Pisum_sativum_v1_Contig2501

Contig Overview


Name	Pisum_sativum_v1_Contig2501
Unique Name	Pisum_sativum_v1_Contig2501
Type	contig
Organism	Pisum sativum (pea)
Sequence length	688

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
FG531418	EST	FG531418:152..582 +
EX568864	EST	EX568864:1..630 +
EX568865	EST	EX568865:24..648 +
FG529923	EST	FG529923:138..688 +
FG530782	EST	FG530782:152..687 +

Unigenes

This contig is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Pisum sativum unigene v1	Pisum sativum unigene v1	contig

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Pisum sativum unigene v1	2010-12-27
Homology Analysis: Pisum sativum unigene v1 vs Trembl	2010-12-28
Homology Analysis: Pisum sativum unigene v1 vs Swissprot	2010-12-28
Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide	2011-02-03
InterProScan analysis for Pisum sativum unigene v1	2010-12-29

Relationships

The following EST feature(s) are a part of this contig:


Feature Name	Unique Name	Species	Type
FG531418	FG531418	Pisum sativum	EST
EX568864	EX568864	Pisum sativum	EST
EX568865	EX568865	Pisum sativum	EST
FG529923	FG529923	Pisum sativum	EST
FG530782	FG530782	Pisum sativum	EST

Homology

[Close]

BLAST of Pisum_sativum_v1_Contig2501 vs. SwissProt
Match: Y5621_ARATH (PHD finger protein At5g26210 OS=Arabidopsis thaliana GN=At5g26210 PE=1 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 1.659e-27
Identity = 64/132 (48.48%), Postives = 77/132 (58.33%), Query Frame = 2

Query:    2 MINELPTIFEIVNGSTKKPAKEXXXXXXXXXXXXXXXXXXRAPETQSRLPKALQPKXXXXXXXXXXXXXXXX----AMCGACGDNDGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSSNKRAR 385
            M+N+LPTIFE+V G+ KK  K+                  R  E++++  K  +PK                      CGACG++   DEFWICCD+CE WFHGKCVKITPARAEHIKQYKCPSC SNKRAR
Sbjct:  126 MVNDLPTIFEVVAGTAKKQGKDKSSVSNNSSNRSKSSSK-RGSESRAKFSKP-EPKDDEEEEEEGVEEEDEDEQGETQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSC-SNKRAR 254

[Close]

BLAST of Pisum_sativum_v1_Contig2501 vs. SwissProt
Match: NU301_DROME (Nucleosome-remodeling factor subunit NURF301 OS=Drosophila melanogaster GN=E(bx) PE=1 SV=2)

HSP 1 Score: 57.7658 bits (138), Expect = 6.553e-8
Identity = 23/55 (41.82%), Postives = 30/55 (54.55%), Query Frame = 2

Query:  230 ACGDNDGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSSNKRAR*QN 394
            +C       +F+ICCD C+ WFHG+CV I  + AE I +Y CP C     A   N
Sbjct: 2499 SCRQPYDESQFYICCDKCQDWFHGRCVGILQSEAEFIDEYVCPECQRKNDANAAN 2553

[Close]

BLAST of Pisum_sativum_v1_Contig2501 vs. TrEMBL
Match: A0FK63_MEDTR (PHD3 OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 2.146e-38
Identity = 79/129 (61.24%), Postives = 85/129 (65.89%), Query Frame = 2

Query:    2 MINELPTIFEIVNGSTKKPAKEXXXXXXXXXXXXXXXXXXRAPETQSRLPKA-LQPKXXXXXXXXXXXXXXXXAMCGACGDNDGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSSNKRAR 385
            +INELPT+FE+V G+ KK  KE                  RAPE QSR PKA L PK                A CGACGD++G DEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSSNKRAR
Sbjct:  122 LINELPTVFEVVTGAAKKQVKEKSSVSNNSGSKSKSSSKARAPEAQSRQPKAALLPKDEEEELEEQDDDEQGEATCGACGDSNGADEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSSNKRAR 250

