Pisum_sativum_v1_Contig2648

Contig Overview


Name	Pisum_sativum_v1_Contig2648
Unique Name	Pisum_sativum_v1_Contig2648
Type	contig
Organism	Pisum sativum (pea)
Sequence length	386

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
AM162154	EST	AM162154:1..386 -
AJ308188	EST	AJ308188:21..386 +

Unigenes

This contig is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Pisum sativum unigene v1	Pisum sativum unigene v1	contig

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Pisum sativum unigene v1	2010-12-27
Homology Analysis: Pisum sativum unigene v1 vs Trembl	2010-12-28
Homology Analysis: Pisum sativum unigene v1 vs Swissprot	2010-12-28
Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide	2011-02-03
InterProScan analysis for Pisum sativum unigene v1	2010-12-29

Relationships

The following EST feature(s) are a part of this contig:


Feature Name	Unique Name	Species	Type
AM162154	AM162154	Pisum sativum	EST
AJ308188	AJ308188	Pisum sativum	EST

Homology

[Close]

BLAST of Pisum_sativum_v1_Contig2648 vs. SwissProt
Match: RS16_GOSHI (40S ribosomal protein S16 OS=Gossypium hirsutum GN=RPS16 PE=2 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 7.524e-51
Identity = 99/111 (89.19%), Postives = 103/111 (92.79%), Query Frame = 3

Query:   54 MEQVQCFGRKKNAVAVTHCKRGRGLIKINGSPIELVQPDILRFKAFEPILLLGRHRFAGVDMRIRVKGGGHISRIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDR 386
            +E VQCFGRKK AVAVTHCKRGRGLIKING PIELV+P+ILRFKA EPILLLGR RF GVDMRIRVKGGGH S+IYAIRQSIAKALVAFYQKYVDEQSKKEIKDILV YDR
Sbjct:    6 IESVQCFGRKKTAVAVTHCKRGRGLIKINGCPIELVEPEILRFKAVEPILLLGRQRFTGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVGYDR 116

[Close]

BLAST of Pisum_sativum_v1_Contig2648 vs. SwissProt
Match: RS16_FRIAG (40S ribosomal protein S16 OS=Fritillaria agrestis GN=RPS16 PE=2 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 9.827e-51
Identity = 95/110 (86.36%), Postives = 105/110 (95.45%), Query Frame = 3

Query:   57 EQVQCFGRKKNAVAVTHCKRGRGLIKINGSPIELVQPDILRFKAFEPILLLGRHRFAGVDMRIRVKGGGHISRIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDR 386
            E VQCFGRKK AVAVTHCKRGRGLIK+NGSPIELV+P+ILR+KAFEPILLLGRHRF GVDMRIRV+GGG  S+IYAIRQSIAKALVA+YQKYVDEQ+KKE+KDIL+RYDR
Sbjct:    7 ESVQCFGRKKTAVAVTHCKRGRGLIKVNGSPIELVKPEILRYKAFEPILLLGRHRFVGVDMRIRVRGGGKTSQIYAIRQSIAKALVAYYQKYVDEQAKKEVKDILMRYDR 116

[Close]

BLAST of Pisum_sativum_v1_Contig2648 vs. SwissProt
Match: RS161_ARATH (40S ribosomal protein S16-1 OS=Arabidopsis thaliana GN=RPS16A PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 4.877e-50
Identity = 95/110 (86.36%), Postives = 102/110 (92.73%), Query Frame = 3

Query:   57 EQVQCFGRKKNAVAVTHCKRGRGLIKINGSPIELVQPDILRFKAFEPILLLGRHRFAGVDMRIRVKGGGHISRIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDR 386
            E VQCFGRKK AVAVTHCKRG GLIK+NG PIEL QP+ILRFK FEPILLLG+HRFAGV+MRIRV GGGH S++YAIRQSIAKALVA+YQKYVDEQSKKEIKDILVRYDR
Sbjct:    8 ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPILLLGKHRFAGVNMRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDR 117

