Pisum_sativum_v1_Contig2355

Contig Overview


Name	Pisum_sativum_v1_Contig2355
Unique Name	Pisum_sativum_v1_Contig2355
Type	contig
Organism	Pisum sativum (pea)
Sequence length	827

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
AM161904	EST	AM161904:28..448 +	Pisum sativum unigene v1	n/a
GH719109	EST	GH719109:365..681 -	Pisum sativum unigene v1	n/a
CD860258	EST	CD860258:349..677 -	Pisum sativum unigene v1	n/a
CD860174	EST	CD860174:30..675 +	Pisum sativum unigene v1	n/a
CD861203	EST	CD861203:30..680 +	Pisum sativum unigene v1	n/a
CD860485	EST	CD860485:29..677 -	Pisum sativum unigene v1	n/a
EX569014	EST	EX569014:1..760 +	Pisum sativum unigene v1	n/a
AA430948	EST	AA430948:334..761 +	Pisum sativum unigene v1	n/a
FG534191	EST	FG534191:393..827 +	Pisum sativum unigene v1	n/a

Unigenes

This contig is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Pisum sativum unigene v1	Pisum sativum unigene v1	contig

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Pisum sativum unigene v1	2010-12-27
KEGG analysis for Pisum sativum unigene v1	2011-01-05
Homology Analysis: Pisum sativum unigene v1 vs Trembl	2010-12-28
Homology Analysis: Pisum sativum unigene v1 vs Swissprot	2010-12-28
Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide	2011-02-03
InterProScan analysis for Pisum sativum unigene v1	2010-12-29

Relationships

The following EST feature(s) are a part of this contig:


Feature Name	Unique Name	Species	Type
AM161904	AM161904	Pisum sativum	EST
GH719109	GH719109	Pisum sativum	EST
CD860258	CD860258	Pisum sativum	EST
CD860174	CD860174	Pisum sativum	EST
CD861203	CD861203	Pisum sativum	EST
CD860485	CD860485	Pisum sativum	EST
EX569014	EX569014	Pisum sativum	EST
AA430948	AA430948	Pisum sativum	EST
FG534191	FG534191	Pisum sativum	EST

Homology

[Close]

BLAST of Pisum_sativum_v1_Contig2355 vs. SwissProt
Match: HMGL_IPONI (HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.086e-13
Identity = 36/68 (52.94%), Postives = 44/68 (64.71%), Query Frame = 2

Query:  155 AFFVFLEDFRKTFKAENPNVKAVSAVGKAGGEKWKSLTXXXXXXXXXXXXXXXVEYEKLMNAYNNKAA 358
            AFFVF+EDFRKT+K ++PN K+V+ VGKAGG+KWK LT                EYEK + AYN K A
Sbjct:   42 AFFVFMEDFRKTYKEKHPNNKSVAVVGKAGGDKWKQLTAAEKAPFISKAEKRKQEYEKNLQAYNKKQA 109

[Close]

BLAST of Pisum_sativum_v1_Contig2355 vs. SwissProt
Match: HMGL_SOYBN (HMG1/2-like protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.999e-12
Identity = 36/68 (52.94%), Postives = 42/68 (61.76%), Query Frame = 2

Query:  155 AFFVFLEDFRKTFKAENPNVKAVSAVGKAGGEKWKSLTXXXXXXXXXXXXXXXVEYEKLMNAYNNKAA 358
            AFFVF+E+FRK F  E+P  KAVSAVGKA G KWK+++               VEYEK M AYN K A
Sbjct:   50 AFFVFMEEFRKVFNKEHPENKAVSAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYNKKQA 117

[Close]

BLAST of Pisum_sativum_v1_Contig2355 vs. SwissProt
Match: MNB1B_MAIZE (DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 4.299e-10
Identity = 31/64 (48.44%), Postives = 41/64 (64.06%), Query Frame = 2