[Close]

BLAST of Pisum_sativum_v1_Contig2501 vs. TrEMBL
Match: C6TI23_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 4.475e-36
Identity = 76/128 (59.38%), Postives = 83/128 (64.84%), Query Frame = 2

Query:    2 MINELPTIFEIVNGSTKKPAKEXXXXXXXXXXXXXXXXXXRAPETQSRLPKALQPKXXXXXXXXXXXXXXXXAMCGACGDNDGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSSNKRAR 385
            MINELPTIFE+V G+ KK  KE                  RA E+Q+R PK LQ K                 +CGACG++ GTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSC SNKRAR
Sbjct:  125 MINELPTIFEVVTGAAKKQVKEKSSVSNHSGSKSKSSSKQRASESQARQPKPLQSKEEDEELDDQDDDEHGETLCGACGEHYGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSC-SNKRAR 251

[Close]

BLAST of Pisum_sativum_v1_Contig2501 vs. TrEMBL
Match: Q06A73_SOYBN (PHD1 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 5.845e-36
Identity = 78/129 (60.47%), Postives = 84/129 (65.12%), Query Frame = 2

Query:    2 MINELPTIFEIVNGSTKKPAKEXXXXXXXXXXXXXXXXXX-RAPETQSRLPKALQPKXXXXXXXXXXXXXXXXAMCGACGDNDGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSSNKRAR 385
            MINELPTIFE+V G+ KK  KE                   RAPE+QSR  K LQPK                 +CGACG++ GTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSC SNKRAR
Sbjct:  125 MINELPTIFEVVTGAAKKQVKEKSSVSNHSGSKSKSSSKAQRAPESQSRQSKPLQPKDEDEELDDQDDDEHGETLCGACGEHYGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSC-SNKRAR 252

[Close]

BLAST of Pisum_sativum_v1_Contig2501 vs. TrEMBL
Match: Q06A77_SOYBN (PHD3 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 4.189e-34
Identity = 76/128 (59.38%), Postives = 80/128 (62.50%), Query Frame = 2

Query:    2 MINELPTIFEIVNGSTKKPAKEXXXXXXXXXXXXXXXXXXRAPETQSRLPKALQPKXXXXXXXXXXXXXXXXAMCGACGDNDGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSSNKRAR 385
            MINELPTIFE+V  + KK  KE                  RA ETQ R  K LQPK                 +CGAC +N GTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSC SNKRAR
Sbjct:  122 MINELPTIFEVV--TAKKQVKEKSSVSNNSGSKSKSNSKARASETQGRQSKPLQPKDEDEGLEEEDNDEHGDTLCGACSENYGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSC-SNKRAR 246

[Close]

BLAST of Pisum_sativum_v1_Contig2501 vs. TrEMBL
Match: C6TNX1_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 5.471e-34
Identity = 75/129 (58.14%), Postives = 82/129 (63.57%), Query Frame = 2

Query:    2 MINELPTIFEIVNGSTKKPAKEXXXXXXXXXXXXXXXXXX-RAPETQSRLPKALQPKXXXXXXXXXXXXXXXXAMCGACGDNDGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSSNKRAR 385
            MINELP IFE+V G+ KK  KE                   RA E+Q+R PK LQ K                 +CGACG++ GTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSC SNKRAR
Sbjct:  125 MINELPIIFEVVTGAAKKQVKEKSSVSNHSGSKSKSSSKAQRASESQARQPKPLQSKEEDEELDDQDDDEHGETLCGACGEHYGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSC-SNKRAR 252

[Close]

BLAST of Pisum_sativum_v1_Contig2501 vs. TrEMBL
Match: A0FK62_MEDTR (PHD1 OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.715e-33
Identity = 72/130 (55.38%), Postives = 83/130 (63.85%), Query Frame = 2

