Pisum_sativum_v1_Contig2505

Contig Overview


Name	Pisum_sativum_v1_Contig2505
Unique Name	Pisum_sativum_v1_Contig2505
Type	contig
Organism	Pisum sativum (pea)
Sequence length	481

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
EX568766	EST	EX568766:1..442 +
FG531486	EST	FG531486:5..481 +

Unigenes

This contig is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Pisum sativum unigene v1	Pisum sativum unigene v1	contig

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Pisum sativum unigene v1	2010-12-27
KEGG analysis for Pisum sativum unigene v1	2011-01-05
Homology Analysis: Pisum sativum unigene v1 vs Trembl	2010-12-28
Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide	2011-02-03
InterProScan analysis for Pisum sativum unigene v1	2010-12-29

Relationships

The following EST feature(s) are a part of this contig:


Feature Name	Unique Name	Species	Type
EX568766	EX568766	Pisum sativum	EST
FG531486	FG531486	Pisum sativum	EST

Homology

[Close]

BLAST of Pisum_sativum_v1_Contig2505 vs. TrEMBL
Match: B7FGX9_MEDTR (Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.093e-11
Identity = 37/57 (64.91%), Postives = 37/57 (64.91%), Query Frame = 3

Query:    6 PMAYIEFIDRDNELRXXXXXXXXXXXXXXXXXWTRSRLTRQFAPPKVEKSDSDL*LI 176
            PMAYIE IDRDNELR                 WTRSRLTRQFAPPKVEKSDSD  LI
Sbjct:  106 PMAYIELIDRDNELRLSKPPTPQPPQRTPLDPWTRSRLTRQFAPPKVEKSDSDSDLI 162

[Close]

BLAST of Pisum_sativum_v1_Contig2505 vs. TrEMBL
Match: C6SWX5_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 5.800e-9
Identity = 32/54 (59.26%), Postives = 35/54 (64.81%), Query Frame = 3

Query:    6 PMAYIEFIDRDNELRXXXXXXXXXXXXXXXXXWTRSRLTRQFAPPKVEKSDSDL 167
            PMAYIEFIDR+NELR                 WTRSRL+RQFAPPK +KS SDL
Sbjct:  106 PMAYIEFIDRENELRQAKAPTPQPPQRAPLDPWTRSRLSRQFAPPKEDKSGSDL 159

[Close]

BLAST of Pisum_sativum_v1_Contig2505 vs. TrEMBL
Match: C6TF54_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 2.204e-8
Identity = 31/54 (57.41%), Postives = 34/54 (62.96%), Query Frame = 3

Query:    6 PMAYIEFIDRDNELRXXXXXXXXXXXXXXXXXWTRSRLTRQFAPPKVEKSDSDL 167
            PMAYIEFIDR+NELR                 W RSRL+RQFAPPK +KS SDL
Sbjct:  106 PMAYIEFIDRENELRQAKAPTPQPPQRAPLDPWARSRLSRQFAPPKEDKSGSDL 159

[Close]

BLAST of Pisum_sativum_v1_Contig2505 vs. TrEMBL
Match: Q8LC38_ARATH (50S ribosomal protein L17 OS=Arabidopsis thaliana PE=2 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 2.879e-8
Identity = 33/55 (60.00%), Postives = 35/55 (63.64%), Query Frame = 3

Query:    6 PMAYIEFIDRDNELRXXXXXXXXXXXXXXXXXWTRSRLTRQFAPPKVEK-SDSDL 167
            PMAYIEFIDR+NELR                 W RSRLTRQ+APPK EK SDSDL
Sbjct:  106 PMAYIEFIDRENELRQSKPATPQPPPRVPLDPWARSRLTRQYAPPKEEKTSDSDL 160

[Close]

BLAST of Pisum_sativum_v1_Contig2505 vs. TrEMBL
Match: Q8GXF2_ARATH (Putative 50S ribosomal protein L17 OS=Arabidopsis thaliana GN=At5g64650/MUB3_17 PE=2 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 2.879e-8
Identity = 33/55 (60.00%), Postives = 35/55 (63.64%), Query Frame = 3

Query:    6 PMAYIEFIDRDNELRXXXXXXXXXXXXXXXXXWTRSRLTRQFAPPKVEK-SDSDL 167
            PMAYIEFIDR+NELR                 W RSRLTRQ+APPK EK SDSDL
Sbjct:   92 PMAYIEFIDRENELRQSKPATPQPPPRVPLDPWARSRLTRQYAPPKEEKTSDSDL 146

