Pisum_sativum_v1_Contig2176

Contig Overview
NamePisum_sativum_v1_Contig2176
Unique NamePisum_sativum_v1_Contig2176
Typecontig
OrganismPisum sativum (pea)
Sequence length528
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
GH719711ESTGH719711:1..528 +Pisum sativum unigene v1n/a
CD860245ESTCD860245:30..528 +Pisum sativum unigene v1n/a
Unigenes
This contig is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Pisum sativum unigene v1Pisum sativum unigene v1contig
Analyses
This contig is derived from or has results from the following analyses
Analysis NameDate Performed
Pisum sativum unigene v12010-12-27
Homology Analysis: Pisum sativum unigene v1 vs Trembl2010-12-28
Homology Analysis: Pisum sativum unigene v1 vs Swissprot2010-12-28
Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide2011-02-03
InterProScan analysis for Pisum sativum unigene v12010-12-29
Relationships

The following EST feature(s) are a part of this contig:

Feature NameUnique NameSpeciesType
GH719711GH719711Pisum sativumEST
CD860245CD860245Pisum sativumEST


Homology
[Close]
BLAST of Pisum_sativum_v1_Contig2176 vs. SwissProt
Match: RP12A_ARATH (26S proteasome non-ATPase regulatory subunit RPN12A OS=Arabidopsis thaliana GN=RPN12A PE=1 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 8.208e-43
Identity = 84/104 (80.77%), Postives = 95/104 (91.35%), Query Frame = 1 
Query:  217 MDPKLTEISQLFDRFKAAFLRKDFDSSSNLLSQLKVLLTGFRSLPPLFADTPNAIQELTIARDIYEHAVVLSVKIEDQDAFERDFFQLKPYYTDARNRLPQSPQ 528
            MDP+LTE+SQ F+RFKAAF RKD+++ S+LLSQLKVLLT F SLPPLF ++PNA +ELTIARDIYEHAVVLSVK EDQDAFERDFFQLKPYY DARNR+PQSPQ
Sbjct:    1 MDPQLTEVSQQFERFKAAFARKDYNTCSDLLSQLKVLLTKFTSLPPLFENSPNAAKELTIARDIYEHAVVLSVKTEDQDAFERDFFQLKPYYVDARNRIPQSPQ 104
[Close]
BLAST of Pisum_sativum_v1_Contig2176 vs. SwissProt
Match: RP12B_ARATH (26S proteasome non-ATPase regulatory subunit RPN12B OS=Arabidopsis thaliana GN=RPN12B PE=2 SV=2)

