE 311

[Close]

BLAST of Pisum_sativum_v1_Contig2110 vs. TrEMBL
Match: Q9FLV3_ARATH (Similarity to ribosomal protein 30S subunit OS=Arabidopsis thaliana GN=At5g24490 PE=4 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 6.469e-64
Identity = 122/181 (67.40%), Postives = 148/181 (81.77%), Query Frame = 2

Query:   17 GEFARGPRTRRCEVTLFTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKEKETDHGRHMKGSNRLKFREPILPLLSEDEEDEVEIS-PQKEDEEQLIEEVVRTKYFDIPPLTVFEAIDQLENVHHDFYAFRNEETGEINIIYKRKEGGYGLIIPKGDCEADKLEPIVLDLAKEPSVQE 556
            GEF +GPR RRCEVTLFTK+HGVVRAEE AET Y  IDLVS+IIQRKLRKIKEK++DHGRHMKG NRLK REP++  + ED ED  + S  ++E+E+ LI+E+VRTK F++PPLTV EA++QLE V HDFY F+NEETGEINI+YKRKEGGYGLIIPK D +A+K+EP+  +   E S  E
Sbjct:  185 GEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYACIDLVSTIIQRKLRKIKEKDSDHGRHMKGFNRLKVREPVIEPVVEDVEDSTDSSVGEEEEEDDLIKEIVRTKTFEMPPLTVAEAVEQLELVSHDFYGFQNEETGEINIVYKRKEGGYGLIIPKKDGKAEKVEPLPTEQLNEHSFAE 365

[Close]

BLAST of Pisum_sativum_v1_Contig2110 vs. TrEMBL
Match: Q94K97_ARATH (Putative uncharacterized protein At5g24490 OS=Arabidopsis thaliana GN=At5g24490 PE=2 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 6.469e-64
Identity = 122/181 (67.40%), Postives = 148/181 (81.77%), Query Frame = 2

Query:   17 GEFARGPRTRRCEVTLFTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKEKETDHGRHMKGSNRLKFREPILPLLSEDEEDEVEIS-PQKEDEEQLIEEVVRTKYFDIPPLTVFEAIDQLENVHHDFYAFRNEETGEINIIYKRKEGGYGLIIPKGDCEADKLEPIVLDLAKEPSVQE 556
            GEF +GPR RRCEVTLFTK+HGVVRAEE AET Y  IDLVS+IIQRKLRKIKEK++DHGRHMKG NRLK REP++  + ED ED  + S  ++E+E+ LI+E+VRTK F++PPLTV EA++QLE V HDFY F+NEETGEINI+YKRKEGGYGLIIPK D +A+K+EP+  +   E S  E
Sbjct:  128 GEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYACIDLVSTIIQRKLRKIKEKDSDHGRHMKGFNRLKVREPVIEPVVEDVEDSTDSSVGEEEEEDDLIKEIVRTKTFEMPPLTVAEAVEQLELVSHDFYGFQNEETGEINIVYKRKEGGYGLIIPKKDGKAEKVEPLPTEQLNEHSFAE 308

[Close]

BLAST of Pisum_sativum_v1_Contig2110 vs. TrEMBL
Match: D7M355_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_489312 PE=4 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 6.469e-64
Identity = 122/181 (67.40%), Postives = 148/181 (81.77%), Query Frame = 2

Query:   17 GEFARGPRTRRCEVTLFTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKEKETDHGRHMKGSNRLKFREPILPLLSEDEEDEVEIS-PQKEDEEQLIEEVVRTKYFDIPPLTVFEAIDQLENVHHDFYAFRNEETGEINIIYKRKEGGYGLIIPKGDCEADKLEPIVLDLAKEPSVQE 556
            GEF +GPR RRCEVTLFTK+HGVVRAEE AET Y  IDLVS+IIQRKLRKIKEK++DHGRHMKG NRLK REP++  + ED ED  + S  ++E+E+ LI+E+VRTK F++PPLTV EA++QLE V HDFY F+NEETGEINI+YKRKEGGYGLIIPK D +A+K+EP+  +   E S  E
Sbjct:  128 GEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYACIDLVSTIIQRKLRKIKEKDSDHGRHMKGFNRLKVREPVIEPVVEDVEDSTDSSLGEEEEEDDLIKEIVRTKTFEMPPLTVAEAVEQLELVSHDFYGFQNEETGEINIVYKRKEGGYGLIIPKKDGKAEKVEPLPTEQLNEHSFAE 308

[Close]

BLAST of Pisum_sativum_v1_Contig2110 vs. TrEMBL
Match: Q672Q2_SOLLC (Chloroplast-specific ribosomal protein OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 2.544e-60
Identity = 119/183 (65.03%), Postives = 143/183 (78.14%), Query Frame = 2

