Pisum_sativum_v1_Contig2183

Contig Overview
NamePisum_sativum_v1_Contig2183
Unique NamePisum_sativum_v1_Contig2183
Typecontig
OrganismPisum sativum (pea)
Sequence length544
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
FG531282ESTFG531282:109..527 +Pisum sativum unigene v1n/a
GH720077ESTGH720077:1..544 -Pisum sativum unigene v1n/a
Unigenes
This contig is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Pisum sativum unigene v1Pisum sativum unigene v1contig
Analyses
This contig is derived from or has results from the following analyses
Analysis NameDate Performed
Pisum sativum unigene v12010-12-27
Homology Analysis: Pisum sativum unigene v1 vs Trembl2010-12-28
Homology Analysis: Pisum sativum unigene v1 vs Swissprot2010-12-28
Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide2011-02-03
InterProScan analysis for Pisum sativum unigene v12010-12-29
Relationships

The following EST feature(s) are a part of this contig:

Feature NameUnique NameSpeciesType
FG531282FG531282Pisum sativumEST
GH720077GH720077Pisum sativumEST


Homology
BLAST of Pisum_sativum_v1_Contig2183 vs. SwissProt
Match: C3H31_ARATH (Zinc finger CCCH domain-containing protein 31 OS=Arabidopsis thaliana GN=At2g47680 PE=2 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 8.682e-35
Identity = 72/152 (47.37%), Postives = 90/152 (59.21%), Query Frame = 2
Query:   62 GEVSPCAYFIRGSCSRGSSCPFLHTFQAKRPQCKFFFSLQGCRNGEFCVFSHDMDRPAV-LARQSICLPEDNTMSSASLLNLFPKSSDKSILILDDTDLRYSSCFACHYDPSKXXXXXXXXXXXXXXPSLTGVRILWGLNHPYQTIIAKAGK 514
            GE   C YF+ G C+RG  C F HT Q+ RP CKFF S QGCRNGE C+FSH M R          CLPE++  S++ LL+LFP SS+  IL+ DD+D+ ++S  A  Y   +               SL   RI WGLNHPYQTII+KAG+
Sbjct:  728 GEAPVCVYFLNGYCNRGGQCTFTHTLQSTRPACKFFASSQGCRNGESCLFSHAMRRRTTSYLPPPQCLPEEDGSSTSPLLDLFPTSSEGCILVFDDSDMHFTSSIANRYPSWRILSTSSSSETLFCDSSLADTRIFWGLNHPYQTIISKAGR 879          
BLAST of Pisum_sativum_v1_Contig2183 vs. SwissProt
Match: C3H4_ORYSJ (Zinc finger CCCH domain-containing protein 4 OS=Oryza sativa subsp. japonica GN=Os01g0256800 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 7.136e-21
Identity = 55/163 (33.74%), Postives = 78/163 (47.85%), Query Frame = 2
Query:   56 VSGEVSP------CAYFIRGSCSRGSSCPFLHTFQAKRPQCKFFFSLQGCRNGEFCVFSHDMDRPAVLARQSICLPEDNTMSSASLLNLFPKSSDKSILILDDTDLRYSSCFACHYDPSKXXXXXXXXXXXXXXPSLTGVRILWGLNHPYQTIIAKAGKTFIP 526
            V G V P      C +F+ GSC+RG +C F H+ +A RP CKFF +LQGCRNG  C FSHD       +  S    ++N  +S     L P + D  IL+++D  L+++     +YDP+K                  G++IL  L  P    I    K  +P
Sbjct:  716 VHGYVQPALENEMCVFFLNGSCNRGDTCHFSHSSRAPRPICKFFLTLQGCRNGNSCSFSHDSGSLVSSSITSGICSQENRATSVCCKRLLPAAGDGHILVMNDKSLQFACKLCNYYDPTKIIACTPGPHSFESDSVTKGLKILQNLADPSYLFIGGEHKLSVP 878          
BLAST of Pisum_sativum_v1_Contig2183 vs. TrEMBL
Match: B9SAR2_RICCO (ATP-dependent RNA helicase, putative OS=Ricinus communis GN=RCOM_1178050 PE=4 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 6.380e-42
Identity = 83/174 (47.70%), Postives = 106/174 (60.92%), Query Frame = 2
Query:    5 GDSFHHQPEDANSGNFHVSGEVSPCAYFIRGSCSRGSSCPFLHTFQAKRPQCKFFFSLQGCRNGEFCVFSHDMDRPAVLARQSICLPEDNTMSSASLLNLFPKSSDKSILILDDTDLRYSSCFACHYDPSKXXXXXXXXXXXXXXPSLTGVRILWGLNHPYQTIIAKAGKTFIP 526
            GD   +     N    HV+ E   C YF+ GSC++GS C F H+ QAK+P C++FF+LQGCRNGE C FSHD+         + C PED+ +++ SLL LFP SSD  IL+L+D+DL +S  FAC YDPSK              PSL GVRILW    P +TII+KAG+  IP
Sbjct:  719 GDPSGNDAGYVNEDVSHVNEEAPLCVYFVNGSCNKGSQCSFSHSLQAKKPACRYFFTLQGCRNGESCSFSHDIGSSVSSCSPAPCPPEDDDVNAVSLLQLFPTSSDGCILLLEDSDLHFSLNFACFYDPSKIISTTCMSETSLNDPSLNGVRILWEFRDPCRTIISKAGRNLIP 892          