[Close]

BLAST of Pisum_sativum_v1_Contig2648 vs. SwissProt
Match: RS163_ARATH (40S ribosomal protein S16-3 OS=Arabidopsis thaliana GN=RPS16C PE=2 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 6.370e-50
Identity = 94/110 (85.45%), Postives = 102/110 (92.73%), Query Frame = 3

Query:   57 EQVQCFGRKKNAVAVTHCKRGRGLIKINGSPIELVQPDILRFKAFEPILLLGRHRFAGVDMRIRVKGGGHISRIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDR 386
            E VQCFGRKK AVAVTHCKRG GLIK+NG PIEL QP+ILRFK FEP+LLLG+HRFAGV+MRIRV GGGH S++YAIRQSIAKALVA+YQKYVDEQSKKEIKDILVRYDR
Sbjct:    8 ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKHRFAGVNMRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDR 117

[Close]

BLAST of Pisum_sativum_v1_Contig2648 vs. SwissProt
Match: RS162_ARATH (40S ribosomal protein S16-2 OS=Arabidopsis thaliana GN=RPS16B PE=2 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 2.049e-48
Identity = 91/110 (82.73%), Postives = 101/110 (91.82%), Query Frame = 3

Query:   57 EQVQCFGRKKNAVAVTHCKRGRGLIKINGSPIELVQPDILRFKAFEPILLLGRHRFAGVDMRIRVKGGGHISRIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDR 386
            E VQCFGRKK A AVT+CKRG G+IK+NGSPIEL QP+ILRFK FEP+LLLG+HRFAGVDMRIR  GGG+ SR+YAIRQSIAKALVA+YQKYVDEQSKKEIKDIL+RYDR
Sbjct:    8 ESVQCFGRKKTATAVTYCKRGSGMIKLNGSPIELYQPEILRFKIFEPVLLLGKHRFAGVDMRIRATGGGNTSRVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILMRYDR 117

[Close]

BLAST of Pisum_sativum_v1_Contig2648 vs. SwissProt
Match: RS16_TORRU (40S ribosomal protein S16 OS=Tortula ruralis GN=RPS16 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 2.120e-45
Identity = 88/111 (79.28%), Postives = 104/111 (93.69%), Query Frame = 3

Query:   54 MEQVQCFGRKKNAVAVTHCKRGRGLIKINGSPIELVQPDILRFKAFEPILLLGRHRFAGVDMRIRVKGGGHISRIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDR 386
            +E VQCFGRKK AVAVT+C+RGRGLI++   PIELV+P+ILR+KAFEP+LLLGR +FAGVDMRIRVKGGG+ S+IYAIRQSIAKALVA++QKYVDEQSKKEIKD+L+RYDR
Sbjct:    4 VESVQCFGRKKTAVAVTYCRRGRGLIRLT-VPIELVEPEILRYKAFEPVLLLGRSKFAGVDMRIRVKGGGNTSQIYAIRQSIAKALVAYFQKYVDEQSKKEIKDVLLRYDR 113

[Close]

BLAST of Pisum_sativum_v1_Contig2648 vs. SwissProt
Match: RS16_RAT (40S ribosomal protein S16 OS=Rattus norvegicus GN=Rps16 PE=1 SV=2)

HSP 1 Score: 174.866 bits (442), Expect = 1.163e-43
Identity = 79/114 (69.30%), Postives = 99/114 (86.84%), Query Frame = 3

Query:   45 KSKMEQVQCFGRKKNAVAVTHCKRGRGLIKINGSPIELVQPDILRFKAFEPILLLGRHRFAGVDMRIRVKGGGHISRIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDR 386
            K  ++ VQ FGRKK A AV HCKRG GLIK+NG P+E+++P  L++K  EP+LLLG+ RFAGVD+R+RVKGGGH+++IYAIRQSI+KALVA+YQKYVDE SKKEIKDIL++YDR
Sbjct:    4 KGPLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDR 117