Query:  155 AFFVFLEDFRKTFKAENPNVKAVSAVGKAGGEKWKSLTXXXXXXXXXXXXXXXVEYEKLMNAYN 346
            AFFVF+E+FRK FK +NP  K+V+AVGKA G++WKSL+               +EY K + AYN
Sbjct:   47 AFFVFMEEFRKEFKEKNPKNKSVAAVGKAAGDRWKSLSESDKAPYVAKANKLKLEYNKAIAAYN 110

[Close]

BLAST of Pisum_sativum_v1_Contig2355 vs. SwissProt
Match: HMGL_VICFA (HMG1/2-like protein OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 2.133e-9
Identity = 31/66 (46.97%), Postives = 41/66 (62.12%), Query Frame = 2

Query:  155 AFFVFLEDFRKTFKAENPNVKAVSAVGKAGGEKWKSLTXXXXXXXXXXXXXXXVEYEKLMNAYNNK 352
            AFFVF+ DFR+ +K ++PN K+V+AVGKA GE+WKSL+                EYE  + AYN K
Sbjct:   51 AFFVFMADFREQYKKDHPNNKSVAAVGKACGEEWKSLSEEEKAPYVDRALKKKEEYEITLQAYNKK 116

[Close]

BLAST of Pisum_sativum_v1_Contig2355 vs. SwissProt
Match: HMGL_WHEAT (HMG1/2-like protein OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 1.059e-8
Identity = 30/64 (46.88%), Postives = 39/64 (60.94%), Query Frame = 2

Query:  155 AFFVFLEDFRKTFKAENPNVKAVSAVGKAGGEKWKSLTXXXXXXXXXXXXXXXVEYEKLMNAYN 346
            AFFVF+ +FR+ FK +NP  K+V+AVGKA GE+WKSL+                EY K + AYN
Sbjct:   48 AFFVFMGEFREEFKQKNPKNKSVAAVGKAAGERWKSLSESEKAPYVAKANKLKGEYNKAIAAYN 111

[Close]

BLAST of Pisum_sativum_v1_Contig2355 vs. TrEMBL
Match: C6SVP1_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 2.593e-21
Identity = 59/119 (49.58%), Postives = 65/119 (54.62%), Query Frame = 2

Query:    2 GTGKTSREVLKPVDDRKVGKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFFVFLEDFRKTFKAENPNVKAVSAVGKAGGEKWKSLTXXXXXXXXXXXXXXXVEYEKLMNAYNNKAA 358
            G  + S+E LKPVDDRKVGKR                              AFFVFLE+FRKTFKAENPNVKAVS VGKAGGEKWKSL+                EYEKL+ AY+ K A
Sbjct:    8 GAARASKESLKPVDDRKVGKRKASGKPGRSSAPKKEKKAKKDPNKPKRPPSAFFVFLEEFRKTFKAENPNVKAVSVVGKAGGEKWKSLSSAEKAPYESKAAKRKAEYEKLIKAYDKKQA 126

[Close]

BLAST of Pisum_sativum_v1_Contig2355 vs. TrEMBL
Match: Q3EAL6_ARATH (AT3G51880 protein OS=Arabidopsis thaliana GN=AT3G51880 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 6.387e-20
Identity = 56/112 (50.00%), Postives = 62/112 (55.36%), Query Frame = 2

Query:   11 KTSREVLKPVDDRKVGKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFFVFLEDFRKTFKAENPNVKAVSAVGKAGGEKWKSLTXXXXXXXXXXXXXXXVEYEKLMNAYN 346
            KT++E LKPVDDRKVGKR                              AFFVFLEDFR TFK ENPNVKAVSAVGKAGG+KWKS++                EYEK M+AYN
Sbjct:   11 KTTKEALKPVDDRKVGKRKAPAEKPTKRETRKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAYN 122

[Close]

BLAST of Pisum_sativum_v1_Contig2355 vs. TrEMBL
Match: O49595_ARATH (At3g51880/ORF13 OS=Arabidopsis thaliana GN=HMGalpha PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 6.387e-20
Identity = 56/112 (50.00%), Postives = 62/112 (55.36%), Query Frame = 2