Query:    2 MINELPTIFEIVNGSTKKPAKEXXXXXXXXXXXXXXXXXXRAPETQSRLPKALQ-PKXXXXXXXXXXXXXXXX-AMCGACGDNDGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSSNKRAR 385
            MIN+LP+I+E+V G+ KK  KE                  RAPE Q +  K L+ PK                  +CGACG++ GTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCS+NKRAR
Sbjct:  126 MINDLPSIYEVVTGAAKKQVKEKSSVSNHSGSKSKSSSKARAPEPQVKQTKPLELPKDDEVEELDEEDEDEHGETLCGACGEHYGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNNKRAR 255

[Close]

BLAST of Pisum_sativum_v1_Contig2501 vs. TrEMBL
Match: B9GVE0_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_830643 PE=4 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.921e-32
Identity = 70/129 (54.26%), Postives = 82/129 (63.57%), Query Frame = 2

Query:    2 MINELPTIFEIVNGSTKKPAKEXXXXXXXXXXXXXXXXXXRAPETQSRLPK-ALQPKXXXXXXXXXXXXXXXXAMCGACGDNDGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSSNKRAR 385
            MINELPTIFE+V+G+ K+P  +                  R PE+Q++  K +  PK                A CGACG++ GTDEFWICCDICEKWFHGKCVKITPA+AEHIKQYKCPSC S KRAR
Sbjct:  126 MINELPTIFEVVSGNVKQPKDQSATHNNSGKSKSSGKMQSRQPESQTKAVKVSAPPKEDYESGEEEEEDDEQGATCGACGESYGTDEFWICCDICEKWFHGKCVKITPAKAEHIKQYKCPSC-SGKRAR 253

[Close]

BLAST of Pisum_sativum_v1_Contig2501 vs. TrEMBL
Match: Q287W1_OLIPU (PHD finger/nucleic acid binding protein OS=Olimarabidopsis pumila GN=Op_42790 PE=4 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 8.734e-32
Identity = 69/128 (53.91%), Postives = 80/128 (62.50%), Query Frame = 2

Query:    2 MINELPTIFEIVNGSTKKPAKEXXXXXXXXXXXXXXXXXXRAPETQSRLPKALQPKXXXXXXXXXXXXXXXXAMCGACGDNDGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSSNKRAR 385
            MIN++PTIFE+V G  KK +K+                  R  + +S   KA+Q K                 +CGACGD+DG DEFWICCD+CEKWFHGKCVKITPARAEHIKQYKCPSC SNKRAR
Sbjct:  127 MINDVPTIFEVVTGMAKKQSKDKSSSANQNGNKSKSNSKVRTSDGKSS--KAMQVKDEDEEVDEEDEDDHGETLCGACGDSDGADEFWICCDLCEKWFHGKCVKITPARAEHIKQYKCPSC-SNKRAR 251

[Close]

BLAST of Pisum_sativum_v1_Contig2501 vs. TrEMBL
Match: B7FIN7_MEDTR (Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 8.734e-32
Identity = 71/131 (54.20%), Postives = 83/131 (63.36%), Query Frame = 2

Query:    2 MINELPTIFEIVNGSTKKPAKEXXXXXXXXXXXXXXXXXX-RAPETQSRLPKALQ-PKXXXXXXXXXXXXXXXX-AMCGACGDNDGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSSNKRAR 385
            MIN+LP+I+E+V G+ KK  KE                   RAPE Q +  K L+ PK                  +CGACG++ GTDEFWICCDICEKWFHGKCVK+TPARAEHIKQYKCPSCS+NKRAR
Sbjct:  126 MINDLPSIYEVVTGAAKKQVKEKSSVSNHSGSKSKSSSKAQRAPEPQVKQTKPLELPKDDEVEELDEEDEDEHGETLCGACGEHYGTDEFWICCDICEKWFHGKCVKVTPARAEHIKQYKCPSCSNNKRAR 256

[Close]

BLAST of Pisum_sativum_v1_Contig2501 vs. TrEMBL
Match: A9NZI0_PICSI (Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 8.734e-32
Identity = 68/128 (53.12%), Postives = 78/128 (60.94%), Query Frame = 2

