Pisum_sativum_v1_Contig2407

Contig Overview
NamePisum_sativum_v1_Contig2407
Unique NamePisum_sativum_v1_Contig2407
Typecontig
OrganismPisum sativum (pea)
Sequence length869
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
EX570773ESTEX570773:239..718 +Pisum sativum unigene v1n/a
EX570775ESTEX570775:235..666 +Pisum sativum unigene v1n/a
EX570772ESTEX570772:239..718 +Pisum sativum unigene v1n/a
EX570777ESTEX570777:100..666 +Pisum sativum unigene v1n/a
EX570774ESTEX570774:248..665 +Pisum sativum unigene v1n/a
FG528959ESTFG528959:238..758 +Pisum sativum unigene v1n/a
FG533170ESTFG533170:93..777 +Pisum sativum unigene v1n/a
EX570778ESTEX570778:1..852 +Pisum sativum unigene v1n/a
FG530478ESTFG530478:239..869 +Pisum sativum unigene v1n/a
EX571259ESTEX571259:252..854 +Pisum sativum unigene v1n/a
Unigenes
This contig is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Pisum sativum unigene v1Pisum sativum unigene v1contig
Analyses
This contig is derived from or has results from the following analyses
Analysis NameDate Performed
Pisum sativum unigene v12010-12-27
Homology Analysis: Pisum sativum unigene v1 vs Trembl2010-12-28
Homology Analysis: Pisum sativum unigene v1 vs Swissprot2010-12-28
Relationships

The following EST feature(s) are a part of this contig:

Feature NameUnique NameSpeciesType
EX570773EX570773Pisum sativumEST
EX570775EX570775Pisum sativumEST
EX570772EX570772Pisum sativumEST
EX570777EX570777Pisum sativumEST
EX570774EX570774Pisum sativumEST
FG528959FG528959Pisum sativumEST
FG533170FG533170Pisum sativumEST
EX570778EX570778Pisum sativumEST
FG530478FG530478Pisum sativumEST
EX571259EX571259Pisum sativumEST


Homology
BLAST of Pisum_sativum_v1_Contig2407 vs. SwissProt
Match: POLG_PVCV2 (Genome polyprotein OS=Petunia vein clearing virus (isolate Hohn) PE=3 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 4.287e-15
Identity = 39/107 (36.45%), Postives = 59/107 (55.14%), Query Frame = -1
Query:  465 VKKTNSLKIENLIEYSHVPEDAQISETMPPLLSPYNIFKRERSVT--RSI*NLISTNCPHKKEYAQSSRLD*CSLRAMNQE*YVDLEIP*YLIIHWKTEGYTALTLG 779
            + K  S K + L E   + E+ +IS+T  PLL+PY+ F + RSVT    I +L+ +   H KEY  +S+LD   + A  +E +V L IP     HWK+  +T +  G
Sbjct:   24 LSKALSNKYDYLYEVDILKENQKISDTYLPLLNPYSAFAK-RSVTPWSQIRSLVQSKPRHVKEYVAASKLDQHPVFATGEEQFVTLHIPEEFASHWKSHQFTHIHFG 129          

HSP 2 Score: 42.3578 bits (98), Expect = 4.287e-15
Identity = 19/51 (37.25%), Postives = 33/51 (64.71%), Query Frame = -3
Query:  325 LNFGVVRLILSLNGRKNQSVFCKIALLDSSYLHYENDVIEIVLTTLHAEAI 477
            ++FG V++ L+ +GRK Q V  ++ALLD+ YL Y++  +     TL+A  +
Sbjct:  126 IHFGAVKIALTYHGRKGQPVVARLALLDTRYLEYQHANLGTAEITLNAGTV 176          
BLAST of Pisum_sativum_v1_Contig2407 vs. SwissProt
Match: POLG_PVCV1 (Genome polyprotein OS=Petunia vein clearing virus (isolate Shepherd) PE=3 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 4.287e-15
Identity = 39/107 (36.45%), Postives = 59/107 (55.14%), Query Frame = -1
Query:  465 VKKTNSLKIENLIEYSHVPEDAQISETMPPLLSPYNIFKRERSVT--RSI*NLISTNCPHKKEYAQSSRLD*CSLRAMNQE*YVDLEIP*YLIIHWKTEGYTALTLG 779
            + K  S K + L E   + E+ +IS+T  PLL+PY+ F + RSVT    I +L+ +   H KEY  +S+LD   + A  +E +V L IP     HWK+  +T +  G
Sbjct:   23 LSKALSNKYDYLYEVDILKENQKISDTYLPLLNPYSAFAK-RSVTPWSQIRSLVQSKPRHVKEYVAASKLDQHPVFATGEEQFVTLHIPEEFASHWKSHQFTHIHFG 128          

