Pisum_sativum_v1_Contig2396

Contig Overview
NamePisum_sativum_v1_Contig2396
Unique NamePisum_sativum_v1_Contig2396
Typecontig
OrganismPisum sativum (pea)
Sequence length378
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
GH720427ESTGH720427:30..244 +
EX569858ESTEX569858:1..378 +
FG534197ESTFG534197:6..370 +
Unigenes
This contig is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Pisum sativum unigene v1Pisum sativum unigene v1contig
Analyses
This contig is derived from or has results from the following analyses
Analysis NameDate Performed
Pisum sativum unigene v12010-12-27
Homology Analysis: Pisum sativum unigene v1 vs Trembl2010-12-28
Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide2011-02-03
InterProScan analysis for Pisum sativum unigene v12010-12-29
Relationships

The following EST feature(s) are a part of this contig:

Feature NameUnique NameSpeciesType
GH720427GH720427Pisum sativumEST
EX569858EX569858Pisum sativumEST
FG534197FG534197Pisum sativumEST


Homology
[Close]
BLAST of Pisum_sativum_v1_Contig2396 vs. TrEMBL
Match: B9HSW7_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_565848 PE=4 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.369e-13
Identity = 33/57 (57.89%), Postives = 48/57 (84.21%), Query Frame = 1 
Query:   28 MDLFGEMEEQITTMAMDVDDVDNFEVLADGIVGNDSKVADSEFFNSFQDDFDDADIN 198
            +DLF +MEEQ +T+AMDVDDVD  E+  +G++  ++K+AD++FFN F+DDFDD+DIN
Sbjct:    6 VDLFADMEEQGSTVAMDVDDVDTLEMFGEGVINMENKLADADFFNYFEDDFDDSDIN 62
[Close]
BLAST of Pisum_sativum_v1_Contig2396 vs. TrEMBL
Match: A9PHA8_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_820831 PE=4 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.977e-12
Identity = 31/57 (54.39%), Postives = 46/57 (80.70%), Query Frame = 1 
Query:   28 MDLFGEMEEQITTMAMDVDDVDNFEVLADGIVGNDSKVADSEFFNSFQDDFDDADIN 198
            +D F +ME+Q +T+AMDVDDVD  E+  +G++  ++K+AD++FFN F+DDFDD DIN
Sbjct:    6 VDFFADMEDQGSTVAMDVDDVDALEMFGEGVINMENKLADADFFNYFEDDFDDTDIN 62
[Close]
BLAST of Pisum_sativum_v1_Contig2396 vs. TrEMBL
Match: D7LQ66_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_904509 PE=4 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.306e-11
Identity = 29/57 (50.88%), Postives = 46/57 (80.70%), Query Frame = 1 
Query:   28 MDLFGEMEEQITTMAMDVDDVDNFEVLADGIVGNDSKVADSEFFNSFQDDFDDADIN 198
            +D+  EM++  ++MAMDVDD++  E+ ++G   ++SK+AD++FFN F+DDFDDADIN
Sbjct:    6 LDMLSEMDDAGSSMAMDVDDLEAMEIFSEGGGASESKLADADFFNKFEDDFDDADIN 62
[Close]
BLAST of Pisum_sativum_v1_Contig2396 vs. TrEMBL
Match: Q9T0H2_ARATH (AT4g13520/T6G15_70 OS=Arabidopsis thaliana GN=AT4g13520 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.850e-10
Identity = 29/57 (50.88%), Postives = 45/57 (78.95%), Query Frame = 1 
Query:   28 MDLFGEMEEQITTMAMDVDDVDNFEVLADGIVGNDSKVADSEFFNSFQDDFDDADIN 198
            +D+  EM++  ++MAMDVDD++  E+L +G + +D+K+AD++FFN F DDFDD DIN
Sbjct:    6 LDMLSEMDDAGSSMAMDVDDLEAMEILNEGGLVSDNKLADADFFNKFDDDFDDTDIN 62
[Close]
BLAST of Pisum_sativum_v1_Contig2396 vs. TrEMBL
Match: D7MHF5_ARALY (Putative uncharacterized protein (Fragment) OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_493557 PE=4 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 7.774e-9
Identity = 26/53 (49.06%), Postives = 43/53 (81.13%), Query Frame = 1 
Query:   28 MDLFGEMEEQITTMAMDVDDVDNFEVLADGIVGNDSKVADSEFFNSFQDDFDD 186
            +D+  EM++  ++MAMDVDD++  E+L +G + +D+K+AD++FFN F+DDFDD
Sbjct:    3 LDMLSEMDDAGSSMAMDVDDLEAMEILNEGGLVSDNKLADADFFNKFEDDFDD 55
[Close]
BLAST of Pisum_sativum_v1_Contig2396 vs. TAIR peptide
Match: AT4G13520.1 (| Symbols: SMAP1 | small acidic protein 1 | chr4:7864462-7864650 FORWARD LENGTH=62)

