Pisum_sativum_v1_Contig2230

Contig Overview
NamePisum_sativum_v1_Contig2230
Unique NamePisum_sativum_v1_Contig2230
Typecontig
OrganismPisum sativum (pea)
Sequence length679
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
EX569261ESTEX569261:1..448 +
EX570571ESTEX570571:44..679 +
Unigenes
This contig is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Pisum sativum unigene v1Pisum sativum unigene v1contig
Analyses
This contig is derived from or has results from the following analyses
Analysis NameDate Performed
Pisum sativum unigene v12010-12-27
Homology Analysis: Pisum sativum unigene v1 vs Trembl2010-12-28
Relationships

The following EST feature(s) are a part of this contig:

Feature NameUnique NameSpeciesType
EX569261EX569261Pisum sativumEST
EX570571EX570571Pisum sativumEST


Homology
[Close]
BLAST of Pisum_sativum_v1_Contig2230 vs. TrEMBL
Match: C6T7L7_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.321e-12
Identity = 39/59 (66.10%), Postives = 43/59 (72.88%), Query Frame = 3 
Query:    3 SDEELPVSAEHLASTLPSVIDHSSENDDEQEPLVELSNPSDTGMSNPSDTDIDIPGNFD 179
            SDEELP +AEH  + LP  I HSS N++EQEPLVEL        SNPSDTDIDIPGNFD
Sbjct:  301 SDEELPETAEHFTNVLPLGIGHSSTNENEQEPLVEL--------SNPSDTDIDIPGNFD 351
[Close]
BLAST of Pisum_sativum_v1_Contig2230 vs. TrEMBL
Match: B9GN85_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_643943 PE=4 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 4.185e-7
Identity = 30/58 (51.72%), Postives = 38/58 (65.52%), Query Frame = 3 
Query:    6 DEELPVSAEHLASTLPSVIDHSSENDDEQEPLVELSNPSDTGMSNPSDTDIDIPGNFD 179
            DE    + E + +TLP  + HSS +DDEQEPLVEL        +NPSDT++DIP NFD
Sbjct:  231 DEVFQEATEDITNTLPMGVIHSSGDDDEQEPLVEL--------ANPSDTELDIPANFD 280
[Close]
BLAST of Pisum_sativum_v1_Contig2230 vs. TrEMBL
Match: B9SN00_RICCO (GATA transcription factor, putative OS=Ricinus communis GN=RCOM_0482890 PE=4 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 7.139e-7
Identity = 30/55 (54.55%), Postives = 37/55 (67.27%), Query Frame = 3 
Query:   15 LPVSAEHLASTLPSVIDHSSENDDEQEPLVELSNPSDTGMSNPSDTDIDIPGNFD 179
            L  ++E L STLP  + HSS +DD+QEPLVEL        +NPSD D+DIP NFD
Sbjct:  281 LQEASEDLTSTLPMRVVHSSADDDDQEPLVEL--------ANPSDADLDIPSNFD 327
The following BLAST results are available for this feature:
BLAST of Pisum_sativum_v1_Contig2230 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl)
Total hits: 3
Match NameE-valueIdentityDescription
C6T7L7_SOYBN4.321e-1266.10Putative uncharacterized protein OS=Glycine max PE... [more]
B9GN85_POPTR4.185e-751.72Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
B9SN00_RICCO7.139e-754.55GATA transcription factor, putative OS=Ricinus com... [more]
back to top
Sequences
The following sequences are available for this feature:

contig sequence

>Pisum_sativum_v1_Contig2230 ID=Pisum_sativum_v1_Contig2230; Name=Pisum_sativum_v1_Contig2230; organism=Pisum sativum; type=contig; length=679bp
CAAGTGATGAGGAATTACCTGTATCTGCAGAGCACTTAGCAAGCACATTG
CCATCGGTGATTGATCATTCTTCGGAAAATGACGATGAGCAGGAACCCCT
TGTCGAGCTTTCTAACCCTTCAGATACAGGAATGTCTAATCCTTCAGATA
CAGATATTGACATTCCTGGAAACTTTGATTAGAAGTACTAAGTAATTCAT
TATGTGGGTGTTTTAGACAATGGTCCATTTGTAGAATATTCTTCATGTAG
ATATGGGATGCAGCTCTCGGAGCAGTGATATGAGACAATTTGGACAGTTG
GGTTATGTTAGTCTTACTGTATGTAACAGCAAAATGAAGTGATAATCCTA
CCAAAGGTGGAGAAGCTCTGCTCTTCCAGCCTGACATTAATTATTCTGCA
ATGTTGATGCTGGTAGAAGCGTCAAATATTGTTTGTGTAAAAATTATTTG
ACTATCTGTAAATAAGATGATGTCCGATTGGCTGACTTCGACGATTTCAT
TGAGATCAAAGCTTTACTACATGAAATTTAGAGATAAAACTTTGGTGATA
TGTTATGCCATCCAAACGATGGATCTCTAGTGTGCTAGTGCCCACAATTG
CTGAAGTTTCCAAACTTGTGCTGCTGAAGAGAAGAACATTCAGATGCTTC
TTACAAATAGACATGTTTCAAACTGTTGT
back to top