[Close]

BLAST of Pisum_sativum_v1_Contig2648 vs. SwissProt
Match: RS16_PIG (40S ribosomal protein S16 OS=Sus scrofa GN=RPS16 PE=2 SV=4)

HSP 1 Score: 174.866 bits (442), Expect = 1.163e-43
Identity = 79/114 (69.30%), Postives = 99/114 (86.84%), Query Frame = 3

Query:   45 KSKMEQVQCFGRKKNAVAVTHCKRGRGLIKINGSPIELVQPDILRFKAFEPILLLGRHRFAGVDMRIRVKGGGHISRIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDR 386
            K  ++ VQ FGRKK A AV HCKRG GLIK+NG P+E+++P  L++K  EP+LLLG+ RFAGVD+R+RVKGGGH+++IYAIRQSI+KALVA+YQKYVDE SKKEIKDIL++YDR
Sbjct:    4 KGPLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDR 117

[Close]

BLAST of Pisum_sativum_v1_Contig2648 vs. SwissProt
Match: RS16_MOUSE (40S ribosomal protein S16 OS=Mus musculus GN=Rps16 PE=2 SV=4)

HSP 1 Score: 174.866 bits (442), Expect = 1.163e-43
Identity = 79/114 (69.30%), Postives = 99/114 (86.84%), Query Frame = 3

Query:   45 KSKMEQVQCFGRKKNAVAVTHCKRGRGLIKINGSPIELVQPDILRFKAFEPILLLGRHRFAGVDMRIRVKGGGHISRIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDR 386
            K  ++ VQ FGRKK A AV HCKRG GLIK+NG P+E+++P  L++K  EP+LLLG+ RFAGVD+R+RVKGGGH+++IYAIRQSI+KALVA+YQKYVDE SKKEIKDIL++YDR
Sbjct:    4 KGPLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDR 117

[Close]

BLAST of Pisum_sativum_v1_Contig2648 vs. SwissProt
Match: RS16_HUMAN (40S ribosomal protein S16 OS=Homo sapiens GN=RPS16 PE=1 SV=2)

HSP 1 Score: 174.866 bits (442), Expect = 1.163e-43
Identity = 79/114 (69.30%), Postives = 99/114 (86.84%), Query Frame = 3

Query:   45 KSKMEQVQCFGRKKNAVAVTHCKRGRGLIKINGSPIELVQPDILRFKAFEPILLLGRHRFAGVDMRIRVKGGGHISRIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDR 386
            K  ++ VQ FGRKK A AV HCKRG GLIK+NG P+E+++P  L++K  EP+LLLG+ RFAGVD+R+RVKGGGH+++IYAIRQSI+KALVA+YQKYVDE SKKEIKDIL++YDR
Sbjct:    4 KGPLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDR 117

[Close]

BLAST of Pisum_sativum_v1_Contig2648 vs. TrEMBL
Match: B7FMP2_MEDTR (Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 3.904e-53
Identity = 103/111 (92.79%), Postives = 108/111 (97.30%), Query Frame = 3

Query:   54 MEQVQCFGRKKNAVAVTHCKRGRGLIKINGSPIELVQPDILRFKAFEPILLLGRHRFAGVDMRIRVKGGGHISRIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDR 386
            MEQVQCFGRKKNAVAVTHCKRGRGLIKING PIELV+P+ILRFKA+EPILLLGRHRFAGVDMRIR KGGGH S+IYAIRQSIAKALVA+YQKYVDEQSKKEIKDILVRYDR
Sbjct:    1 MEQVQCFGRKKNAVAVTHCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRAKGGGHTSQIYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDR 111

[Close]