Query:    2 MINELPTIFEIVNGSTKKPAKEXXXXXXXXXXXXXXXXXXRAPETQSRLPKALQPKXXXXXXXXXXXXXXXXAMCGACGDNDGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSSNKRAR 385
            MINELPTIFE+V G+ KK +KE                  R  E+Q++  K   PK                 +CGACG+N  +DEFWICCD+CEKWFHGKCVKITPARAEHIK YKCPSC SNKR R
Sbjct:  135 MINELPTIFEVVTGAAKKQSKEKSTVTNNSSSKNKSGIKPRVSESQTKSSKLPPPKDEDDTLDEEEDDEHGDTLCGACGENYASDEFWICCDMCEKWFHGKCVKITPARAEHIKHYKCPSC-SNKRPR 261

[Close]

BLAST of Pisum_sativum_v1_Contig2501 vs. TAIR peptide
Match: AT3G42790.1 (| Symbols: AL3 | alfin-like 3 | chr3:14878128-14879618 REVERSE LENGTH=250)

HSP 1 Score: 137.117 bits (344), Expect = 8.579e-33
Identity = 70/128 (54.69%), Postives = 78/128 (60.94%), Query Frame = 2

Query:    2 MINELPTIFEIVNGSTKKPAKEXXXXXXXXXXXXXXXXXXRAPETQSRLPKALQPKXXXXXXXXXXXXXXXXAMCGACGDNDGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSSNKRAR 385
            MIN++PTIFE+V G  K  AK+                  R  E +S   K  QPK                 +CGACGD+DG DEFWICCD+CEKWFHGKCVKITPARAEHIKQYKCPSC SNKRAR
Sbjct:  127 MINDVPTIFEVVTGMAK--AKDKSSAANQNGNKSKSNSKVRTSEGKSS--KTKQPKEEDEEIDEDDEDDHGETLCGACGDSDGADEFWICCDLCEKWFHGKCVKITPARAEHIKQYKCPSC-SNKRAR 249

[Close]

BLAST of Pisum_sativum_v1_Contig2501 vs. TAIR peptide
Match: AT2G02470.1 (| Symbols: AL6 | alfin-like 6 | chr2:652837-654621 FORWARD LENGTH=256)

HSP 1 Score: 129.028 bits (323), Expect = 2.336e-30
Identity = 67/133 (50.38%), Postives = 79/133 (59.40%), Query Frame = 2

Query:    2 MINELPTIFEIVNGSTKKPAKEXXXXXXXXXXXXXXXXXXRAPETQSRLPKALQP-----KXXXXXXXXXXXXXXXXAMCGACGDNDGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSSNKRAR 385
            MINELPTIFE+V+G+ K+   +                  R  E+ S++ K   P     +                A+CGACGDN GTDEFWICCD CEKWFHGKCVKITPA+AEHIK YKCP+C SNKRAR
Sbjct:  126 MINELPTIFEVVSGNAKQ--SKDLSVNNNNSKSKPSGVKSRQSESLSKVAKMSSPPPKEEEEEEDESEDESEDDEQGAVCGACGDNYGTDEFWICCDACEKWFHGKCVKITPAKAEHIKHYKCPTC-SNKRAR 255

[Close]

BLAST of Pisum_sativum_v1_Contig2501 vs. TAIR peptide
Match: AT2G02470.2 (| Symbols: AL6 | alfin-like 6 | chr2:652837-654621 FORWARD LENGTH=247)

HSP 1 Score: 127.487 bits (319), Expect = 6.797e-30
Identity = 66/128 (51.56%), Postives = 77/128 (60.16%), Query Frame = 2