Query:   17 GEFARGPRTRRCEVTLFTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKEKETDHGRHMKGSNRLKFREPILPLLSEDEE---DEVEISPQKEDEEQLIEEVVRTKYFDIPPLTVFEAIDQLENVHHDFYAFRNEETGEINIIYKRKEGGYGLIIPKGDCEADKLEPIVLDLAKEPSVQE 556
            GE  +GP+ RRCEVTLFTK+HGV+RAEE  E+ YGSID+VSSIIQRKLRKIKEK++D GRHMKG +RLK R+P   L+ ED E    E E+   K D    + EVVR K FD+PPL+V EAI+QLENV HDFY FRNEETGEINI+Y+RKEGGYGLIIPK D + +KLEP+ ++  KEPS+ E
Sbjct:  131 GELGKGPKIRRCEVTLFTKKHGVIRAEEDGESIYGSIDMVSSIIQRKLRKIKEKDSDRGRHMKGFDRLKVRDPEALLVQEDLETLSQEEEVEDDKSDG--FVTEVVRKKSFDMPPLSVNEAIEQLENVDHDFYGFRNEETGEINIVYRRKEGGYGLIIPKEDGKTEKLEPLEVEPEKEPSIAE 311

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BLAST of Pisum_sativum_v1_Contig2110 vs. TrEMBL
Match: C9EFD1_SOLTU (Chloroplast ribosomal protein (Fragment) OS=Solanum tuberosum GN=CRP PE=2 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 4.797e-59
Identity = 116/174 (66.67%), Postives = 140/174 (80.46%), Query Frame = 2

Query:   17 GEFARGPRTRRCEVTLFTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKEKETDHGRHMKGSNRLKFREPILPLLSEDEEDEVEISPQKEDEEQ------LIEEVVRTKYFDIPPLTVFEAIDQLENVHHDFYAFRNEETGEINIIYKRKEGGYGLIIPKGDCEADKLEPI 520
            GE  +GP+ RRCEVTLFTK+HGV+RAEE AE+ YGSID+VSSIIQRKLRKIKEK++DHGRHMKG +RLK R+P + L+ ED    +E  PQ+E+ E        + EVVR K FD+PPL+V EAI+QLENV HDFY FRNEETGEINI+Y+RKEGGYGLIIPK D + +KLEP+
Sbjct:  103 GELGKGPKIRRCEVTLFTKKHGVIRAEEDAESIYGSIDMVSSIIQRKLRKIKEKDSDHGRHMKGFDRLKVRDPEVLLVQED----LETLPQEEEVEDDDKSDGFVTEVVRKKSFDMPPLSVNEAIEQLENVDHDFYGFRNEETGEINIVYRRKEGGYGLIIPKEDGKTEKLEPL 272

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BLAST of Pisum_sativum_v1_Contig2110 vs. TAIR peptide
Match: AT5G24490.1 (| Symbols: | 30S ribosomal protein, putative | chr5:8365690-8367178 FORWARD LENGTH=308)

HSP 1 Score: 248.054 bits (632), Expect = 4.195e-66
Identity = 122/181 (67.40%), Postives = 148/181 (81.77%), Query Frame = 2

Query:   17 GEFARGPRTRRCEVTLFTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKEKETDHGRHMKGSNRLKFREPILPLLSEDEEDEVEIS-PQKEDEEQLIEEVVRTKYFDIPPLTVFEAIDQLENVHHDFYAFRNEETGEINIIYKRKEGGYGLIIPKGDCEADKLEPIVLDLAKEPSVQE 556
            GEF +GPR RRCEVTLFTK+HGVVRAEE AET Y  IDLVS+IIQRKLRKIKEK++DHGRHMKG NRLK REP++  + ED ED  + S  ++E+E+ LI+E+VRTK F++PPLTV EA++QLE V HDFY F+NEETGEINI+YKRKEGGYGLIIPK D +A+K+EP+  +   E S  E
Sbjct:  128 GEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYACIDLVSTIIQRKLRKIKEKDSDHGRHMKGFNRLKVREPVIEPVVEDVEDSTDSSVGEEEEEDDLIKEIVRTKTFEMPPLTVAEAVEQLELVSHDFYGFQNEETGEINIVYKRKEGGYGLIIPKKDGKAEKVEPLPTEQLNEHSFAE 308

The following BLAST results are available for this feature:

BLAST of Pisum_sativum_v1_Contig2110 vs. SwissProt
BLAST of Pisum_sativum_v1_Contig2110 vs. TrEMBL
BLAST of Pisum_sativum_v1_Contig2110 vs. TAIR peptide

BLAST of Pisum_sativum_v1_Contig2110 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Swissprot)
Total hits: 10


Match Name	E-value	Identity	Description
RR30_SPIOL	2.823e-61	65.03	30S ribosomal protein 1, chloroplastic OS=Spinacia...	[more]
LRTA_SYNP2	8.878e-23	42.21	Light repressed protein A OS=Synechococcus sp. (st...	[more]
LRTA_SYNY3	5.755e-22	41.18	Light repressed protein A homolog OS=Synechocystis...	[more]
UA82_DEIRA	6.163e-16	35.37	Protein DR_1082 OS=Deinococcus radiodurans GN=DR_1...	[more]
Y2139_STAHJ	3.994e-15	35.33	Uncharacterized protein SH2139 OS=Staphylococcus h...	[more]
YVYD_BACSU	5.217e-15	37.04	Uncharacterized protein yvyD OS=Bacillus subtilis ...	[more]
Y1964_STAS1	1.982e-14	34.03	Uncharacterized protein SSP1964 OS=Staphylococcus ...	[more]
Y806_STAAR	4.883e-13	32.64	Uncharacterized protein SAR0806 OS=Staphylococcus ...	[more]
Y767_STAA8	4.883e-13	32.64	Uncharacterized protein SAOUHSC_00767 OS=Staphyloc...	[more]
Y752_STAAM	4.883e-13	32.64	Uncharacterized protein SAV0752 OS=Staphylococcus ...	[more]

