Pisum_sativum_v1_Contig2183
Contig Overview
Alignments
The following features are aligned
Unigenes
This contig is part of the following unigenes:
Analyses
This contig is derived from or has results from the following analyses
Relationships
The following EST feature(s) are a part of this contig:
Homology
BLAST of Pisum_sativum_v1_Contig2183 vs. SwissProt
Match: C3H31_ARATH (Zinc finger CCCH domain-containing protein 31 OS=Arabidopsis thaliana GN=At2g47680 PE=2 SV=2) HSP 1 Score: 146.362 bits (368), Expect = 8.682e-35 Identity = 72/152 (47.37%), Postives = 90/152 (59.21%), Query Frame = 2 Query: 62 GEVSPCAYFIRGSCSRGSSCPFLHTFQAKRPQCKFFFSLQGCRNGEFCVFSHDMDRPAV-LARQSICLPEDNTMSSASLLNLFPKSSDKSILILDDTDLRYSSCFACHYDPSKXXXXXXXXXXXXXXPSLTGVRILWGLNHPYQTIIAKAGK 514 GE C YF+ G C+RG C F HT Q+ RP CKFF S QGCRNGE C+FSH M R CLPE++ S++ LL+LFP SS+ IL+ DD+D+ ++S A Y + SL RI WGLNHPYQTII+KAG+ Sbjct: 728 GEAPVCVYFLNGYCNRGGQCTFTHTLQSTRPACKFFASSQGCRNGESCLFSHAMRRRTTSYLPPPQCLPEEDGSSTSPLLDLFPTSSEGCILVFDDSDMHFTSSIANRYPSWRILSTSSSSETLFCDSSLADTRIFWGLNHPYQTIISKAGR 879
BLAST of Pisum_sativum_v1_Contig2183 vs. SwissProt
Match: C3H4_ORYSJ (Zinc finger CCCH domain-containing protein 4 OS=Oryza sativa subsp. japonica GN=Os01g0256800 PE=2 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 7.136e-21 Identity = 55/163 (33.74%), Postives = 78/163 (47.85%), Query Frame = 2 Query: 56 VSGEVSP------CAYFIRGSCSRGSSCPFLHTFQAKRPQCKFFFSLQGCRNGEFCVFSHDMDRPAVLARQSICLPEDNTMSSASLLNLFPKSSDKSILILDDTDLRYSSCFACHYDPSKXXXXXXXXXXXXXXPSLTGVRILWGLNHPYQTIIAKAGKTFIP 526 V G V P C +F+ GSC+RG +C F H+ +A RP CKFF +LQGCRNG C FSHD + S ++N +S L P + D IL+++D L+++ +YDP+K G++IL L P I K +P Sbjct: 716 VHGYVQPALENEMCVFFLNGSCNRGDTCHFSHSSRAPRPICKFFLTLQGCRNGNSCSFSHDSGSLVSSSITSGICSQENRATSVCCKRLLPAAGDGHILVMNDKSLQFACKLCNYYDPTKIIACTPGPHSFESDSVTKGLKILQNLADPSYLFIGGEHKLSVP 878
BLAST of Pisum_sativum_v1_Contig2183 vs. TrEMBL
Match: B9SAR2_RICCO (ATP-dependent RNA helicase, putative OS=Ricinus communis GN=RCOM_1178050 PE=4 SV=1) HSP 1 Score: 171.785 bits (434), Expect = 6.380e-42 Identity = 83/174 (47.70%), Postives = 106/174 (60.92%), Query Frame = 2 Query: 5 GDSFHHQPEDANSGNFHVSGEVSPCAYFIRGSCSRGSSCPFLHTFQAKRPQCKFFFSLQGCRNGEFCVFSHDMDRPAVLARQSICLPEDNTMSSASLLNLFPKSSDKSILILDDTDLRYSSCFACHYDPSKXXXXXXXXXXXXXXPSLTGVRILWGLNHPYQTIIAKAGKTFIP 526 GD + N HV+ E C YF+ GSC++GS C F H+ QAK+P C++FF+LQGCRNGE C FSHD+ + C PED+ +++ SLL LFP SSD IL+L+D+DL +S FAC YDPSK PSL GVRILW P +TII+KAG+ IP Sbjct: 719 GDPSGNDAGYVNEDVSHVNEEAPLCVYFVNGSCNKGSQCSFSHSLQAKKPACRYFFTLQGCRNGESCSFSHDIGSSVSSCSPAPCPPEDDDVNAVSLLQLFPTSSDGCILLLEDSDLHFSLNFACFYDPSKIISTTCMSETSLNDPSLNGVRILWEFRDPCRTIISKAGRNLIP 892 HSP 2 Score: 23.483 bits (49), Expect = 6.380e-42 Identity = 8/13 (61.54%), Postives = 11/13 (84.62%), Query Frame = 3 Query: 504 KQGRHLFPWNEVQ 542 K GR+L PW+EV+ Sbjct: 885 KAGRNLIPWSEVK 897
BLAST of Pisum_sativum_v1_Contig2183 vs. TrEMBL