Query:    2 MINELPTIFEIVNGSTKKPAKEXXXXXXXXXXXXXXXXXXRAPETQSRLPKALQPKXXXXXXXXXXXXXXXXAMCGACGDNDGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSSNKRAR 385
            MINELPTIFE+V+G+    AK+                  +  +  S  PK  + +                A+CGACGDN GTDEFWICCD CEKWFHGKCVKITPA+AEHIK YKCP+C SNKRAR
Sbjct:  126 MINELPTIFEVVSGN----AKQSKDLSVNNNNSKSKPSGVKVAKMSSPPPK--EEEEEEDESEDESEDDEQGAVCGACGDNYGTDEFWICCDACEKWFHGKCVKITPAKAEHIKHYKCPTC-SNKRAR 246

[Close]

BLAST of Pisum_sativum_v1_Contig2501 vs. TAIR peptide
Match: AT1G14510.1 (| Symbols: AL7 | alfin-like 7 | chr1:4962171-4964154 REVERSE LENGTH=252)

HSP 1 Score: 127.102 bits (318), Expect = 8.877e-30
Identity = 60/128 (46.88%), Postives = 75/128 (58.59%), Query Frame = 2

Query:    2 MINELPTIFEIVNGSTKKPAKEXXXXXXXXXXXXXXXXXXRAPETQSRLPKALQPKXXXXXXXXXXXXXXXXAMCGACGDNDGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSSNKRAR 385
            MIN+LPTIFE+V G+ K+   +                  R  E+ ++  K   P                 A+CGACGDN G DEFWICCD CEKWFHGKCVKITPA+AEHIK YKCPSC+++K+ +
Sbjct:  126 MINDLPTIFEVVTGNAKQSKDQSANHNSSRSKSSGGKP--RHSESHTKASKMSPPPRKEDESGDEDEDDEQGAVCGACGDNYGGDEFWICCDACEKWFHGKCVKITPAKAEHIKHYKCPSCTTSKKMK 251

[Close]

BLAST of Pisum_sativum_v1_Contig2501 vs. TAIR peptide
Match: AT5G20510.1 (| Symbols: AL5 | alfin-like 5 | chr5:6939991-6942846 REVERSE LENGTH=260)

HSP 1 Score: 123.25 bits (308), Expect = 1.282e-28
Identity = 63/136 (46.32%), Postives = 77/136 (56.62%), Query Frame = 2

Query:    2 MINELPTIFEIVNGSTKKPAKEXXXXXXXXXXXXXXXXXXRAPETQSRLPKALQPKXXXXXXXXXXXXXXXX--------AMCGACGDNDGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSSNKRAR 385
            MINE+PT++E+V G+ +K  KE                  R  E++S   K +  K                         +CGACGDN  +DEFWICCD+CEKWFHG+CVKITPARAEHIK YKCP+C SNKRAR
Sbjct:  127 MINEVPTVYEVVTGNAEKQTKEMPSSANQNGNRSKSNSKMRGLESKSS--KTIHAKDEEEGLELEEGEEEEDEDEDEHGETLCGACGDNYASDEFWICCDMCEKWFHGECVKITPARAEHIKHYKCPTC-SNKRAR 259

[Close]

BLAST of Pisum_sativum_v1_Contig2501 vs. TAIR peptide
Match: AT5G26210.1 (| Symbols: AL4 | alfin-like 4 | chr5:9158566-9160221 REVERSE LENGTH=255)

HSP 1 Score: 122.865 bits (307), Expect = 1.674e-28
Identity = 64/132 (48.48%), Postives = 77/132 (58.33%), Query Frame = 2

Query:    2 MINELPTIFEIVNGSTKKPAKEXXXXXXXXXXXXXXXXXXRAPETQSRLPKALQPKXXXXXXXXXXXXXXXX----AMCGACGDNDGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSSNKRAR 385
            M+N+LPTIFE+V G+ KK  K+                  R  E++++  K  +PK                      CGACG++   DEFWICCD+CE WFHGKCVKITPARAEHIKQYKCPSC SNKRAR
Sbjct:  126 MVNDLPTIFEVVAGTAKKQGKDKSSVSNNSSNRSKSSSK-RGSESRAKFSKP-EPKDDEEEEEEGVEEEDEDEQGETQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSC-SNKRAR 254