BLAST of Pisum_sativum_v1_Contig2110 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
C6T7E3_SOYBN	4.469e-73	77.84	Putative uncharacterized protein OS=Glycine max PE...	[more]
B9IDE9_POPTR	2.295e-69	74.44	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
A9PHY3_POPTR	2.295e-69	74.44	Putative uncharacterized protein OS=Populus tricho...	[more]
B9I297_POPTR	1.393e-66	72.22	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
B9SEK8_RICCO	5.292e-66	71.11	Plastid-specific 30S ribosomal protein 1, chloropl...	[more]
Q9FLV3_ARATH	6.469e-64	67.40	Similarity to ribosomal protein 30S subunit OS=Ara...	[more]
Q94K97_ARATH	6.469e-64	67.40	Putative uncharacterized protein At5g24490 OS=Arab...	[more]
D7M355_ARALY	6.469e-64	67.40	Putative uncharacterized protein OS=Arabidopsis ly...	[more]
Q672Q2_SOLLC	2.544e-60	65.03	Chloroplast-specific ribosomal protein OS=Solanum ...	[more]
C9EFD1_SOLTU	4.797e-59	66.67	Chloroplast ribosomal protein (Fragment) OS=Solanu...	[more]

BLAST of Pisum_sativum_v1_Contig2110 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide)
Total hits: 1


Match Name	E-value	Identity	Description
AT5G24490.1	4.195e-66	67.40	\| Symbols: \| 30S ribosomal protein, putative \| ch...	[more]

InterPro

Analysis Name: InterProScan analysis for Pisum sativum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003489	Ribosomal protein S30Ae/sigma 54 modulation protein	GENE3D	3.30.160.100	no description	coord: 13..59 score: 4.1
IPR003489	Ribosomal protein S30Ae/sigma 54 modulation protein	PFAM	PF02482	Ribosomal_S30AE	coord: 12..63 score: 6.9
IPR003489	Ribosomal protein S30Ae/sigma 54 modulation protein	SUPERFAMILY	69754	Ribosome binding protein Y (YfiA homologue)	coord: 16..66 score: 1.7
None	No IPR available	SEG	seg	seg	coord: 23..54 score
None	No IPR available	SEG	seg	seg	coord: 21..32 score

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>Pisum_sativum_v1_Contig2110 ID=Pisum_sativum_v1_Contig2110; Name=Pisum_sativum_v1_Contig2110; organism=Pisum sativum; type=contig; length=779bp
GCGTGGTCGCGGCCGAGGTGAATTTGCCCGAGGGCCGAGAACGCGCAGAT
GTGAGGTGACTTTATTTACTAAGAGGCACGGGGTTGTGCGGGCTGAGGAA
CACGCTGAAACTACCTATGGGAGTATAGATTTGGTGTCCTCGATCATTCA
GAGAAAGTTGAGAAAGATCAAGGAAAAAGAAACTGATCATGGTCGTCACA
TGAAGGGATCCAATAGGTTGAAATTTAGGGAGCCTATTTTGCCACTACTG
TCGGAGGATGAAGAGGATGAAGTTGAAATTTCCCCACAGAAGGAGGATGA
AGAACAACTTATTGAAGAGGTTGTTCGAACAAAATACTTTGACATACCTC
CCTTAACTGTGTTTGAAGCAATTGACCAGTTGGAAAATGTTCATCATGAC
TTCTATGCATTTCGAAATGAAGAAACTGGGGAGATTAATATTATATACAA
AAGAAAAGAAGGAGGTTATGGACTCATTATACCCAAAGGAGACTGTGAAG
CAGATAAATTGGAGCCTATAGTGCTTGATCTAGCTAAAGAACCCTCTGTG
CAAGAATGAAATACCTTTCACGAGAAACTCATCATTTTGTAAGAACACAA
GAGCTTGTACATGATTAGCGGAGCCTGCCAGAAGTTGCATAGGAAGTTTA
AATAGAGTCTAGAGACTCTGGTGTTTCGAGTGCAAAACAAGTTTTAAAGT
ATGACCCTGTGACTGTAAAATGAAAGGGACACACCATTGAGTGTGCTCGA
CGTAACTTCCACAATACATATTTTCTTCT

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005488	binding

Vocabulary: **Biological Process**
Term	Definition
GO:0044238	primary metabolic process

Vocabulary: **INTERPRO**
Term	Definition
IPR003489	RHF/RaiA

Search form

Pisum_sativum_v1_Contig2110