[Close]

BLAST of Pisum_sativum_v1_Contig2505 vs. TrEMBL
Match: Q1ECK2_ARATH (At5g64650 OS=Arabidopsis thaliana GN=At5g64650 PE=2 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 2.879e-8
Identity = 33/55 (60.00%), Postives = 35/55 (63.64%), Query Frame = 3

Query:    6 PMAYIEFIDRDNELRXXXXXXXXXXXXXXXXXWTRSRLTRQFAPPKVEK-SDSDL 167
            PMAYIEFIDR+NELR                 W RSRLTRQ+APPK EK SDSDL
Sbjct:  106 PMAYIEFIDRENELRQSKPATPQPPPRVPLDPWARSRLTRQYAPPKEEKTSDSDL 160

[Close]

BLAST of Pisum_sativum_v1_Contig2505 vs. TrEMBL
Match: D7MRW2_ARALY (Ribosomal protein L17 family protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_496679 PE=4 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 2.879e-8
Identity = 33/55 (60.00%), Postives = 35/55 (63.64%), Query Frame = 3

Query:    6 PMAYIEFIDRDNELRXXXXXXXXXXXXXXXXXWTRSRLTRQFAPPKVEKS-DSDL 167
            PMAYIEFIDR+NELR                 W RSRLTRQ+APPK EKS DSDL
Sbjct:  106 PMAYIEFIDRENELRQSKPATPQPPPRVPLDPWARSRLTRQYAPPKEEKSWDSDL 160

[Close]

BLAST of Pisum_sativum_v1_Contig2505 vs. TrEMBL
Match: B9H473_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_650590 PE=3 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 2.879e-8
Identity = 31/50 (62.00%), Postives = 32/50 (64.00%), Query Frame = 3

Query:    6 PMAYIEFIDRDNELRXXXXXXXXXXXXXXXXXWTRSRLTRQFAPPKVEKS 155
            PMAYIEFIDR+NELR                 WTRSRLTRQFAPPK EKS
Sbjct:  106 PMAYIEFIDRENELRQSKPPTPQPPQRAPLDPWTRSRLTRQFAPPKEEKS 155

[Close]

BLAST of Pisum_sativum_v1_Contig2505 vs. TrEMBL
Match: D7M271_ARALY (Ribosomal protein L17 family protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_908925 PE=4 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 1.094e-7
Identity = 32/55 (58.18%), Postives = 35/55 (63.64%), Query Frame = 3

Query:    6 PMAYIEFIDRDNELRXXXXXXXXXXXXXXXXXWTRSRLTRQFAPPKVEK-SDSDL 167
            PMAYIEFIDR+NELR                 W RSRLT+QFAPPK EK SDS+L
Sbjct:  106 PMAYIEFIDRENELRQSKPATPQPPQRVPLDPWERSRLTKQFAPPKEEKSSDSEL 160

[Close]

BLAST of Pisum_sativum_v1_Contig2505 vs. TrEMBL
Match: Q8LD39_ARATH (At5g09770 OS=Arabidopsis thaliana GN=At5g09770 PE=2 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 1.866e-7
Identity = 32/55 (58.18%), Postives = 34/55 (61.82%), Query Frame = 3

Query:    6 PMAYIEFIDRDNELRXXXXXXXXXXXXXXXXXWTRSRLTRQFAPPKVEK-SDSDL 167
            PMAYIEFIDR+NELR                 W RSRLTRQFAPPK EK  DS+L
Sbjct:  106 PMAYIEFIDRENELRQSKPATPQPPQRVPLDPWERSRLTRQFAPPKEEKIPDSEL 160

[Close]

BLAST of Pisum_sativum_v1_Contig2505 vs. TAIR peptide
Match: AT5G64650.1 (| Symbols: | Ribosomal protein L17 family protein | chr5:25839542-25840775 REVERSE LENGTH=160)

HSP 1 Score: 61.6178 bits (148), Expect = 2.362e-10
Identity = 33/55 (60.00%), Postives = 35/55 (63.64%), Query Frame = 3

Query:    6 PMAYIEFIDRDNELRXXXXXXXXXXXXXXXXXWTRSRLTRQFAPPKVEK-SDSDL 167
            PMAYIEFIDR+NELR                 W RSRLTRQ+APPK EK SDSDL
Sbjct:  106 PMAYIEFIDRENELRQSKPATPQPPPRVPLDPWARSRLTRQYAPPKEEKTSDSDL 160