HSP 1 Score: 54.299 bits (129), Expect = 4.255e-7
Identity = 25/36 (69.44%), Postives = 32/36 (88.89%), Query Frame = 1 
Query:  217 MDPKLTEISQLFDRFKAAFLRKDFDSSSNLLSQLKV 324
            MDP+L E+SQ F+RFKAAF+ KDFD+ S+LLSQLK+
Sbjct:    1 MDPQLMEVSQQFERFKAAFIIKDFDTCSSLLSQLKL 36
[Close]
BLAST of Pisum_sativum_v1_Contig2176 vs. TrEMBL
Match: B7FLL3_MEDTR (Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 1.613e-50
Identity = 99/104 (95.19%), Postives = 102/104 (98.08%), Query Frame = 1 
Query:  217 MDPKLTEISQLFDRFKAAFLRKDFDSSSNLLSQLKVLLTGFRSLPPLFADTPNAIQELTIARDIYEHAVVLSVKIEDQDAFERDFFQLKPYYTDARNRLPQSPQ 528
            MDPK TE+SQLFDRFKAAFLR DFDS+SNLLSQLKVLLTGFRSLPPLFADTPNA+QELTIARDIYEHAVVLSVKIEDQDAFERDFFQLKPYYTDARNRLPQSPQ
Sbjct:    1 MDPKFTEVSQLFDRFKAAFLRNDFDSASNLLSQLKVLLTGFRSLPPLFADTPNAVQELTIARDIYEHAVVLSVKIEDQDAFERDFFQLKPYYTDARNRLPQSPQ 104
[Close]
BLAST of Pisum_sativum_v1_Contig2176 vs. TrEMBL
Match: B7FL82_MEDTR (Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 1.613e-50
Identity = 99/104 (95.19%), Postives = 102/104 (98.08%), Query Frame = 1 
Query:  217 MDPKLTEISQLFDRFKAAFLRKDFDSSSNLLSQLKVLLTGFRSLPPLFADTPNAIQELTIARDIYEHAVVLSVKIEDQDAFERDFFQLKPYYTDARNRLPQSPQ 528
            MDPK TE+SQLFDRFKAAFLR DFDS+SNLLSQLKVLLTGFRSLPPLFADTPNA+QELTIARDIYEHAVVLSVKIEDQDAFERDFFQLKPYYTDARNRLPQSPQ
Sbjct:    1 MDPKFTEVSQLFDRFKAAFLRNDFDSASNLLSQLKVLLTGFRSLPPLFADTPNAVQELTIARDIYEHAVVLSVKIEDQDAFERDFFQLKPYYTDARNRLPQSPQ 104
[Close]
BLAST of Pisum_sativum_v1_Contig2176 vs. TrEMBL
Match: C6TLM9_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 3.719e-47
Identity = 94/104 (90.38%), Postives = 98/104 (94.23%), Query Frame = 1 
Query:  217 MDPKLTEISQLFDRFKAAFLRKDFDSSSNLLSQLKVLLTGFRSLPPLFADTPNAIQELTIARDIYEHAVVLSVKIEDQDAFERDFFQLKPYYTDARNRLPQSPQ 528
            MDPKL E+SQLFDRFKA+FLR DFD+ SNLLSQLKVLLTGFRSLPPLFADTPNA+ ELTIARDIYEHAVVLSVKIEDQDAFERDFFQLKPYYTDA NRLP SPQ
Sbjct:    1 MDPKLKEVSQLFDRFKASFLRNDFDNCSNLLSQLKVLLTGFRSLPPLFADTPNAVHELTIARDIYEHAVVLSVKIEDQDAFERDFFQLKPYYTDACNRLPPSPQ 104
[Close]
BLAST of Pisum_sativum_v1_Contig2176 vs. TrEMBL
Match: C6T763_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 4.111e-46
Identity = 92/104 (88.46%), Postives = 97/104 (93.27%), Query Frame = 1 
Query:  217 MDPKLTEISQLFDRFKAAFLRKDFDSSSNLLSQLKVLLTGFRSLPPLFADTPNAIQELTIARDIYEHAVVLSVKIEDQDAFERDFFQLKPYYTDARNRLPQSPQ 528
            MDPKL E+SQLFDRFKA+F+R DFD+ SNLLSQLKVLLTGFRSLPPLFADTPNA+ ELTIARDIYEHAVVLSVK EDQDAFERDFFQLKPYYTDA NRLP SPQ
Sbjct:    1 MDPKLKEVSQLFDRFKASFIRNDFDTCSNLLSQLKVLLTGFRSLPPLFADTPNAVHELTIARDIYEHAVVLSVKNEDQDAFERDFFQLKPYYTDACNRLPPSPQ 104
[Close]
BLAST of Pisum_sativum_v1_Contig2176 vs. TrEMBL
Match: Q0GEA1_CAMSI (26S proteasome regulatory particle non-ATPase subunit 12 OS=Camellia sinensis PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 5.557e-43
Identity = 87/104 (83.65%), Postives = 93/104 (89.42%), Query Frame = 1 
Query:  217 MDPKLTEISQLFDRFKAAFLRKDFDSSSNLLSQLKVLLTGFRSLPPLFADTPNAIQELTIARDIYEHAVVLSVKIEDQDAFERDFFQLKPYYTDARNRLPQSPQ 528
            MDP LTE+SQLF+RFKAAF+R DFD+  NLLSQLKVLLT FRSLPPLF +TP AI ELT+ARDIYEHAVVLSVKIEDQDAFERDFFQLKPYYTDA  RLP SPQ
Sbjct:    1 MDPNLTEVSQLFERFKAAFMRNDFDTCDNLLSQLKVLLTKFRSLPPLFEETPKAIHELTLARDIYEHAVVLSVKIEDQDAFERDFFQLKPYYTDACGRLPPSPQ 104
[Close]
BLAST of Pisum_sativum_v1_Contig2176 vs. TrEMBL
