Pisum_sativum_v1_Contig2407
Contig Overview
Alignments
The following features are aligned
Unigenes
This contig is part of the following unigenes:
Analyses
This contig is derived from or has results from the following analyses
Relationships
The following EST feature(s) are a part of this contig:
Homology
BLAST of Pisum_sativum_v1_Contig2407 vs. SwissProt
Match: POLG_PVCV2 (Genome polyprotein OS=Petunia vein clearing virus (isolate Hohn) PE=3 SV=1) HSP 1 Score: 60.077 bits (144), Expect = 4.287e-15 Identity = 39/107 (36.45%), Postives = 59/107 (55.14%), Query Frame = -1 Query: 465 VKKTNSLKIENLIEYSHVPEDAQISETMPPLLSPYNIFKRERSVT--RSI*NLISTNCPHKKEYAQSSRLD*CSLRAMNQE*YVDLEIP*YLIIHWKTEGYTALTLG 779 + K S K + L E + E+ +IS+T PLL+PY+ F + RSVT I +L+ + H KEY +S+LD + A +E +V L IP HWK+ +T + G Sbjct: 24 LSKALSNKYDYLYEVDILKENQKISDTYLPLLNPYSAFAK-RSVTPWSQIRSLVQSKPRHVKEYVAASKLDQHPVFATGEEQFVTLHIPEEFASHWKSHQFTHIHFG 129 HSP 2 Score: 42.3578 bits (98), Expect = 4.287e-15 Identity = 19/51 (37.25%), Postives = 33/51 (64.71%), Query Frame = -3 Query: 325 LNFGVVRLILSLNGRKNQSVFCKIALLDSSYLHYENDVIEIVLTTLHAEAI 477 ++FG V++ L+ +GRK Q V ++ALLD+ YL Y++ + TL+A + Sbjct: 126 IHFGAVKIALTYHGRKGQPVVARLALLDTRYLEYQHANLGTAEITLNAGTV 176
BLAST of Pisum_sativum_v1_Contig2407 vs. SwissProt
Match: POLG_PVCV1 (Genome polyprotein OS=Petunia vein clearing virus (isolate Shepherd) PE=3 SV=1) HSP 1 Score: 60.077 bits (144), Expect = 4.287e-15 Identity = 39/107 (36.45%), Postives = 59/107 (55.14%), Query Frame = -1 Query: 465 VKKTNSLKIENLIEYSHVPEDAQISETMPPLLSPYNIFKRERSVT--RSI*NLISTNCPHKKEYAQSSRLD*CSLRAMNQE*YVDLEIP*YLIIHWKTEGYTALTLG 779 + K S K + L E + E+ +IS+T PLL+PY+ F + RSVT I +L+ + H KEY +S+LD + A +E +V L IP HWK+ +T + G Sbjct: 23 LSKALSNKYDYLYEVDILKENQKISDTYLPLLNPYSAFAK-RSVTPWSQIRSLVQSKPRHVKEYVAASKLDQHPVFATGEEQFVTLHIPEEFASHWKSHQFTHIHFG 128 HSP 2 Score: 42.3578 bits (98), Expect = 4.287e-15 Identity = 19/51 (37.25%), Postives = 33/51 (64.71%), Query Frame = -3 Query: 325 LNFGVVRLILSLNGRKNQSVFCKIALLDSSYLHYENDVIEIVLTTLHAEAI 477 ++FG V++ L+ +GRK Q V ++ALLD+ YL Y++ + TL+A + Sbjct: 125 IHFGAVKIALTYHGRKGQPVVARLALLDTRYLEYQHANLGTAEITLNAGTV 175
BLAST of Pisum_sativum_v1_Contig2407 vs. TrEMBL