Query:   11 KTSREVLKPVDDRKVGKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFFVFLEDFRKTFKAENPNVKAVSAVGKAGGEKWKSLTXXXXXXXXXXXXXXXVEYEKLMNAYN 346
            KT++E LKPVDDRKVGKR                              AFFVFLEDFR TFK ENPNVKAVSAVGKAGG+KWKS++                EYEK M+AYN
Sbjct:   11 KTTKEALKPVDDRKVGKRKAPAEKPTKRETRKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAYN 122

[Close]

BLAST of Pisum_sativum_v1_Contig2355 vs. TrEMBL
Match: D7LTZ6_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_323737 PE=4 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 6.387e-20
Identity = 56/112 (50.00%), Postives = 62/112 (55.36%), Query Frame = 2

Query:   11 KTSREVLKPVDDRKVGKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFFVFLEDFRKTFKAENPNVKAVSAVGKAGGEKWKSLTXXXXXXXXXXXXXXXVEYEKLMNAYN 346
            KT++E LKPVDDRKVGKR                              AFFVFLEDFR TFK ENPNVKAVSAVGKAGG+KWKS++                EYEK M+AYN
Sbjct:   11 KTTKEALKPVDDRKVGKRKAPAEKATKRETRKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAYN 122

[Close]

BLAST of Pisum_sativum_v1_Contig2355 vs. TrEMBL
Match: Q1EMR5_PLAMJ (HMG-protein (Fragment) OS=Plantago major GN=hmg1 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.089e-19
Identity = 58/112 (51.79%), Postives = 62/112 (55.36%), Query Frame = 2

Query:   20 REVLKPVDDRKVGKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-AFFVFLEDFRKTFKAENPNVKAVSAVGKAGGEKWKSLTXXXXXXXXXXXXXXXVEYEKLMNAYNNK 352
            +E LKPVDDRKVGKR                               AFFVFLE+FR+TFK ENPN+KAVSAVGKAGGEKWKSLT                EYEKLMNAYN K
Sbjct:   59 KETLKPVDDRKVGKRKAAAAPKVKKPAAKKDKKAKKDPNKPKRPPSAFFVFLEEFRQTFKKENPNIKAVSAVGKAGGEKWKSLTDAEKAPYEAKAAKRKSEYEKLMNAYNKK 170

[Close]

BLAST of Pisum_sativum_v1_Contig2355 vs. TrEMBL
Match: C6SXC8_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 2.427e-19
Identity = 57/119 (47.90%), Postives = 62/119 (52.10%), Query Frame = 2

Query:    2 GTGKTSREVLKPVDDRKVGKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFFVFLEDFRKTFKAENPNVKAVSAVGKAGGEKWKSLTXXXXXXXXXXXXXXXVEYEKLMNAYNNKAA 358
            G  + S+E LKPVDDRKVGKR                              AF VFLE+FRKTFKAENP VKAVS VGKAGGEKWKSL+                EYEKL+ AY  K A
Sbjct:    8 GAARPSKESLKPVDDRKVGKRKASGKPEKSRAPKKEKKAKKDPNKPKRPPSAFLVFLEEFRKTFKAENPLVKAVSVVGKAGGEKWKSLSSAEKAPYEAKAAKRKAEYEKLIKAYEKKQA 126

[Close]

BLAST of Pisum_sativum_v1_Contig2355 vs. TrEMBL
Match: A5BH86_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_023651 PE=4 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 5.978e-18
Identity = 53/116 (45.69%), Postives = 62/116 (53.45%), Query Frame = 2

Query:   11 KTSREVLKPVDDRKVGKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--AFFVFLEDFRKTFKAENPNVKAVSAVGKAGGEKWKSLTXXXXXXXXXXXXXXXVEYEKLMNAYNNK 352
            + ++E LKP +DRK+GKR                                AFFVFLE+FRK FK ENPNVKAVSAVGKAGGE+WKSL+                EYEK+MNAYN K
Sbjct:   12 RDTKEALKPAEDRKIGKRKAAVKAEKSSKRATTKDKKAKKDPNKPKRPPSAFFVFLEEFRKVFKKENPNVKAVSAVGKAGGERWKSLSEAEKAPYEAKAAKKKAEYEKIMNAYNKK 127