Match: D7MIN1_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_330332 PE=4 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 7.257e-43
Identity = 86/104 (82.69%), Postives = 95/104 (91.35%), Query Frame = 1 
Query:  217 MDPKLTEISQLFDRFKAAFLRKDFDSSSNLLSQLKVLLTGFRSLPPLFADTPNAIQELTIARDIYEHAVVLSVKIEDQDAFERDFFQLKPYYTDARNRLPQSPQ 528
            MDP+LTE+SQ F+RFKAAF+RKDFDS +NLLSQLKVLLT F SLPPLF +TPNA QELTIARDIYE+AVVLSVK EDQD+FERDFFQLKPYY DARNR+P SPQ
Sbjct:    1 MDPQLTEVSQQFERFKAAFIRKDFDSCTNLLSQLKVLLTKFTSLPPLFENTPNAAQELTIARDIYEYAVVLSVKTEDQDSFERDFFQLKPYYVDARNRIPSSPQ 104
[Close]
BLAST of Pisum_sativum_v1_Contig2176 vs. TrEMBL
Match: A9PI71_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_712298 PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.238e-42
Identity = 85/104 (81.73%), Postives = 98/104 (94.23%), Query Frame = 1 
Query:  217 MDPKLTEISQLFDRFKAAFLRKDFDSSSNLLSQLKVLLTGFRSLPPLFADTPNAIQELTIARDIYEHAVVLSVKIEDQDAFERDFFQLKPYYTDARNRLPQSPQ 528
            MDPKLTE+SQLF+RFKAA  R+DF++S+NLLSQLKVLLTGFRSLPPLF +TPNA+QELTIARD++EHAV+LSVKI DQ+AFERDFFQLKPYYTDA + LPQSPQ
Sbjct:    1 MDPKLTEVSQLFERFKAACTREDFNTSTNLLSQLKVLLTGFRSLPPLFENTPNAVQELTIARDVFEHAVLLSVKIGDQEAFERDFFQLKPYYTDASSCLPQSPQ 104
[Close]
BLAST of Pisum_sativum_v1_Contig2176 vs. TrEMBL
Match: D7KS89_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_474895 PE=4 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 3.982e-41
Identity = 83/104 (79.81%), Postives = 94/104 (90.38%), Query Frame = 1 
Query:  217 MDPKLTEISQLFDRFKAAFLRKDFDSSSNLLSQLKVLLTGFRSLPPLFADTPNAIQELTIARDIYEHAVVLSVKIEDQDAFERDFFQLKPYYTDARNRLPQSPQ 528
            MDP+LTE+SQ F+RFKAAF RKD+++ S+LLSQLKVLLT F SLPPLF ++PNA +ELTIARDIYEHAVVLSVK EDQDAFERDFFQLKPYY DARNR+P SPQ
Sbjct:    1 MDPQLTEVSQQFERFKAAFARKDYNTCSDLLSQLKVLLTKFTSLPPLFENSPNAAKELTIARDIYEHAVVLSVKTEDQDAFERDFFQLKPYYVDARNRIPSSPQ 104
[Close]
BLAST of Pisum_sativum_v1_Contig2176 vs. TrEMBL
Match: A9PA93_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_815024 PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 3.371e-40
Identity = 83/104 (79.81%), Postives = 93/104 (89.42%), Query Frame = 1 
Query:  217 MDPKLTEISQLFDRFKAAFLRKDFDSSSNLLSQLKVLLTGFRSLPPLFADTPNAIQELTIARDIYEHAVVLSVKIEDQDAFERDFFQLKPYYTDARNRLPQSPQ 528
            MDPKLTE+SQLF+RFKAA  R DF++S+NLLSQLKVLL GFRSLPPLF +TP+++QEL IARDIYEHAV+LSVKI DQDAFERDFFQLKPYYTDA  RL  SPQ
Sbjct:    1 MDPKLTEVSQLFERFKAACTRDDFNTSTNLLSQLKVLLIGFRSLPPLFENTPHSVQELIIARDIYEHAVLLSVKIGDQDAFERDFFQLKPYYTDAGGRLAPSPQ 104
[Close]
BLAST of Pisum_sativum_v1_Contig2176 vs. TrEMBL
Match: D7TVK9_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_25.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00019594001 PE=4 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 9.809e-40
Identity = 82/104 (78.85%), Postives = 89/104 (85.58%), Query Frame = 1 
Query:  217 MDPKLTEISQLFDRFKAAFLRKDFDSSSNLLSQLKVLLTGFRSLPPLFADTPNAIQELTIARDIYEHAVVLSVKIEDQDAFERDFFQLKPYYTDARNRLPQSPQ 528
            MDPKL E+SQ  +RFKAAF+R DFD+ + LLSQLKVLLT FRSLPPLF D+PNA+ EL IARDIYEHAVVLSVK EDQDAFERDFFQLKPYYTD   RLP SPQ
Sbjct:    1 MDPKLREVSQGLERFKAAFVRSDFDTCTKLLSQLKVLLTEFRSLPPLFEDSPNAVHELKIARDIYEHAVVLSVKTEDQDAFERDFFQLKPYYTDTGGRLPPSPQ 104
[Close]
BLAST of Pisum_sativum_v1_Contig2176 vs. TAIR peptide
Match: AT1G64520.1 (| Symbols: RPN12a | regulatory particle non-ATPase 12A | chr1:23956459-23958120 FORWARD LENGTH=267)