HSP 2 Score: 23.483 bits (49), Expect = 6.380e-42
Identity = 8/13 (61.54%), Postives = 11/13 (84.62%), Query Frame = 3
Query:  504 KQGRHLFPWNEVQ 542
            K GR+L PW+EV+
Sbjct:  885 KAGRNLIPWSEVK 897          
BLAST of Pisum_sativum_v1_Contig2183 vs. TrEMBL
Match: D7U280_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_5.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00027995001 PE=4 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 8.032e-35
Identity = 78/176 (44.32%), Postives = 102/176 (57.95%), Query Frame = 2
Query:   23 QPEDANSGNFHV---SGEVSPCAYFIRGSCSRGSSCPFLHTF---QAKRPQCKFFFSLQGCRNGEFCVFSHDMDRPAV--LARQSICLPEDNTMSSASLLNLFPKSSDKSILILDDTDLRYSSCFACHYDPSKXXXXXXXXXXXXXXPSLTGVRILWGLNHPYQTIIAKAGKTFIP 526
            Q  + NS N H     G+ SPC +F+ GSC+RG+ CPF H+    + K P CKFFFSLQGCRNG+ C FSHD+D P+V   +    CLPED    +  LL  FP +    +L+LDDTDL ++   A  ++P K              PSLT V+ILWGL  PY+ II+  G+  IP
Sbjct:  701 QYTEKNSSNQHKVVNDGKASPCRFFVNGSCNRGNKCPFSHSLPVNEVKGPTCKFFFSLQGCRNGDSCFFSHDLD-PSVSEFSGSGECLPEDGDADAVLLLQFFPNALGGRVLVLDDTDLHFTINLAHKFNPFKIISTTCLPNISICDPSLTAVKILWGLREPYKAIISTEGENPIP 875          
BLAST of Pisum_sativum_v1_Contig2183 vs. TrEMBL
Match: D7LGQ4_ARALY (Zinc finger helicase family protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_483950 PE=4 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 7.518e-33
Identity = 76/164 (46.34%), Postives = 95/164 (57.93%), Query Frame = 2
Query:   23 QPEDANSGNFHVSGEVSPCAYFIRGSCSRGSSCPFLHTFQAKRPQCKFFFSLQGCRNGEFCVFSHDMDRPAVLAR-QSICLPEDNTMSSASLLNLFPKSSDKSILILDDTDLRYSSCFACHYDPSKXXXXXXXXXXXXXXPSLTGVRILWGLNHPYQTIIAKAG 511
            +PED     +   GE   C YF+ G C+RG  C F HT Q+  P CKFF SLQGCRNGE C+FSH M R A   R    CL E++  S++ LL+LFP SS+  IL+ DD+ +R++S  A  Y   +               SL   RI WGLNHPYQTII+KAG
Sbjct:  720 EPED-----YVEDGEAPVCVYFLNGFCNRGDQCTFSHTLQSTGPACKFFASLQGCRNGESCLFSHVMRRRATSYRLPPQCLAEEDGSSTSPLLDLFPTSSEGCILVFDDSAMRFTSSIANCYPSWRILATSSSSDTLLCDSSLANTRIFWGLNHPYQTIISKAG 878          
BLAST of Pisum_sativum_v1_Contig2183 vs. TrEMBL
Match: B9EV14_ORYSJ (Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_01156 PE=4 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 9.532e-20
Identity = 55/163 (33.74%), Postives = 78/163 (47.85%), Query Frame = 2
Query:   56 VSGEVSP------CAYFIRGSCSRGSSCPFLHTFQAKRPQCKFFFSLQGCRNGEFCVFSHDMDRPAVLARQSICLPEDNTMSSASLLNLFPKSSDKSILILDDTDLRYSSCFACHYDPSKXXXXXXXXXXXXXXPSLTGVRILWGLNHPYQTIIAKAGKTFIP 526
            V G V P      C +F+ GSC+RG +C F H+ +A RP CKFF +LQGCRNG  C FSHD       +  S    ++N  +S     L P + D  IL+++D  L+++     +YDP+K                  G++IL  L  P    I    K  +P
Sbjct:  728 VHGYVQPALENEMCVFFLNGSCNRGDTCHFSHSSRAPRPICKFFLTLQGCRNGNSCSFSHDSGSLVSSSITSGICSQENRATSVCCKRLLPAAGDGHILVMNDKSLQFACKLCNYYDPTKIIACTPGPHSFESDSVTKGLKILQNLADPSYLFIGGEHKLSVP 890          
BLAST of Pisum_sativum_v1_Contig2183 vs. TrEMBL
Match: B8ABU4_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_01237 PE=4 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.245e-19
Identity = 55/163 (33.74%), Postives = 78/163 (47.85%), Query Frame = 2
Query:   56 VSGEVSP------CAYFIRGSCSRGSSCPFLHTFQAKRPQCKFFFSLQGCRNGEFCVFSHDMDRPAVLARQSICLPEDNTMSSASLLNLFPKSSDKSILILDDTDLRYSSCFACHYDPSKXXXXXXXXXXXXXXPSLTGVRILWGLNHPYQTIIAKAGKTFIP 526
            V G V P      C +F+ GSC+RG +C F H+ +A RP CKFF +LQGCRNG  C FSHD       +  S    ++N  +S     L P + D  IL+++D  L+++     +YDP+K                  G++IL  L  P    I    K  +P
Sbjct:  530 VHGYVQPALENEMCVFFLNGSCNRGDTCHFSHSSRAPRPICKFFLTLQGCRNGSSCSFSHDSGSLVSSSITSGICSQENRATSVCCKRLLPAAGDGHILVMNDKSLQFACKLCNYYDPTKIIACTPGPHSFESDSVTKGLKILQNLADPSYLFIGGDHKLSVP 692          
BLAST of Pisum_sativum_v1_Contig2183 vs. TrEMBL
Match: B9MY17_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_679563 PE=4 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.428e-17
Identity = 45/89 (50.56%), Postives = 56/89 (62.92%), Query Frame = 2
Query:  260 LPEDNTMSSASLLNLFPKSSDKSILILDDTDLRYSSCFACHYDPSKXXXXXXXXXXXXXXPSLTGVRILWGLNHPYQTIIAKAGKTFIP 526
            +PED  +++ASLL   P SSD  +L+LDDTDL +SS  A HYDP K              PSL G+RILWGL+HPYQTII+    + IP
Sbjct:    1 MPEDGAVNAASLLRFLPTSSDGCVLLLDDTDLHFSSNLARHYDPCKIISTTCMSDTFMCDPSLMGIRILWGLHHPYQTIISTPRDSPIP 89          
BLAST of Pisum_sativum_v1_Contig2183 vs. TrEMBL
Match: C5XFV3_SORBI (Putative uncharacterized protein Sb03g009880 OS=Sorghum bicolor GN=Sb03g009880 PE=4 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.206e-14
Identity = 46/150 (30.67%), Postives = 67/150 (44.67%), Query Frame = 2
Query:   77 CAYFIRGSCSRGSSCPFLHTFQAKRPQCKFFFSLQGCRNGEFCVFSHDMDRPAVLARQSICLPEDNTMSSASLLNLFPKSSDKSILILDDTDLRYSSCFACHYDPSKXXXXXXXXXXXXXXPSLTGVRILWGLNHPYQTIIAKAGKTFIP 526
            C +F  GSC+ G++C F H+  A +P CKF+ +LQGCR+G  C +SHD          S    ++   +S     L P   D  IL+++D  L +SS  +  YD  K                  G++IL  L  P   I     K  +P
Sbjct:  708 CVFFANGSCNLGAACRFSHSSLAPKPVCKFYLTLQGCRSGNSCPYSHDFGSKVSAPVTSGICSQEGRATSLCCTRLLPADGDGYILVMNDKTLEFSSKLSQFYDVCKIVAGTPGLQSVESYSVPKGLKILENLADPSSLITGLEHKLPVP 857          
BLAST of Pisum_sativum_v1_Contig2183 vs. TAIR peptide
Match: AT2G47680.1 (| Symbols: | zinc finger (CCCH type) helicase family protein | chr2:19545828-19550871 REVERSE LENGTH=1015)