HSP 2 Score: 42.3578 bits (98), Expect = 4.287e-15
Identity = 19/51 (37.25%), Postives = 33/51 (64.71%), Query Frame = -3
Query:  325 LNFGVVRLILSLNGRKNQSVFCKIALLDSSYLHYENDVIEIVLTTLHAEAI 477
            ++FG V++ L+ +GRK Q V  ++ALLD+ YL Y++  +     TL+A  +
Sbjct:  125 IHFGAVKIALTYHGRKGQPVVARLALLDTRYLEYQHANLGTAEITLNAGTV 175          
BLAST of Pisum_sativum_v1_Contig2407 vs. TrEMBL
Match: B9H6I3_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_760488 PE=4 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 2.799e-16
Identity = 41/106 (38.68%), Postives = 61/106 (57.55%), Query Frame = -1
Query:  465 VKKTNSLKIENLIEYSHVPEDAQISETMPPLLSPYNIF-KRERSVTRSI*NLISTNCPHKKEYAQSSRLD*CSLRAMNQE*YVDLEIP*YLIIHWKTEGYTALTLG 779
            ++++ S K++ L E S + +   ISET  PL++PY+ F KR  SV RSI  LI       KEY Q+S  D   + A ++E +V LEIP   +  W ++GYT +  G
Sbjct:   29 IRQSTSTKLDYLYEVSLLNDTQNISETDLPLVNPYHAFAKRSPSVIRSIKTLIKQPSRVAKEYVQASSFDQHKIPATSREQFVTLEIPSEFLGQWISQGYTHIHFG 134          

HSP 2 Score: 43.8986 bits (102), Expect = 2.799e-16
Identity = 20/52 (38.46%), Postives = 34/52 (65.38%), Query Frame = -3
Query:  322 LNFGVVRLILSLNGRKNQSVFCKIALLDSSYLHYENDVIEIVLTTLHAEAII 477
            ++FG +RL LS +G+K   V  ++ALLD+ YL Y++  I  + TTL+   ++
Sbjct:  131 IHFGAIRLALSYHGQKGLPVAARLALLDTRYLEYQHACIGSLETTLNCGTVV 182          
BLAST of Pisum_sativum_v1_Contig2407 vs. TrEMBL
Match: B9GGY1_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_550332 PE=4 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 2.500e-14
Identity = 37/106 (34.91%), Postives = 60/106 (56.60%), Query Frame = -1
Query:  465 VKKTNSLKIENLIEYSHVPEDAQISETMPPLLSPYNIF-KRERSVTRSI*NLISTNCPHKKEYAQSSRLD*CSLRAMNQE*YVDLEIP*YLIIHWKTEGYTALTLG 779
            ++++ S K++ L E S + +  +ISET   L++PY+ F K+  SV R+I  LI       KEY Q+S  D   + A+++E +V L IP      W ++GYT +  G
Sbjct:   37 IRQSTSTKLDYLYEVSLLDDTQKISETDLSLVNPYHAFAKKSPSVIRNIKTLIKQPSRVAKEYVQASSFDQHKIPAISREQFVTLAIPSEFPGQWISQGYTHIHFG 142          

HSP 2 Score: 45.4394 bits (106), Expect = 2.500e-14
Identity = 21/52 (40.38%), Postives = 34/52 (65.38%), Query Frame = -3
Query:  322 LNFGVVRLILSLNGRKNQSVFCKIALLDSSYLHYENDVIEIVLTTLHAEAII 477
            ++FG +RL LS +GRK   V  ++ALLD+ YL Y++  I  + TTL+   ++
Sbjct:  139 IHFGAIRLALSYHGRKGLPVAARLALLDTRYLEYQHACIGSLETTLNCGTVV 190          
BLAST of Pisum_sativum_v1_Contig2407 vs. TrEMBL
Match: B9I1J5_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_568694 PE=4 SV=1)