[Close]

BLAST of Pisum_sativum_v1_Contig2501 vs. TAIR peptide
Match: AT5G05610.2 (| Symbols: AL1 | alfin-like 1 | chr5:1677331-1678942 REVERSE LENGTH=241)

HSP 1 Score: 110.153 bits (274), Expect = 1.123e-24
Identity = 54/125 (43.20%), Postives = 71/125 (56.80%), Query Frame = 2

Query:    2 MINELPTIFEIVNGSTKKPAKEXXXXXXXXXXXXXXXXXXRAPETQSRLPKALQPKXXXXXXXXXXXXXXXXAMCGACGDNDGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSSNK 376
            +IN+LPT+FE+V G  +KP K+                     +T+S  PK ++                   +CG+CG N   DEFWICCD+CE+W+HGKCVKITPA+AE IKQYKCPSC + K
Sbjct:  123 LINDLPTLFEVVTG--RKPIKDGKPSMDLGSKSRNGVKRSIEGQTKST-PKLMEESYEDEDDEHGD------TLCGSCGGNYTNDEFWICCDVCERWYHGKCVKITPAKAESIKQYKCPSCCTKK 238

[Close]

BLAST of Pisum_sativum_v1_Contig2501 vs. TAIR peptide
Match: AT5G05610.1 (| Symbols: AL1 | alfin-like 1 | chr5:1677331-1678942 REVERSE LENGTH=241)

HSP 1 Score: 110.153 bits (274), Expect = 1.123e-24
Identity = 54/125 (43.20%), Postives = 71/125 (56.80%), Query Frame = 2

Query:    2 MINELPTIFEIVNGSTKKPAKEXXXXXXXXXXXXXXXXXXRAPETQSRLPKALQPKXXXXXXXXXXXXXXXXAMCGACGDNDGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSSNK 376
            +IN+LPT+FE+V G  +KP K+                     +T+S  PK ++                   +CG+CG N   DEFWICCD+CE+W+HGKCVKITPA+AE IKQYKCPSC + K
Sbjct:  123 LINDLPTLFEVVTG--RKPIKDGKPSMDLGSKSRNGVKRSIEGQTKST-PKLMEESYEDEDDEHGD------TLCGSCGGNYTNDEFWICCDVCERWYHGKCVKITPAKAESIKQYKCPSCCTKK 238

[Close]

BLAST of Pisum_sativum_v1_Contig2501 vs. TAIR peptide
Match: AT3G11200.2 (| Symbols: AL2 | alfin-like 2 | chr3:3508387-3510195 REVERSE LENGTH=233)

HSP 1 Score: 104.375 bits (259), Expect = 6.162e-23
Identity = 49/125 (39.20%), Postives = 69/125 (55.20%), Query Frame = 2

Query:    2 MINELPTIFEIVNGSTKKPAKEXXXXXXXXXXXXXXXXXXRAPETQSRLPKALQPKXXXXXXXXXXXXXXXXAMCGACGDNDGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSSNK 376
            +IN+LPT+F++V G  +K  K+                     +T+S  PK ++                   +CG+CG +   +EFWICCD+CE+W+HGKCVKITPA+AE IKQYKCP C + K
Sbjct:  112 LINDLPTLFDVVTG--RKAMKDNKPSSDSGSKSRNGTKRSIDGQTKSSTPKLMEESYEEEEEEDEHGD----TLCGSCGGHYTNEEFWICCDVCERWYHGKCVKITPAKAESIKQYKCPPCCAKK 230

[Close]

BLAST of Pisum_sativum_v1_Contig2501 vs. TAIR peptide
Match: AT3G11200.1 (| Symbols: AL2 | alfin-like 2 | chr3:3508387-3510418 REVERSE LENGTH=246)

HSP 1 Score: 104.375 bits (259), Expect = 6.162e-23
Identity = 49/125 (39.20%), Postives = 69/125 (55.20%), Query Frame = 2