Match: D7U280_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_5.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00027995001 PE=4 SV=1) HSP 1 Score: 150.214 bits (378), Expect = 8.032e-35 Identity = 78/176 (44.32%), Postives = 102/176 (57.95%), Query Frame = 2 Query: 23 QPEDANSGNFHV---SGEVSPCAYFIRGSCSRGSSCPFLHTF---QAKRPQCKFFFSLQGCRNGEFCVFSHDMDRPAV--LARQSICLPEDNTMSSASLLNLFPKSSDKSILILDDTDLRYSSCFACHYDPSKXXXXXXXXXXXXXXPSLTGVRILWGLNHPYQTIIAKAGKTFIP 526 Q + NS N H G+ SPC +F+ GSC+RG+ CPF H+ + K P CKFFFSLQGCRNG+ C FSHD+D P+V + CLPED + LL FP + +L+LDDTDL ++ A ++P K PSLT V+ILWGL PY+ II+ G+ IP Sbjct: 701 QYTEKNSSNQHKVVNDGKASPCRFFVNGSCNRGNKCPFSHSLPVNEVKGPTCKFFFSLQGCRNGDSCFFSHDLD-PSVSEFSGSGECLPEDGDADAVLLLQFFPNALGGRVLVLDDTDLHFTINLAHKFNPFKIISTTCLPNISICDPSLTAVKILWGLREPYKAIISTEGENPIP 875
BLAST of Pisum_sativum_v1_Contig2183 vs. TrEMBL
Match: D7LGQ4_ARALY (Zinc finger helicase family protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_483950 PE=4 SV=1) HSP 1 Score: 143.665 bits (361), Expect = 7.518e-33 Identity = 76/164 (46.34%), Postives = 95/164 (57.93%), Query Frame = 2 Query: 23 QPEDANSGNFHVSGEVSPCAYFIRGSCSRGSSCPFLHTFQAKRPQCKFFFSLQGCRNGEFCVFSHDMDRPAVLAR-QSICLPEDNTMSSASLLNLFPKSSDKSILILDDTDLRYSSCFACHYDPSKXXXXXXXXXXXXXXPSLTGVRILWGLNHPYQTIIAKAG 511 +PED + GE C YF+ G C+RG C F HT Q+ P CKFF SLQGCRNGE C+FSH M R A R CL E++ S++ LL+LFP SS+ IL+ DD+ +R++S A Y + SL RI WGLNHPYQTII+KAG Sbjct: 720 EPED-----YVEDGEAPVCVYFLNGFCNRGDQCTFSHTLQSTGPACKFFASLQGCRNGESCLFSHVMRRRATSYRLPPQCLAEEDGSSTSPLLDLFPTSSEGCILVFDDSAMRFTSSIANCYPSWRILATSSSSDTLLCDSSLANTRIFWGLNHPYQTIISKAG 878
BLAST of Pisum_sativum_v1_Contig2183 vs. TrEMBL
Match: B9EV14_ORYSJ (Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_01156 PE=4 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 9.532e-20 Identity = 55/163 (33.74%), Postives = 78/163 (47.85%), Query Frame = 2 Query: 56 VSGEVSP------CAYFIRGSCSRGSSCPFLHTFQAKRPQCKFFFSLQGCRNGEFCVFSHDMDRPAVLARQSICLPEDNTMSSASLLNLFPKSSDKSILILDDTDLRYSSCFACHYDPSKXXXXXXXXXXXXXXPSLTGVRILWGLNHPYQTIIAKAGKTFIP 526 V G V P C +F+ GSC+RG +C F H+ +A RP CKFF +LQGCRNG C FSHD + S ++N +S L P + D IL+++D L+++ +YDP+K G++IL L P I K +P Sbjct: 728 VHGYVQPALENEMCVFFLNGSCNRGDTCHFSHSSRAPRPICKFFLTLQGCRNGNSCSFSHDSGSLVSSSITSGICSQENRATSVCCKRLLPAAGDGHILVMNDKSLQFACKLCNYYDPTKIIACTPGPHSFESDSVTKGLKILQNLADPSYLFIGGEHKLSVP 890
BLAST of Pisum_sativum_v1_Contig2183 vs. TrEMBL
Match: B8ABU4_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_01237 PE=4 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 1.245e-19 Identity = 55/163 (33.74%), Postives = 78/163 (47.85%), Query Frame = 2 Query: 56 VSGEVSP------CAYFIRGSCSRGSSCPFLHTFQAKRPQCKFFFSLQGCRNGEFCVFSHDMDRPAVLARQSICLPEDNTMSSASLLNLFPKSSDKSILILDDTDLRYSSCFACHYDPSKXXXXXXXXXXXXXXPSLTGVRILWGLNHPYQTIIAKAGKTFIP 526 V G V P C +F+ GSC+RG +C F H+ +A RP CKFF +LQGCRNG C FSHD + S ++N +S L P + D IL+++D L+++ +YDP+K G++IL L P I K +P Sbjct: 530 VHGYVQPALENEMCVFFLNGSCNRGDTCHFSHSSRAPRPICKFFLTLQGCRNGSSCSFSHDSGSLVSSSITSGICSQENRATSVCCKRLLPAAGDGHILVMNDKSLQFACKLCNYYDPTKIIACTPGPHSFESDSVTKGLKILQNLADPSYLFIGGDHKLSVP 692