HSP 1 Score: 146.362 bits (368), Expect = 9.409e-36
Identity = 72/152 (47.37%), Postives = 90/152 (59.21%), Query Frame = 2
Query:   62 GEVSPCAYFIRGSCSRGSSCPFLHTFQAKRPQCKFFFSLQGCRNGEFCVFSHDMDRPAV-LARQSICLPEDNTMSSASLLNLFPKSSDKSILILDDTDLRYSSCFACHYDPSKXXXXXXXXXXXXXXPSLTGVRILWGLNHPYQTIIAKAGK 514
            GE   C YF+ G C+RG  C F HT Q+ RP CKFF S QGCRNGE C+FSH M R          CLPE++  S++ LL+LFP SS+  IL+ DD+D+ ++S  A  Y   +               SL   RI WGLNHPYQTII+KAG+
Sbjct:  728 GEAPVCVYFLNGYCNRGGQCTFTHTLQSTRPACKFFASSQGCRNGESCLFSHAMRRRTTSYLPPPQCLPEEDGSSTSPLLDLFPTSSEGCILVFDDSDMHFTSSIANRYPSWRILSTSSSSETLFCDSSLADTRIFWGLNHPYQTIISKAGR 879          
The following BLAST results are available for this feature:
BLAST of Pisum_sativum_v1_Contig2183 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Swissprot)
Total hits: 2
Match NameE-valueIdentityDescription
C3H31_ARATH8.682e-3547.37Zinc finger CCCH domain-containing protein 31 OS=A... [more]
C3H4_ORYSJ7.136e-2133.74Zinc finger CCCH domain-containing protein 4 OS=Or... [more]
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BLAST of Pisum_sativum_v1_Contig2183 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl)
Total hits: 7
Match NameE-valueIdentityDescription
B9SAR2_RICCO6.380e-4247.70ATP-dependent RNA helicase, putative OS=Ricinus co... [more]
D7U280_VITVI8.032e-3544.32Whole genome shotgun sequence of line PN40024, sca... [more]
D7LGQ4_ARALY7.518e-3346.34Zinc finger helicase family protein OS=Arabidopsis... [more]
B9EV14_ORYSJ9.532e-2033.74Putative uncharacterized protein OS=Oryza sativa s... [more]
B8ABU4_ORYSI1.245e-1933.74Putative uncharacterized protein OS=Oryza sativa s... [more]
B9MY17_POPTR4.428e-1750.56Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
C5XFV3_SORBI1.206e-1430.67Putative uncharacterized protein Sb03g009880 OS=So... [more]
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BLAST of Pisum_sativum_v1_Contig2183 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide)
Total hits: 1
Match NameE-valueIdentityDescription
AT2G47680.19.409e-3647.37| Symbols: | zinc finger (CCCH type) helicase fam... [more]
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InterPro
Analysis Name: InterProScan analysis for Pisum sativum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000571Zinc finger, CCCH-typePFAMPF00642zf-CCCHcoord: 24..44
score: 1.5
IPR000571Zinc finger, CCCH-typeSMARTSM00356no descriptioncoord: 21..46
score: 0.0057coord: 48..74
score:
IPR000571Zinc finger, CCCH-typePROFILEPS50103ZF_C3H1coord: 20..47
score: 13.901coord: 48..75
score: 12
NoneNo IPR availablePANTHERPTHR13119FAMILY NOT NAMEDcoord: 26..73
score: 0.0
NoneNo IPR availablePANTHERPTHR13119:SF6SUBFAMILY NOT NAMEDcoord: 26..73
score: 0.0
NoneNo IPR availableSEGsegsegcoord: 133..146
score
NoneNo IPR availableSUPERFAMILY90229CCCH zinc fingercoord: 45..80
score: 0.00014coord: 18..44
score: 0.0