Query:    2 MINELPTIFEIVNGSTKKPAKEXXXXXXXXXXXXXXXXXXRAPETQSRLPKALQPKXXXXXXXXXXXXXXXXAMCGACGDNDGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSSNK 376
            +IN+LPT+F++V G  +K  K+                     +T+S  PK ++                   +CG+CG +   +EFWICCD+CE+W+HGKCVKITPA+AE IKQYKCP C + K
Sbjct:  125 LINDLPTLFDVVTG--RKAMKDNKPSSDSGSKSRNGTKRSIDGQTKSSTPKLMEESYEEEEEEDEHGD----TLCGSCGGHYTNEEFWICCDVCERWYHGKCVKITPAKAESIKQYKCPPCCAKK 243

The following BLAST results are available for this feature:

BLAST of Pisum_sativum_v1_Contig2501 vs. SwissProt
BLAST of Pisum_sativum_v1_Contig2501 vs. TrEMBL
BLAST of Pisum_sativum_v1_Contig2501 vs. TAIR peptide

BLAST of Pisum_sativum_v1_Contig2501 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Swissprot)
Total hits: 2


Match Name	E-value	Identity	Description
Y5621_ARATH	1.659e-27	48.48	PHD finger protein At5g26210 OS=Arabidopsis thalia...	[more]
NU301_DROME	6.553e-8	41.82	Nucleosome-remodeling factor subunit NURF301 OS=Dr...	[more]

BLAST of Pisum_sativum_v1_Contig2501 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
A0FK63_MEDTR	2.146e-38	61.24	PHD3 OS=Medicago truncatula PE=2 SV=1	[more]
C6TI23_SOYBN	4.475e-36	59.38	Putative uncharacterized protein OS=Glycine max PE...	[more]
Q06A73_SOYBN	5.845e-36	60.47	PHD1 OS=Glycine max PE=2 SV=1	[more]
Q06A77_SOYBN	4.189e-34	59.38	PHD3 OS=Glycine max PE=2 SV=1	[more]
C6TNX1_SOYBN	5.471e-34	58.14	Putative uncharacterized protein OS=Glycine max PE...	[more]
A0FK62_MEDTR	2.715e-33	55.38	PHD1 OS=Medicago truncatula PE=2 SV=1	[more]
B9GVE0_POPTR	3.921e-32	54.26	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
Q287W1_OLIPU	8.734e-32	53.91	PHD finger/nucleic acid binding protein OS=Olimara...	[more]
B7FIN7_MEDTR	8.734e-32	54.20	Putative uncharacterized protein OS=Medicago trunc...	[more]
A9NZI0_PICSI	8.734e-32	53.13	Putative uncharacterized protein OS=Picea sitchens...	[more]

BLAST of Pisum_sativum_v1_Contig2501 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide)
Total hits: 10


Match Name	E-value	Identity	Description
AT3G42790.1	8.579e-33	54.69	\| Symbols: AL3 \| alfin-like 3 \| chr3:14878128-1487...	[more]
AT2G02470.1	2.336e-30	50.38	\| Symbols: AL6 \| alfin-like 6 \| chr2:652837-654621...	[more]
AT2G02470.2	6.797e-30	51.56	\| Symbols: AL6 \| alfin-like 6 \| chr2:652837-654621...	[more]
AT1G14510.1	8.877e-30	46.88	\| Symbols: AL7 \| alfin-like 7 \| chr1:4962171-49641...	[more]
AT5G20510.1	1.282e-28	46.32	\| Symbols: AL5 \| alfin-like 5 \| chr5:6939991-69428...	[more]
AT5G26210.1	1.674e-28	48.48	\| Symbols: AL4 \| alfin-like 4 \| chr5:9158566-91602...	[more]
AT5G05610.2	1.123e-24	43.20	\| Symbols: AL1 \| alfin-like 1 \| chr5:1677331-16789...	[more]
AT5G05610.1	1.123e-24	43.20	\| Symbols: AL1 \| alfin-like 1 \| chr5:1677331-16789...	[more]
AT3G11200.2	6.162e-23	39.20	\| Symbols: AL2 \| alfin-like 2 \| chr3:3508387-35101...	[more]
AT3G11200.1	6.162e-23	39.20	\| Symbols: AL2 \| alfin-like 2 \| chr3:3508387-35104...	[more]