[Close]

BLAST of Pisum_sativum_v1_Contig2355 vs. TrEMBL
Match: B9SLN3_RICCO (DNA-binding protein MNB1B, putative OS=Ricinus communis GN=RCOM_0593200 PE=4 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 2.272e-17
Identity = 54/116 (46.55%), Postives = 62/116 (53.45%), Query Frame = 2

Query:   11 KTSREVLKPVDDRKVGKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--AFFVFLEDFRKTFKAENPNVKAVSAVGKAGGEKWKSLTXXXXXXXXXXXXXXXVEYEKLMNAYNNK 352
            K  +EVLKPV+DRK+GKR                                AFFVFLEDFRK +K E+PNVKAVSAVGKAGGEKWKS++                +YEKLM AYN K
Sbjct:   12 KDRKEVLKPVEDRKLGKRSAALKPNKNSKKVTKKDKPAKKDPNRPKRPPSAFFVFLEDFRKVYKQEHPNVKAVSAVGKAGGEKWKSMSNAEKSPFEAKAAKRKSDYEKLMTAYNKK 127

[Close]

BLAST of Pisum_sativum_v1_Contig2355 vs. TrEMBL
Match: B9HSP8_POPTR (High mobility group family OS=Populus trichocarpa GN=HMGB910 PE=4 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 6.609e-17
Identity = 55/120 (45.83%), Postives = 64/120 (53.33%), Query Frame = 2

Query:    2 GTGKTSR-EVLKPVDDRKVGKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--AFFVFLEDFRKTFKAENPNVKAVSAVGKAGGEKWKSLTXXXXXXXXXXXXXXXVEYEKLMNAYNNK 352
            GT +T + EVL PV+DRK+GKR                                AFFVFLE+FRK +K E+PNVKAVSAVGKAGGEKWKSL+                +YEKLM AYN K
Sbjct:    8 GTARTEKKEVLLPVEDRKIGKRKAALKANESSKKRVKKEKITKKDPNKPKRPPSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLSAAEKAPYEAKAAKRKSDYEKLMTAYNKK 127

[Close]

BLAST of Pisum_sativum_v1_Contig2355 vs. TrEMBL
Match: B9SQ35_RICCO (DNA-binding protein MNB1B, putative OS=Ricinus communis GN=RCOM_0644150 PE=4 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 8.632e-17
Identity = 53/119 (44.54%), Postives = 61/119 (51.26%), Query Frame = 2

Query:    2 GTGKTSREVLKPVDDRKVGKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--AFFVFLEDFRKTFKAENPNVKAVSAVGKAGGEKWKSLTXXXXXXXXXXXXXXXVEYEKLMNAYNNK 352
            G  K S++ LKP DDRKVGKR                                AFFVFLE+FRKTFK ENP+V +V+AVGKAGG KWKS++                EY KLMNAYN K
Sbjct:    8 GAAKASKDALKPADDRKVGKRKAAAAVDRSSKLKAKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPSVTSVAAVGKAGGAKWKSMSSAEKAPYEAKAAKKKDEYGKLMNAYNKK 126

[Close]

BLAST of Pisum_sativum_v1_Contig2355 vs. TAIR peptide
Match: AT3G51880.4 (| Symbols: HMGB1 | high mobility group B1 | chr3:19247241-19248491 REVERSE LENGTH=161)

HSP 1 Score: 102.064 bits (253), Expect = 4.052e-22
Identity = 56/112 (50.00%), Postives = 62/112 (55.36%), Query Frame = 2

Query:   11 KTSREVLKPVDDRKVGKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFFVFLEDFRKTFKAENPNVKAVSAVGKAGGEKWKSLTXXXXXXXXXXXXXXXVEYEKLMNAYN 346
            KT++E LKPVDDRKVGKR                              AFFVFLEDFR TFK ENPNVKAVSAVGKAGG+KWKS++                EYEK M+AYN
Sbjct:   11 KTTKEALKPVDDRKVGKRKAPAEKPTKRETRKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAYN 122