HSP 1 Score: 48.521 bits (114), Expect = 1.025e-10
Identity = 33/84 (39.29%), Postives = 46/84 (54.76%), Query Frame = -1
Query:  465 QISETMPPLLSPYNIF-KRERSVTRSI*NLISTNCPHKKEYAQSSRLD*CSLRAMNQE*YVDLEIP*YLIIHWKTEGYTALTLG 713
            +ISET   L++PY+ F K+  SV  SI  LI       KEY Q+S  D   + A ++E +V LEIP      W ++GYT +  G
Sbjct:    2 KISETDLSLVNPYHAFTKKSPSVICSIKTLIKQPSRVAKEYVQASSFDQHKIPATSKEQFVTLEIPTEFPGQWISQGYTHIYFG 85          

HSP 2 Score: 43.1282 bits (100), Expect = 1.025e-10
Identity = 21/50 (42.00%), Postives = 31/50 (62.00%), Query Frame = -3
Query:  322 FGVVRLILSLNGRKNQSVFCKIALLDSSYLHYENDVIEIVLTTLHAEAII 471
            FG +RL LS +GRK   V  ++ALLD+ YL Y++  I  + TTL    ++
Sbjct:   84 FGAIRLALSYHGRKGLPVAAQLALLDTRYLEYQHACIGSLKTTLDCGMVV 133          
BLAST of Pisum_sativum_v1_Contig2407 vs. TrEMBL
Match: D7KK69_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_891051 PE=4 SV=1)

HSP 1 Score: 45.8246 bits (107), Expect = 1.794e-10
Identity = 30/107 (28.04%), Postives = 53/107 (49.53%), Query Frame = -1
Query:  465 KKTNSLKIENLIEYSHVPEDAQISETMPPLLSPYNIFKRERSVTRSI*NLISTNCPHK---KEYAQSSRLD*CSLRAMNQE*YVDLEIP*YLIIHWKTEGYTALTLG 776
            +K+N+ KI+NL E  +V +++++  T   LL+PY  F +  S    +   +    PHK   +E   +S+L+   +     E  + L +   +I  W+  GYT L  G
Sbjct:   14 RKSNASKIDNLYEVEYVSDESKVPITQLSLLNPYKAFTKSNSTFPKVIKYVFG--PHKHAARELVLASQLEQHLVPTTETEQMIPLRLNEGMIHQWRAYGYTHLHYG 118          