HSP 1 Score: 172.94 bits (437), Expect = 8.848e-44
Identity = 84/104 (80.77%), Postives = 95/104 (91.35%), Query Frame = 1 
Query:  217 MDPKLTEISQLFDRFKAAFLRKDFDSSSNLLSQLKVLLTGFRSLPPLFADTPNAIQELTIARDIYEHAVVLSVKIEDQDAFERDFFQLKPYYTDARNRLPQSPQ 528
            MDP+LTE+SQ F+RFKAAF RKD+++ S+LLSQLKVLLT F SLPPLF ++PNA +ELTIARDIYEHAVVLSVK EDQDAFERDFFQLKPYY DARNR+PQSPQ
Sbjct:    1 MDPQLTEVSQQFERFKAAFARKDYNTCSDLLSQLKVLLTKFTSLPPLFENSPNAAKELTIARDIYEHAVVLSVKTEDQDAFERDFFQLKPYYVDARNRIPQSPQ 104
[Close]
BLAST of Pisum_sativum_v1_Contig2176 vs. TAIR peptide
Match: AT5G42040.1 (| Symbols: RPN12b | regulatory particle non-ATPase 12B | chr5:16813835-16814749 REVERSE LENGTH=233)

HSP 1 Score: 54.299 bits (129), Expect = 4.587e-8
Identity = 25/36 (69.44%), Postives = 32/36 (88.89%), Query Frame = 1 
Query:  217 MDPKLTEISQLFDRFKAAFLRKDFDSSSNLLSQLKV 324
            MDP+L E+SQ F+RFKAAF+ KDFD+ S+LLSQLK+
Sbjct:    1 MDPQLMEVSQQFERFKAAFIIKDFDTCSSLLSQLKL 36
The following BLAST results are available for this feature:
BLAST of Pisum_sativum_v1_Contig2176 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Swissprot)
Total hits: 2
Match NameE-valueIdentityDescription
RP12A_ARATH8.208e-4380.7726S proteasome non-ATPase regulatory subunit RPN12... [more]
RP12B_ARATH4.255e-769.4426S proteasome non-ATPase regulatory subunit RPN12... [more]
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BLAST of Pisum_sativum_v1_Contig2176 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
B7FLL3_MEDTR1.613e-5095.19Putative uncharacterized protein OS=Medicago trunc... [more]
B7FL82_MEDTR1.613e-5095.19Putative uncharacterized protein OS=Medicago trunc... [more]
C6TLM9_SOYBN3.719e-4790.38Putative uncharacterized protein OS=Glycine max PE... [more]
C6T763_SOYBN4.111e-4688.46Putative uncharacterized protein OS=Glycine max PE... [more]
Q0GEA1_CAMSI5.557e-4383.6526S proteasome regulatory particle non-ATPase subu... [more]
D7MIN1_ARALY7.257e-4382.69Putative uncharacterized protein OS=Arabidopsis ly... [more]
A9PI71_POPTR1.238e-4281.73Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
D7KS89_ARALY3.982e-4179.81Putative uncharacterized protein OS=Arabidopsis ly... [more]
A9PA93_POPTR3.371e-4079.81Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
D7TVK9_VITVI9.809e-4078.85Whole genome shotgun sequence of line PN40024, sca... [more]
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BLAST of Pisum_sativum_v1_Contig2176 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide)
Total hits: 2
Match NameE-valueIdentityDescription
AT1G64520.18.848e-4480.77| Symbols: RPN12a | regulatory particle non-ATPase... [more]
AT5G42040.14.587e-869.44| Symbols: RPN12b | regulatory particle non-ATPase... [more]
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InterPro
Analysis Name: InterProScan analysis for Pisum sativum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 5..17
score
IPR00674626S proteasome non-ATPase regulatory subunit Rpn12PANTHERPTHR1238726S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 8coord: 1..105
score: 4.5