BLAST of Pisum_sativum_v1_Contig2648 vs. TrEMBL
Match: A9P8S1_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_815673 PE=2 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.136e-52
Identity = 103/110 (93.64%), Postives = 107/110 (97.27%), Query Frame = 3

Query:   57 EQVQCFGRKKNAVAVTHCKRGRGLIKINGSPIELVQPDILRFKAFEPILLLGRHRFAGVDMRIRVKGGGHISRIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDR 386
            E VQCFGRKK AVAVTHCKRGRGLIKINGSPIELV+P+ILRFKA+EPILLLGRHRFAGVDMRIRVKGGGH S+IYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDR
Sbjct:    8 ESVQCFGRKKTAVAVTHCKRGRGLIKINGSPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDR 117

[Close]

BLAST of Pisum_sativum_v1_Contig2648 vs. TrEMBL
Match: B7FLC1_MEDTR (Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 1.937e-52
Identity = 102/111 (91.89%), Postives = 108/111 (97.30%), Query Frame = 3

Query:   54 MEQVQCFGRKKNAVAVTHCKRGRGLIKINGSPIELVQPDILRFKAFEPILLLGRHRFAGVDMRIRVKGGGHISRIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDR 386
            MEQVQCFGRKKNAVAVTHCKRGRGLIKING PIELV+P+ILRFKA+EPILL GRHRF+GVDMRIRVKGGGH S+IYAIRQSIAKALVA+YQKYVDEQSKKEIKDILVRYDR
Sbjct:    1 MEQVQCFGRKKNAVAVTHCKRGRGLIKINGCPIELVEPEILRFKAYEPILLHGRHRFSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDR 111

[Close]

BLAST of Pisum_sativum_v1_Contig2648 vs. TrEMBL
Match: C6T5U0_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 3.305e-52
Identity = 103/117 (88.03%), Postives = 110/117 (94.02%), Query Frame = 3

Query:   36 GG*KSKMEQVQCFGRKKNAVAVTHCKRGRGLIKINGSPIELVQPDILRFKAFEPILLLGRHRFAGVDMRIRVKGGGHISRIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDR 386
            G   + +EQVQCFGRKK AVAVT+CKRGRGLIKING PIELV+P+ILRFKAFEPILLLGRHRFAGVDMRIRVKGGGH S+IYAIRQSIAKALVA+YQKYVDEQSKKEIKDILVRYDR
Sbjct:   12 GAAPAAIEQVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDR 128

[Close]

BLAST of Pisum_sativum_v1_Contig2648 vs. TrEMBL
Match: B9RYF4_RICCO (Ribosomal protein S9, putative OS=Ricinus communis GN=RCOM_0812680 PE=3 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 3.305e-52
Identity = 102/113 (90.27%), Postives = 108/113 (95.58%), Query Frame = 3

Query:   48 SKMEQVQCFGRKKNAVAVTHCKRGRGLIKINGSPIELVQPDILRFKAFEPILLLGRHRFAGVDMRIRVKGGGHISRIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDR 386
            S+ E VQCFGRKK AVAVTHCKRGRGLIKING PIELV+P+ILRFKA+EPILLLGRHRFAGVDMRIRVKGGGH S+IYAIRQSIAKALVA+YQKYVDEQSKKEIKDILVRYDR
Sbjct:   10 SQTESVQCFGRKKTAVAVTHCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDR 122

[Close]

BLAST of Pisum_sativum_v1_Contig2648 vs. TrEMBL
Match: B7FL97_MEDTR (Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 1.640e-51
Identity = 99/112 (88.39%), Postives = 110/112 (98.21%), Query Frame = 3