InterPro

Analysis Name: InterProScan analysis for Pisum sativum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001965	Zinc finger, PHD-type	SMART	SM00249	no description	coord: 74..122 score: 7.2
IPR011011	Zinc finger, FYVE/PHD-type	SUPERFAMILY	57903	FYVE/PHD zinc finger	coord: 37..121 score: 4.5
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	no description	coord: 69..125 score: 5.4
IPR019786	Zinc finger, PHD-type, conserved site	PROSITE	PS01359	ZF_PHD_1	coord: 75..121 score
IPR019787	Zinc finger, PHD-finger	PFAM	PF00628	PHD	coord: 74..123 score: 1.5
IPR019787	Zinc finger, PHD-finger	PROFILE	PS50016	ZF_PHD_2	coord: 72..124 score: 9
None	No IPR available	PANTHER	PTHR23123	PHD/F-BOX CONTAINING PROTEIN	coord: 78..122 score: 2.5
None	No IPR available	SEG	seg	seg	coord: 23..40 score: NAcoord: 57..72 score
None	No IPR available	SEG	seg	seg	coord: 55..69 score
None	No IPR available	SEG	seg	seg	coord: 3..7 score: NAcoord: 34..44 score: NAcoord: 57..73 score
None	No IPR available	SEG	seg	seg	coord: 51..66 score
None	No IPR available	SEG	seg	seg	coord: 26..57 score

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>Pisum_sativum_v1_Contig2501 ID=Pisum_sativum_v1_Contig2501; Name=Pisum_sativum_v1_Contig2501; organism=Pisum sativum; type=contig; length=688bp
TATGATTAATGAACTACCAACAATATTTGAAATTGTTAATGGCTCAACCA
AGAAACCAGCCAAAGAGAAGTCCTCAGTCTCAAATAACAGTGGCAGCAAA
TCTAAGTCCAGTTCTAAAGTGCGGGCTCCTGAAACTCAGAGCAGACTACC
AAAGGCATTACAACCAAAAGATGAGGAGGAAGGACTGGAAGAGAATGATG
ATGATGAACATGGAGAAGCCATGTGTGGGGCTTGTGGTGATAATGATGGC
ACTGATGAGTTCTGGATTTGCTGTGATATTTGTGAGAAGTGGTTCCATGG
CAAATGTGTGAAAATCACTCCAGCACGGGCCGAGCATATCAAGCAATACA
AGTGCCCCTCATGCAGTAGTAACAAGAGAGCTCGCTAGCAAAATTTCATT
CAGAGACAAACTATGTTGGAGTCTTTACTGATCTGGTTAATATGCTTTTG
TTTCTTAGATGAAGTTGATGGATAGTTTTTATGAAGTTTAAGACATAGGT
TTCTTTTTTATGCCCTTCTTTGGTATATGTATGTATCCGTAGTTGAAGCA
TTGTTTACTGGGAAAAGCCAAGTCTTTTCTCTAGTCTCGTTTTGGCTATT
GAACCACAATATGCTGGGCTGGTAACATTAATGTTTGGAAATTTTAGCAA
AACGACATTTGCACCAAATGAAGGAATGACATTTTCCC

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0008270	zinc ion binding

Vocabulary: **INTERPRO**
Term	Definition
IPR001965	Znf_PHD
IPR011011	Znf_FYVE_PHD
IPR013083	Znf_RING/FYVE/PHD
IPR019786	Zinc_finger_PHD-type_CS
IPR019787	Znf_PHD-finger

Search form

Pisum_sativum_v1_Contig2501