Match: B9H6I3_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_760488 PE=4 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 2.799e-16 Identity = 41/106 (38.68%), Postives = 61/106 (57.55%), Query Frame = -1 Query: 465 VKKTNSLKIENLIEYSHVPEDAQISETMPPLLSPYNIF-KRERSVTRSI*NLISTNCPHKKEYAQSSRLD*CSLRAMNQE*YVDLEIP*YLIIHWKTEGYTALTLG 779 ++++ S K++ L E S + + ISET PL++PY+ F KR SV RSI LI KEY Q+S D + A ++E +V LEIP + W ++GYT + G Sbjct: 29 IRQSTSTKLDYLYEVSLLNDTQNISETDLPLVNPYHAFAKRSPSVIRSIKTLIKQPSRVAKEYVQASSFDQHKIPATSREQFVTLEIPSEFLGQWISQGYTHIHFG 134 HSP 2 Score: 43.8986 bits (102), Expect = 2.799e-16 Identity = 20/52 (38.46%), Postives = 34/52 (65.38%), Query Frame = -3 Query: 322 LNFGVVRLILSLNGRKNQSVFCKIALLDSSYLHYENDVIEIVLTTLHAEAII 477 ++FG +RL LS +G+K V ++ALLD+ YL Y++ I + TTL+ ++ Sbjct: 131 IHFGAIRLALSYHGQKGLPVAARLALLDTRYLEYQHACIGSLETTLNCGTVV 182
BLAST of Pisum_sativum_v1_Contig2407 vs. TrEMBL
Match: B9GGY1_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_550332 PE=4 SV=1) HSP 1 Score: 58.5362 bits (140), Expect = 2.500e-14 Identity = 37/106 (34.91%), Postives = 60/106 (56.60%), Query Frame = -1 Query: 465 VKKTNSLKIENLIEYSHVPEDAQISETMPPLLSPYNIF-KRERSVTRSI*NLISTNCPHKKEYAQSSRLD*CSLRAMNQE*YVDLEIP*YLIIHWKTEGYTALTLG 779 ++++ S K++ L E S + + +ISET L++PY+ F K+ SV R+I LI KEY Q+S D + A+++E +V L IP W ++GYT + G Sbjct: 37 IRQSTSTKLDYLYEVSLLDDTQKISETDLSLVNPYHAFAKKSPSVIRNIKTLIKQPSRVAKEYVQASSFDQHKIPAISREQFVTLAIPSEFPGQWISQGYTHIHFG 142 HSP 2 Score: 45.4394 bits (106), Expect = 2.500e-14 Identity = 21/52 (40.38%), Postives = 34/52 (65.38%), Query Frame = -3 Query: 322 LNFGVVRLILSLNGRKNQSVFCKIALLDSSYLHYENDVIEIVLTTLHAEAII 477 ++FG +RL LS +GRK V ++ALLD+ YL Y++ I + TTL+ ++ Sbjct: 139 IHFGAIRLALSYHGRKGLPVAARLALLDTRYLEYQHACIGSLETTLNCGTVV 190
BLAST of Pisum_sativum_v1_Contig2407 vs. TrEMBL
Match: B9I1J5_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_568694 PE=4 SV=1) HSP 1 Score: 48.521 bits (114), Expect = 1.025e-10 Identity = 33/84 (39.29%), Postives = 46/84 (54.76%), Query Frame = -1 Query: 465 QISETMPPLLSPYNIF-KRERSVTRSI*NLISTNCPHKKEYAQSSRLD*CSLRAMNQE*YVDLEIP*YLIIHWKTEGYTALTLG 713 +ISET L++PY+ F K+ SV SI LI KEY Q+S D + A ++E +V LEIP W ++GYT + G Sbjct: 2 KISETDLSLVNPYHAFTKKSPSVICSIKTLIKQPSRVAKEYVQASSFDQHKIPATSKEQFVTLEIPTEFPGQWISQGYTHIYFG 85 HSP 2 Score: 43.1282 bits (100), Expect = 1.025e-10 Identity = 21/50 (42.00%), Postives = 31/50 (62.00%), Query Frame = -3 Query: 322 FGVVRLILSLNGRKNQSVFCKIALLDSSYLHYENDVIEIVLTTLHAEAII 471 FG +RL LS +GRK V ++ALLD+ YL Y++ I + TTL ++ Sbjct: 84 FGAIRLALSYHGRKGLPVAAQLALLDTRYLEYQHACIGSLKTTLDCGMVV 133
BLAST of Pisum_sativum_v1_Contig2407 vs. TrEMBL