Sequences
The following sequences are available for this feature:

contig sequence

>Pisum_sativum_v1_Contig2183 ID=Pisum_sativum_v1_Contig2183; Name=Pisum_sativum_v1_Contig2183; organism=Pisum sativum; type=contig; length=544bp
CCTAGGTGATTCTTTTCACCATCAACCAGAAGATGCTAACAGCGGTAATT
TCCACGTCAGCGGGGAGGTTTCTCCTTGTGCTTACTTCATTCGTGGATCC
TGCAGCAGAGGCAGTTCATGTCCATTTTTGCACACATTTCAGGCTAAGAG
ACCACAGTGCAAGTTCTTCTTTTCATTGCAGGGTTGCCGAAATGGAGAAT
TTTGTGTGTTTTCACATGATATGGACCGACCGGCAGTGTTGGCCCGTCAA
AGCATCTGCCTGCCAGAAGATAATACAATGAGTTCTGCTTCTCTTCTGAA
CTTGTTTCCCAAATCCAGTGACAAATCAATTCTGATACTGGATGACACAG
ATTTGCGTTACTCCTCATGCTTTGCTTGCCACTATGATCCATCCAAAATA
ATTTCAACTACAAGTGTGTCAGAAATAACCTCTACTGAACCATCTCTTAC
AGGAGTCAGAATTTTATGGGGTCTAAATCATCCTTACCAAACAATCATAG
CCAAAGCAGGGAAGACATTTATTCCCTTGGAATGAAGTTCAATG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0008270zinc ion binding
Vocabulary: INTERPRO
TermDefinition
IPR000571Znf_CCCH