Sequences
The following sequences are available for this feature:

contig sequence

>Pisum_sativum_v1_Contig2176 ID=Pisum_sativum_v1_Contig2176; Name=Pisum_sativum_v1_Contig2176; organism=Pisum sativum; type=contig; length=528bp
GCTTTCTGTGTTCCTTTTCACCATCGCCACTAAGGTCTTGCAATCCGATT
CCACTTCAATCTTCTCCATTTCAGACGATTTCGCAAGCTTCAAACCATAC
TATATAGCATAAGCTTCCACAATAAGCGGGTCTTGAAATCCACTTCTCTT
CTCCGTCATCGCTGTCGTTCTTTTATTCGAAGCACTCAACAACTGCATTT
GCAAAATATCTAAGAAATGGATCCAAAATTAACCGAGATTTCTCAGCTCT
TCGATCGATTTAAGGCTGCGTTTCTCAGAAAAGACTTTGATTCCAGTTCC
AATCTCCTTTCCCAGCTTAAGGTGTTACTGACAGGGTTCAGAAGTCTTCC
ACCATTGTTTGCAGATACACCTAATGCTATTCAGGAGTTAACAATAGCAA
GGGATATATATGAGCATGCTGTTGTCCTCAGTGTAAAAATAGAGGATCAA
GATGCATTTGAAAGGGATTTCTTCCAGTTGAAACCTTATTATACAGATGC
TCGCAATCGCCTTCCACAATCTCCTCAG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: Cellular Component
TermDefinition
GO:0005838proteasome regulatory particle
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
Vocabulary: INTERPRO
TermDefinition
IPR00674626S_Psome_Rpn12