Match: D7KK69_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_891051 PE=4 SV=1) HSP 1 Score: 45.8246 bits (107), Expect = 1.794e-10 Identity = 30/107 (28.04%), Postives = 53/107 (49.53%), Query Frame = -1 Query: 465 KKTNSLKIENLIEYSHVPEDAQISETMPPLLSPYNIFKRERSVTRSI*NLISTNCPHK---KEYAQSSRLD*CSLRAMNQE*YVDLEIP*YLIIHWKTEGYTALTLG 776 +K+N+ KI+NL E +V +++++ T LL+PY F + S + + PHK +E +S+L+ + E + L + +I W+ GYT L G Sbjct: 14 RKSNASKIDNLYEVEYVSDESKVPITQLSLLNPYKAFTKSNSTFPKVIKYVFG--PHKHAARELVLASQLEQHLVPTTETEQMIPLRLNEGMIHQWRAYGYTHLHYG 118 HSP 2 Score: 45.0542 bits (105), Expect = 1.794e-10 Identity = 20/51 (39.22%), Postives = 33/51 (64.71%), Query Frame = -3 Query: 325 LNFGVVRLILSLNGRKNQSVFCKIALLDSSYLHYENDVIEIVLTTLHAEAI 477 L++G +R+ L+L GRK + ++ALLD+ Y Y++ I + TTL+A I Sbjct: 115 LHYGAIRVALTLYGRKGLPIVVRVALLDTRYREYQHTYIATIQTTLNASTI 165
BLAST of Pisum_sativum_v1_Contig2407 vs. TrEMBL
Match: B9P804_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_595706 PE=4 SV=1) HSP 1 Score: 63.1586 bits (152), Expect = 3.574e-8 Identity = 43/113 (38.05%), Postives = 64/113 (56.64%), Query Frame = -1 Query: 459 VKKTNSLKIENLIEYSHVPEDAQISETMPPLLSPYNIF-KRERSVTRSI*NLISTNCPHKKEYAQSSRLD*CSLRAMNQE*YVDLEIP*YLIIHWKTEGYT-----ALTLGLS 779 ++++ S K++ L E S + + +ISET PL++PY+ F K+ SV RSI LI KEY Q+S D + A ++E +V LEIP W ++GYT A+ L LS Sbjct: 29 IRQSTSTKLDYLYEVSLLDDTQKISETDLPLVNPYHTFTKKSPSVIRSIKTLIKQPSRVAKEYVQASSFDQHKIPATSREHFVTLEIPTEFPGQWISQGYTHIHFCAIRLALS 141
BLAST of Pisum_sativum_v1_Contig2407 vs. TrEMBL
Match: B9I585_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_772390 PE=4 SV=1) HSP 1 Score: 61.6178 bits (148), Expect = 1.040e-7 Identity = 42/113 (37.17%), Postives = 63/113 (55.75%), Query Frame = -1 Query: 459 VKKTNSLKIENLIEYSHVPEDAQISETMPPLLSPYNIF-KRERSVTRSI*NLISTNCPHKKEYAQSSRLD*CSLRAMNQE*YVDLEIP*YLIIHWKTEGYT-----ALTLGLS 779 ++++ S K++ E S + + +ISET PL++PY+ F K+ SV RSI LI KEY Q+S D + A ++E +V LEIP W ++GYT A+ L LS Sbjct: 29 IRQSTSTKLDYFYEVSLLDDTQKISETDLPLVNPYHAFTKKSPSVIRSIKTLIKQPSRVAKEYVQASSFDQHKIPATSREQFVTLEIPTEFPGQWISQGYTHIHFCAIRLALS 141 The following BLAST results are available for this feature:
BLAST of Pisum_sativum_v1_Contig2407 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Swissprot) Total hits: 2
BLAST of Pisum_sativum_v1_Contig2407 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl) Total hits: 6
Sequences
The
following sequences are available for this feature:
contig sequence >Pisum_sativum_v1_Contig2407 ID=Pisum_sativum_v1_Contig2407; Name=Pisum_sativum_v1_Contig2407; organism=Pisum sativum; type=contig; length=869bpback to top |