HSP 2 Score: 45.0542 bits (105), Expect = 1.794e-10
Identity = 20/51 (39.22%), Postives = 33/51 (64.71%), Query Frame = -3
Query:  325 LNFGVVRLILSLNGRKNQSVFCKIALLDSSYLHYENDVIEIVLTTLHAEAI 477
            L++G +R+ L+L GRK   +  ++ALLD+ Y  Y++  I  + TTL+A  I
Sbjct:  115 LHYGAIRVALTLYGRKGLPIVVRVALLDTRYREYQHTYIATIQTTLNASTI 165          
BLAST of Pisum_sativum_v1_Contig2407 vs. TrEMBL
Match: B9P804_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_595706 PE=4 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 3.574e-8
Identity = 43/113 (38.05%), Postives = 64/113 (56.64%), Query Frame = -1
Query:  459 VKKTNSLKIENLIEYSHVPEDAQISETMPPLLSPYNIF-KRERSVTRSI*NLISTNCPHKKEYAQSSRLD*CSLRAMNQE*YVDLEIP*YLIIHWKTEGYT-----ALTLGLS 779
            ++++ S K++ L E S + +  +ISET  PL++PY+ F K+  SV RSI  LI       KEY Q+S  D   + A ++E +V LEIP      W ++GYT     A+ L LS
Sbjct:   29 IRQSTSTKLDYLYEVSLLDDTQKISETDLPLVNPYHTFTKKSPSVIRSIKTLIKQPSRVAKEYVQASSFDQHKIPATSREHFVTLEIPTEFPGQWISQGYTHIHFCAIRLALS 141          
BLAST of Pisum_sativum_v1_Contig2407 vs. TrEMBL
Match: B9I585_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_772390 PE=4 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 1.040e-7
Identity = 42/113 (37.17%), Postives = 63/113 (55.75%), Query Frame = -1
Query:  459 VKKTNSLKIENLIEYSHVPEDAQISETMPPLLSPYNIF-KRERSVTRSI*NLISTNCPHKKEYAQSSRLD*CSLRAMNQE*YVDLEIP*YLIIHWKTEGYT-----ALTLGLS 779
            ++++ S K++   E S + +  +ISET  PL++PY+ F K+  SV RSI  LI       KEY Q+S  D   + A ++E +V LEIP      W ++GYT     A+ L LS
Sbjct:   29 IRQSTSTKLDYFYEVSLLDDTQKISETDLPLVNPYHAFTKKSPSVIRSIKTLIKQPSRVAKEYVQASSFDQHKIPATSREQFVTLEIPTEFPGQWISQGYTHIHFCAIRLALS 141          
The following BLAST results are available for this feature:
BLAST of Pisum_sativum_v1_Contig2407 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Swissprot)
Total hits: 2
Match NameE-valueIdentityDescription
POLG_PVCV24.287e-1536.45Genome polyprotein OS=Petunia vein clearing virus ... [more]
POLG_PVCV14.287e-1536.45Genome polyprotein OS=Petunia vein clearing virus ... [more]
back to top
BLAST of Pisum_sativum_v1_Contig2407 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl)
Total hits: 6
Match NameE-valueIdentityDescription
B9H6I3_POPTR2.799e-1638.68Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
B9GGY1_POPTR2.500e-1434.91Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
B9I1J5_POPTR1.025e-1039.29Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
D7KK69_ARALY1.794e-1028.04Putative uncharacterized protein OS=Arabidopsis ly... [more]
B9P804_POPTR3.574e-838.05Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
B9I585_POPTR1.040e-737.17Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
back to top
Sequences
The following sequences are available for this feature:

contig sequence

>Pisum_sativum_v1_Contig2407 ID=Pisum_sativum_v1_Contig2407; Name=Pisum_sativum_v1_Contig2407; organism=Pisum sativum; type=contig; length=869bp
TCTGAAATTACATTCTGAAACTGAATACCATTGTGAGATCTCCTAAATCA
GACTGAAAACTTCAAATCAGAGCAATAGGTAGGAAGAACCCTAAGTCAAA
ATTCTAAAATTAAATCACATATGCTGGGAATCAAAGCCCCCGAGGTTAGG
GCTTTGATTCCCCTAACCTCAAGCTACAATGTTGTAACGAGAATTGAAGG
AATCGATGCAAGCAGTAGAGAACTCACTGGTGGAGCAAGCGCAGTTGTCA
CCGGAATTTCAGGTGGATTTCAATTGGTTGATTGATCATGGAGCTTATGG
AATATGCAGGCTATCATGTGGAATGATAGCTTCGGCATGAAGTGTGGTTA
GAACAATTTCTATCACATCGTTTTCATAATGGAGGTAGCTTGAGTCCAGT
AGAGCTATTTTGCAAAAGACAGATTGGTTCTTCCTTCCATTAAGAGAAAG
TATGAGCCTGACAACCCCAAAGTTAAGGCTGTATATCCTTCAGTCTTCCA
GTGAATTATAAGATACTAGGGAATTTCCAGATCTACGTACTACTCTTGGT
TCATGGCTCTTAAACTACATTAGTCTAGTCTAGACGATTGGGCATATTCT
TTCTTATGAGGGCAGTTTGTAGATATAAGATTTCAGATGGATCTGGTAAC
ACTTCTTTCTCTTTTGAAGATGTTGTACGGACTTAATAGAGGAGGCATTG
TTTCGGAAATTTGAGCATCTTCTGGAACATGAGAATACTCAATAAGGTTT
TCTATTTTAAGAGAATTTGTCTTTTTTACATAGTTTAAGTGTTTGGTTTA
GGTGTTTCCATGTTTAAGTGGTTTCCCCCTTGGCTCTGATACCACACTGA
CCGAGAGCCTCACAAACTA
back to top