BLAST of Pisum_sativum_v1_Contig2183 vs. TrEMBL
Match: B9MY17_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_679563 PE=4 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 4.428e-17 Identity = 45/89 (50.56%), Postives = 56/89 (62.92%), Query Frame = 2 Query: 260 LPEDNTMSSASLLNLFPKSSDKSILILDDTDLRYSSCFACHYDPSKXXXXXXXXXXXXXXPSLTGVRILWGLNHPYQTIIAKAGKTFIP 526 +PED +++ASLL P SSD +L+LDDTDL +SS A HYDP K PSL G+RILWGL+HPYQTII+ + IP Sbjct: 1 MPEDGAVNAASLLRFLPTSSDGCVLLLDDTDLHFSSNLARHYDPCKIISTTCMSDTFMCDPSLMGIRILWGLHHPYQTIISTPRDSPIP 89
BLAST of Pisum_sativum_v1_Contig2183 vs. TrEMBL
Match: C5XFV3_SORBI (Putative uncharacterized protein Sb03g009880 OS=Sorghum bicolor GN=Sb03g009880 PE=4 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.206e-14 Identity = 46/150 (30.67%), Postives = 67/150 (44.67%), Query Frame = 2 Query: 77 CAYFIRGSCSRGSSCPFLHTFQAKRPQCKFFFSLQGCRNGEFCVFSHDMDRPAVLARQSICLPEDNTMSSASLLNLFPKSSDKSILILDDTDLRYSSCFACHYDPSKXXXXXXXXXXXXXXPSLTGVRILWGLNHPYQTIIAKAGKTFIP 526 C +F GSC+ G++C F H+ A +P CKF+ +LQGCR+G C +SHD S ++ +S L P D IL+++D L +SS + YD K G++IL L P I K +P Sbjct: 708 CVFFANGSCNLGAACRFSHSSLAPKPVCKFYLTLQGCRSGNSCPYSHDFGSKVSAPVTSGICSQEGRATSLCCTRLLPADGDGYILVMNDKTLEFSSKLSQFYDVCKIVAGTPGLQSVESYSVPKGLKILENLADPSSLITGLEHKLPVP 857
BLAST of Pisum_sativum_v1_Contig2183 vs. TAIR peptide
Match: AT2G47680.1 (| Symbols: | zinc finger (CCCH type) helicase family protein | chr2:19545828-19550871 REVERSE LENGTH=1015) HSP 1 Score: 146.362 bits (368), Expect = 9.409e-36 Identity = 72/152 (47.37%), Postives = 90/152 (59.21%), Query Frame = 2 Query: 62 GEVSPCAYFIRGSCSRGSSCPFLHTFQAKRPQCKFFFSLQGCRNGEFCVFSHDMDRPAV-LARQSICLPEDNTMSSASLLNLFPKSSDKSILILDDTDLRYSSCFACHYDPSKXXXXXXXXXXXXXXPSLTGVRILWGLNHPYQTIIAKAGK 514 GE C YF+ G C+RG C F HT Q+ RP CKFF S QGCRNGE C+FSH M R CLPE++ S++ LL+LFP SS+ IL+ DD+D+ ++S A Y + SL RI WGLNHPYQTII+KAG+ Sbjct: 728 GEAPVCVYFLNGYCNRGGQCTFTHTLQSTRPACKFFASSQGCRNGESCLFSHAMRRRTTSYLPPPQCLPEEDGSSTSPLLDLFPTSSEGCILVFDDSDMHFTSSIANRYPSWRILSTSSSSETLFCDSSLADTRIFWGLNHPYQTIISKAGR 879 The following BLAST results are available for this feature:
BLAST of Pisum_sativum_v1_Contig2183 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Swissprot) Total hits: 2
BLAST of Pisum_sativum_v1_Contig2183 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl) Total hits: 7
BLAST of Pisum_sativum_v1_Contig2183 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide) Total hits: 1
InterPro
Analysis Name: InterProScan analysis for Pisum sativum unigene v1
Date Performed: 2010-12-29
Sequences
The
following sequences are available for this feature:
contig sequence >Pisum_sativum_v1_Contig2183 ID=Pisum_sativum_v1_Contig2183; Name=Pisum_sativum_v1_Contig2183; organism=Pisum sativum; type=contig; length=544bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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