[Close]

BLAST of Pisum_sativum_v1_Contig2355 vs. TAIR peptide
Match: AT3G51880.3 (| Symbols: HMGB1, NFD1 | high mobility group B1 | chr3:19247241-19248491 REVERSE LENGTH=178)

HSP 1 Score: 102.064 bits (253), Expect = 4.052e-22
Identity = 56/112 (50.00%), Postives = 62/112 (55.36%), Query Frame = 2

Query:   11 KTSREVLKPVDDRKVGKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFFVFLEDFRKTFKAENPNVKAVSAVGKAGGEKWKSLTXXXXXXXXXXXXXXXVEYEKLMNAYN 346
            KT++E LKPVDDRKVGKR                              AFFVFLEDFR TFK ENPNVKAVSAVGKAGG+KWKS++                EYEK M+AYN
Sbjct:   11 KTTKEALKPVDDRKVGKRKAPAEKPTKRETRKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAYN 122

[Close]

BLAST of Pisum_sativum_v1_Contig2355 vs. TAIR peptide
Match: AT3G51880.2 (| Symbols: HMGB1, NFD1 | high mobility group B1 | chr3:19247241-19248491 REVERSE LENGTH=185)

HSP 1 Score: 102.064 bits (253), Expect = 4.052e-22
Identity = 56/112 (50.00%), Postives = 62/112 (55.36%), Query Frame = 2

Query:   11 KTSREVLKPVDDRKVGKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFFVFLEDFRKTFKAENPNVKAVSAVGKAGGEKWKSLTXXXXXXXXXXXXXXXVEYEKLMNAYN 346
            KT++E LKPVDDRKVGKR                              AFFVFLEDFR TFK ENPNVKAVSAVGKAGG+KWKS++                EYEK M+AYN
Sbjct:   11 KTTKEALKPVDDRKVGKRKAPAEKPTKRETRKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAYN 122

[Close]

BLAST of Pisum_sativum_v1_Contig2355 vs. TAIR peptide
Match: AT3G51880.1 (| Symbols: HMGB1, NFD1 | high mobility group B1 | chr3:19247241-19248491 REVERSE LENGTH=178)

HSP 1 Score: 102.064 bits (253), Expect = 4.052e-22
Identity = 56/112 (50.00%), Postives = 62/112 (55.36%), Query Frame = 2

Query:   11 KTSREVLKPVDDRKVGKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFFVFLEDFRKTFKAENPNVKAVSAVGKAGGEKWKSLTXXXXXXXXXXXXXXXVEYEKLMNAYN 346
            KT++E LKPVDDRKVGKR                              AFFVFLEDFR TFK ENPNVKAVSAVGKAGG+KWKS++                EYEK M+AYN
Sbjct:   11 KTTKEALKPVDDRKVGKRKAPAEKPTKRETRKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAYN 122

[Close]

BLAST of Pisum_sativum_v1_Contig2355 vs. TAIR peptide
Match: AT1G20696.3 (| Symbols: HMGB3, NFD3, NFD03 | high mobility group B3 | chr1:7179825-7181170 FORWARD LENGTH=140)

HSP 1 Score: 76.2554 bits (186), Expect = 2.381e-14
Identity = 38/66 (57.58%), Postives = 44/66 (66.67%), Query Frame = 2

Query:  155 AFFVFLEDFRKTFKAENPNVKAVSAVGKAGGEKWKSLTXXXXXXXXXXXXXXXVEYEKLMNAYNNK 352
            AFFVF+EDFR T+K E+P  K+V+AVGKAGGEKWKSL+               VEYEK M AYN K
Sbjct:   41 AFFVFMEDFRVTYKEEHPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKK 106

[Close]

BLAST of Pisum_sativum_v1_Contig2355 vs. TAIR peptide
Match: AT1G20696.2 (| Symbols: HMGB3, NFD3, NFD03 | high mobility group B3 | chr1:7179825-7181193 FORWARD LENGTH=147)