HSP 1 Score: 68.9366 bits (167), Expect = 8.497e-13
Identity = 29/57 (50.88%), Postives = 45/57 (78.95%), Query Frame = 1 
Query:   28 MDLFGEMEEQITTMAMDVDDVDNFEVLADGIVGNDSKVADSEFFNSFQDDFDDADIN 198
            +D+  EM++  ++MAMDVDD++  E+L +G + +D+K+AD++FFN F DDFDD DIN
Sbjct:    6 LDMLSEMDDAGSSMAMDVDDLEAMEILNEGGLVSDNKLADADFFNKFDDDFDDTDIN 62
The following BLAST results are available for this feature:
BLAST of Pisum_sativum_v1_Contig2396 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl)
Total hits: 5
Match NameE-valueIdentityDescription
B9HSW7_POPTR1.369e-1357.89Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
A9PHA8_POPTR1.977e-1254.39Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
D7LQ66_ARALY8.306e-1150.88Putative uncharacterized protein OS=Arabidopsis ly... [more]
Q9T0H2_ARATH1.850e-1050.88AT4g13520/T6G15_70 OS=Arabidopsis thaliana GN=AT4g... [more]
D7MHF5_ARALY7.774e-949.06Putative uncharacterized protein (Fragment) OS=Ara... [more]
back to top
BLAST of Pisum_sativum_v1_Contig2396 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide)
Total hits: 1
Match NameE-valueIdentityDescription
AT4G13520.18.497e-1350.88| Symbols: SMAP1 | small acidic protein 1 | chr4:7... [more]
back to top
InterPro
Analysis Name: InterProScan analysis for Pisum sativum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 6..15
score
NoneNo IPR availableSEGsegsegcoord: 21..38
score
NoneNo IPR availableSEGsegsegcoord: 29..52
score

Sequences
The following sequences are available for this feature:

contig sequence

>Pisum_sativum_v1_Contig2396 ID=Pisum_sativum_v1_Contig2396; Name=Pisum_sativum_v1_Contig2396; organism=Pisum sativum; type=contig; length=378bp
CAAGCAAGAGAGACGATCATGAGAGCAATGGACTTGTTCGGAGAGATGGA
GGAGCAGATAACGACAATGGCGATGGACGTCGACGACGTCGACAATTTCG
AAGTCTTGGCCGATGGCATCGTCGGCAATGATTCCAAAGTCGCCGATTCC
GAATTCTTCAACTCCTTCCAAGACGATTTCGATGATGCTGATATCAACTA
ATACCTTTTCTTCTTATTGATTAGTACGTCGTTGTTTCCTGTTTTCATCT
TCATGACGGATAAGAAAAGAAAAAACTGATATTGCCGTACTTTGTTTCTT
GGATTTTTGTGTTAATATGATATGATGGTGATGACTATTTTGTGATGAAT
CAACTGAATTTCTGGTTTTGAAAAAAAG
back to top