[Close]

BLAST of Pisum_sativum_v1_Contig2505 vs. TAIR peptide
Match: AT5G09770.1 (| Symbols: | Ribosomal protein L17 family protein | chr5:3035267-3036518 REVERSE LENGTH=160)

HSP 1 Score: 58.9214 bits (141), Expect = 1.531e-9
Identity = 32/55 (58.18%), Postives = 34/55 (61.82%), Query Frame = 3

Query:    6 PMAYIEFIDRDNELRXXXXXXXXXXXXXXXXXWTRSRLTRQFAPPKVEK-SDSDL 167
            PMAYIEFIDR+NELR                 W RSRLTRQFAPPK EK  DS+L
Sbjct:  106 PMAYIEFIDRENELRQSKPATPQPPQRVPLDPWERSRLTRQFAPPKEEKIPDSEL 160

The following BLAST results are available for this feature:

BLAST of Pisum_sativum_v1_Contig2505 vs. TrEMBL
BLAST of Pisum_sativum_v1_Contig2505 vs. TAIR peptide

BLAST of Pisum_sativum_v1_Contig2505 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
B7FGX9_MEDTR	8.093e-11	64.91	Putative uncharacterized protein OS=Medicago trunc...	[more]
C6SWX5_SOYBN	5.800e-9	59.26	Putative uncharacterized protein OS=Glycine max PE...	[more]
C6TF54_SOYBN	2.204e-8	57.41	Putative uncharacterized protein OS=Glycine max PE...	[more]
Q8LC38_ARATH	2.879e-8	60.00	50S ribosomal protein L17 OS=Arabidopsis thaliana ...	[more]
Q8GXF2_ARATH	2.879e-8	60.00	Putative 50S ribosomal protein L17 OS=Arabidopsis ...	[more]
Q1ECK2_ARATH	2.879e-8	60.00	At5g64650 OS=Arabidopsis thaliana GN=At5g64650 PE=...	[more]
D7MRW2_ARALY	2.879e-8	60.00	Ribosomal protein L17 family protein OS=Arabidopsi...	[more]
B9H473_POPTR	2.879e-8	62.00	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
D7M271_ARALY	1.094e-7	58.18	Ribosomal protein L17 family protein OS=Arabidopsi...	[more]
Q8LD39_ARATH	1.866e-7	58.18	At5g09770 OS=Arabidopsis thaliana GN=At5g09770 PE=...	[more]

BLAST of Pisum_sativum_v1_Contig2505 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide)
Total hits: 2


Match Name	E-value	Identity	Description
AT5G64650.1	2.362e-10	60.00	\| Symbols: \| Ribosomal protein L17 family protein...	[more]
AT5G09770.1	1.531e-9	58.18	\| Symbols: \| Ribosomal protein L17 family protein...	[more]

InterPro

Analysis Name: InterProScan analysis for Pisum sativum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SEG	seg	seg	coord: 17..33 score

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>Pisum_sativum_v1_Contig2505 ID=Pisum_sativum_v1_Contig2505; Name=Pisum_sativum_v1_Contig2505; organism=Pisum sativum; type=contig; length=481bp
CAGAACCAATGGCCTATATCGAGTTCATTGATCGAGATAATGAGCTTAGG
CAATCAAAGCCACCAACTCCTCAACCACCTCAGAGAGCACCCCTTGATCC
TTGGACGAGATCTCGTCTCACCAGGCAGTTTGCACCTCCCAAAGTGGAAA
AATCTGATTCTGATCTCTGACTCATTCGAATGTATTGCAGAAACTACATG
TTTTTGTCCCCATAGCTTGAGATATCTGATTTTTGGCTTTGCTTATTTTA
TAAATCTCCTCATTGCTTGCAAAAATAAAAAAAATTATTTGCCTACTACA
AAGAAATGTTCTAGAACAAATCATTTCACTGAAACCGCAAACGATAAGGG
AAACGAAAAATCTAAAAGCTCTGTGTGTACTTGATTACATGTTTAACTGA
CAATTACGGACCGTTAAATGGCGAATGTGTAAACAAGACAGGTTGGTTCT
GCTTACTTGCAATATGAGAAGTATATTATTT

Search form

Pisum_sativum_v1_Contig2505