HSP 1 Score: 76.2554 bits (186), Expect = 2.381e-14
Identity = 38/66 (57.58%), Postives = 44/66 (66.67%), Query Frame = 2

Query:  155 AFFVFLEDFRKTFKAENPNVKAVSAVGKAGGEKWKSLTXXXXXXXXXXXXXXXVEYEKLMNAYNNK 352
            AFFVF+EDFR T+K E+P  K+V+AVGKAGGEKWKSL+               VEYEK M AYN K
Sbjct:   41 AFFVFMEDFRVTYKEEHPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKK 106

[Close]

BLAST of Pisum_sativum_v1_Contig2355 vs. TAIR peptide
Match: AT1G20696.1 (| Symbols: HMGB3, NFD3, NFD03 | high mobility group B3 | chr1:7179825-7181174 FORWARD LENGTH=141)

HSP 1 Score: 76.2554 bits (186), Expect = 2.381e-14
Identity = 38/66 (57.58%), Postives = 44/66 (66.67%), Query Frame = 2

Query:  155 AFFVFLEDFRKTFKAENPNVKAVSAVGKAGGEKWKSLTXXXXXXXXXXXXXXXVEYEKLMNAYNNK 352
            AFFVF+EDFR T+K E+P  K+V+AVGKAGGEKWKSL+               VEYEK M AYN K
Sbjct:   41 AFFVFMEDFRVTYKEEHPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKK 106

[Close]

BLAST of Pisum_sativum_v1_Contig2355 vs. TAIR peptide
Match: AT1G20693.3 (| Symbols: HMGB2, HMG BETA 1, NFD2, NFD02 | high mobility group B2 | chr1:7177282-7178487 FORWARD LENGTH=143)

HSP 1 Score: 73.9442 bits (180), Expect = 1.182e-13
Identity = 36/66 (54.55%), Postives = 43/66 (65.15%), Query Frame = 2

Query:  155 AFFVFLEDFRKTFKAENPNVKAVSAVGKAGGEKWKSLTXXXXXXXXXXXXXXXVEYEKLMNAYNNK 352
            AFFVF+EDFR+TFK ENP  K+V+ VGKA G+KWKSL+               VEYEK + AYN K
Sbjct:   44 AFFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKK 109

[Close]

BLAST of Pisum_sativum_v1_Contig2355 vs. TAIR peptide
Match: AT1G20693.2 (| Symbols: HMGB2, HMG BETA 1, NFD2, NFD02 | high mobility group B2 | chr1:7177282-7178487 FORWARD LENGTH=142)

HSP 1 Score: 73.9442 bits (180), Expect = 1.182e-13
Identity = 36/66 (54.55%), Postives = 43/66 (65.15%), Query Frame = 2

Query:  155 AFFVFLEDFRKTFKAENPNVKAVSAVGKAGGEKWKSLTXXXXXXXXXXXXXXXVEYEKLMNAYNNK 352
            AFFVF+EDFR+TFK ENP  K+V+ VGKA G+KWKSL+               VEYEK + AYN K
Sbjct:   44 AFFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKK 109

[Close]

BLAST of Pisum_sativum_v1_Contig2355 vs. TAIR peptide
Match: AT1G20693.1 (| Symbols: HMGB2, HMG BETA 1, NFD2, NFD02 | high mobility group B2 | chr1:7177282-7178487 FORWARD LENGTH=144)

HSP 1 Score: 73.9442 bits (180), Expect = 1.182e-13
Identity = 36/66 (54.55%), Postives = 43/66 (65.15%), Query Frame = 2

Query:  155 AFFVFLEDFRKTFKAENPNVKAVSAVGKAGGEKWKSLTXXXXXXXXXXXXXXXVEYEKLMNAYNNK 352
            AFFVF+EDFR+TFK ENP  K+V+ VGKA G+KWKSL+               VEYEK + AYN K
Sbjct:   44 AFFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKK 109

The following BLAST results are available for this feature:

BLAST of Pisum_sativum_v1_Contig2355 vs. SwissProt
BLAST of Pisum_sativum_v1_Contig2355 vs. TrEMBL
BLAST of Pisum_sativum_v1_Contig2355 vs. TAIR peptide

BLAST of Pisum_sativum_v1_Contig2355 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Swissprot)
Total hits: 5


Match Name	E-value	Identity	Description
HMGL_IPONI	7.086e-13	52.94	HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1	[more]
HMGL_SOYBN	5.999e-12	52.94	HMG1/2-like protein OS=Glycine max PE=2 SV=1	[more]
MNB1B_MAIZE	4.299e-10	48.44	DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=...	[more]
HMGL_VICFA	2.133e-9	46.97	HMG1/2-like protein OS=Vicia faba PE=2 SV=1	[more]
HMGL_WHEAT	1.059e-8	46.88	HMG1/2-like protein OS=Triticum aestivum PE=2 SV=1	[more]

BLAST of Pisum_sativum_v1_Contig2355 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
C6SVP1_SOYBN	2.593e-21	49.58	Putative uncharacterized protein OS=Glycine max PE...	[more]
Q3EAL6_ARATH	6.387e-20	50.00	AT3G51880 protein OS=Arabidopsis thaliana GN=AT3G5...	[more]
O49595_ARATH	6.387e-20	50.00	At3g51880/ORF13 OS=Arabidopsis thaliana GN=HMGalph...	[more]
D7LTZ6_ARALY	6.387e-20	50.00	Putative uncharacterized protein OS=Arabidopsis ly...	[more]
Q1EMR5_PLAMJ	1.089e-19	51.79	HMG-protein (Fragment) OS=Plantago major GN=hmg1 P...	[more]
C6SXC8_SOYBN	2.427e-19	47.90	Putative uncharacterized protein OS=Glycine max PE...	[more]
A5BH86_VITVI	5.978e-18	45.69	Putative uncharacterized protein OS=Vitis vinifera...	[more]
B9SLN3_RICCO	2.272e-17	46.55	DNA-binding protein MNB1B, putative OS=Ricinus com...	[more]
B9HSP8_POPTR	6.609e-17	45.83	High mobility group family OS=Populus trichocarpa ...	[more]
B9SQ35_RICCO	8.632e-17	44.54	DNA-binding protein MNB1B, putative OS=Ricinus com...	[more]

BLAST of Pisum_sativum_v1_Contig2355 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide)
Total hits: 10


Match Name	E-value	Identity	Description
AT3G51880.4	4.052e-22	50.00	\| Symbols: HMGB1 \| high mobility group B1 \| chr3:1...	[more]
AT3G51880.3	4.052e-22	50.00	\| Symbols: HMGB1, NFD1 \| high mobility group B1 \| ...	[more]
AT3G51880.2	4.052e-22	50.00	\| Symbols: HMGB1, NFD1 \| high mobility group B1 \| ...	[more]
AT3G51880.1	4.052e-22	50.00	\| Symbols: HMGB1, NFD1 \| high mobility group B1 \| ...	[more]
AT1G20696.3	2.381e-14	57.58	\| Symbols: HMGB3, NFD3, NFD03 \| high mobility grou...	[more]
AT1G20696.2	2.381e-14	57.58	\| Symbols: HMGB3, NFD3, NFD03 \| high mobility grou...	[more]
AT1G20696.1	2.381e-14	57.58	\| Symbols: HMGB3, NFD3, NFD03 \| high mobility grou...	[more]
AT1G20693.3	1.182e-13	54.55	\| Symbols: HMGB2, HMG BETA 1, NFD2, NFD02 \| high m...	[more]
AT1G20693.2	1.182e-13	54.55	\| Symbols: HMGB2, HMG BETA 1, NFD2, NFD02 \| high m...	[more]
AT1G20693.1	1.182e-13	54.55	\| Symbols: HMGB2, HMG BETA 1, NFD2, NFD02 \| high m...	[more]

InterPro

Analysis Name: InterProScan analysis for Pisum sativum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000910	High mobility group, HMG1/HMG2	GENE3D	1.10.30.10	no description	coord: 45..114 score: 9
IPR000910	High mobility group, HMG1/HMG2	PFAM	PF00505	HMG_box	coord: 46..115 score: 1
IPR000910	High mobility group, HMG1/HMG2	SMART	SM00398	no description	coord: 45..116 score: 6.7
IPR000910	High mobility group, HMG1/HMG2	PROFILE	PS50118	HMG_BOX_2	coord: 46..115 score: 19
IPR009071	High mobility group, superfamily	SUPERFAMILY	47095	HMG-box	coord: 26..119 score: 3.9
None	No IPR available	PANTHER	PTHR13711	SWI/SNF-RELATED CHROMATIN BINDING PROTEIN	coord: 42..166 score: 1.2
None	No IPR available	SEG	seg	seg	coord: 22..51 score: NAcoord: 90..104 score: NAcoord: 120..139 score: NAcoord: 145..166 score
None	No IPR available	SEG	seg	seg	coord: 10..23 score: NAcoord: 31..47 score
None	No IPR available	SEG	seg	seg	coord: 34..54 score
None	No IPR available	SEG	seg	seg	coord: 40..91 score
None	No IPR available	SEG	seg	seg	coord: 62..88 score
None	No IPR available	SEG	seg	seg	coord: 17..41 score
None	No IPR available	SEG	seg	seg	coord: 80..96 score
IPR001289	CCAAT-binding transcription factor, subunit B	PROFILE	PS51152	NFYA_HAP2_2	coord: 1..52 score: 9

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>Pisum_sativum_v1_Contig2355 ID=Pisum_sativum_v1_Contig2355; Name=Pisum_sativum_v1_Contig2355; organism=Pisum sativum; type=contig; length=827bp
GGGTACAGGAAAGACTTCAAGGGAAGTACTGAAACCAGTTGATGACCGAA
AAGTAGGAAAGCGAAAGGCTGTTTCTAAACCCGAGAAGAGTGCACCGAAG
CCTAAGAAGGAGAAAGCTAAGAAAGATCCCAACAAACCAAAAAGGCCTCC
CAGCGCTTTCTTCGTCTTCCTTGAGGATTTCAGAAAGACTTTTAAGGCAG
AAAATCCTAATGTGAAGGCTGTATCGGCTGTTGGGAAGGCTGGAGGAGAG
AAATGGAAATCCTTGACTAAGGCTGAAAAAGCTCCATATGAAGCCAAGGC
TGCAAAAAGGAAAGTTGAATATGAAAAACTTATGAACGCTTATAATAACA
AAGCGGCAAGTTCAGTCGAGGATGATGAGGAGGAATCAGACAAGTCCAAA
TCTGAAGTTAATAACGAAGATGAAGCAAGTGGAGAGGATGACCACCAAGA
TGACGATGATGAAGACGACGAGGACGAAGATGACGAGGAAGACGATGATT
GAAATCGGTGTGCATAACTTGAAATATGATGTTTCATTGATGGAGGGATG
CTGTTATGTATTTCGTAGTAGGTTACTTTTGGATATCTGTGTTGGTTGAA
ATATCTGTTGTCTTGTTACTCTGCCGGTATGATATTTTGCCGGCTCTACT
CGAGCTTCCCTCAATTGTTGTTAGTTATTGTACTTAAATTCTCCTTTGTG
CATTGTGCCTCAAATGTGTAGGCTTAAGTATTACTATAAATGTCATTTTG
ATCAATGCTTTACTATGTGTGTACTCAACAAAATCAAAACCAAAATACCA
AAATGCAATGTTACTGCTTCAATGAAT

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0003700	DNA-binding transcription factor activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **INTERPRO**
Term	Definition
IPR000910	High mobility group, HMG1/HMG2
IPR009071	HMG_box_dom
IPR001289	NFYA

Search form

Pisum_sativum_v1_Contig2355