Query:   51 KMEQVQCFGRKKNAVAVTHCKRGRGLIKINGSPIELVQPDILRFKAFEPILLLGRHRFAGVDMRIRVKGGGHISRIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDR 386
            K+EQVQCFGRKKNAVAVT+CKRGRGLIKING+PIELV+P+ILRFKAFEPILLLG+HRFAGVDMRIRV GGGH ++IYAIRQSIA+ALVA+YQKYVDE+SKKEIKDILVRYDR
Sbjct:    3 KLEQVQCFGRKKNAVAVTYCKRGRGLIKINGAPIELVEPEILRFKAFEPILLLGKHRFAGVDMRIRVNGGGHTAQIYAIRQSIAEALVAYYQKYVDERSKKEIKDILVRYDR 114

[Close]

BLAST of Pisum_sativum_v1_Contig2648 vs. TrEMBL
Match: Q9M5L1_EUPES (40S ribosomal protein S16 (Fragment) OS=Euphorbia esula PE=2 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 2.797e-51
Identity = 100/110 (90.91%), Postives = 106/110 (96.36%), Query Frame = 3

Query:   57 EQVQCFGRKKNAVAVTHCKRGRGLIKINGSPIELVQPDILRFKAFEPILLLGRHRFAGVDMRIRVKGGGHISRIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDR 386
            E VQCFGRKK AVAVTHCKRGRGLIKING PIELV+P+ILRFKA+EPILLLGRHRFAGVDMRIRVKGGGH S+IYAIRQSIAKALVA+YQK+VDEQSKKEIKDILVRYDR
Sbjct:    6 ESVQCFGRKKTAVAVTHCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAYYQKFVDEQSKKEIKDILVRYDR 115

[Close]

BLAST of Pisum_sativum_v1_Contig2648 vs. TrEMBL
Match: A9P9A0_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_820750 PE=2 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 3.654e-51
Identity = 101/110 (91.82%), Postives = 105/110 (95.45%), Query Frame = 3

Query:   57 EQVQCFGRKKNAVAVTHCKRGRGLIKINGSPIELVQPDILRFKAFEPILLLGRHRFAGVDMRIRVKGGGHISRIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDR 386
            E VQCFGRKK AVAVTHCKRGRGLIKING PIELV+P+ILRFKA+EPILLLGR RFAGVDMRIRVKGGGH S+IYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDR
Sbjct:    6 ESVQCFGRKKTAVAVTHCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRQRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDR 115

[Close]

BLAST of Pisum_sativum_v1_Contig2648 vs. TrEMBL
Match: A9P8I2_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_821994 PE=2 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 3.654e-51
Identity = 101/110 (91.82%), Postives = 105/110 (95.45%), Query Frame = 3

Query:   57 EQVQCFGRKKNAVAVTHCKRGRGLIKINGSPIELVQPDILRFKAFEPILLLGRHRFAGVDMRIRVKGGGHISRIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDR 386
            E VQCFGRKK AVAVTHCKRGRGLIKING PIELV+P+ILRFKA+EPILLLGR RFAGVDMRIRVKGGGH S+IYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDR
Sbjct:    6 ESVQCFGRKKTAVAVTHCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRQRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDR 115

[Close]

BLAST of Pisum_sativum_v1_Contig2648 vs. TrEMBL
Match: A9NK32_PICSI (Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 4.772e-51
Identity = 99/111 (89.19%), Postives = 107/111 (96.40%), Query Frame = 3

Query:   54 MEQVQCFGRKKNAVAVTHCKRGRGLIKINGSPIELVQPDILRFKAFEPILLLGRHRFAGVDMRIRVKGGGHISRIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDR 386
            ++ VQCFGRKK AVAVT+CKRGRGLIKING PIEL++P+ILR+KAFEPILLLGRHRFAGVDMRIRVKGGGH S+IYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDR
Sbjct:    4 VDSVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELIEPEILRYKAFEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDR 114

[Close]

BLAST of Pisum_sativum_v1_Contig2648 vs. TAIR peptide
Match: AT2G09990.1 (| Symbols: | Ribosomal protein S5 domain 2-like superfamily protein | chr2:3781442-3781882 FORWARD LENGTH=146)

HSP 1 Score: 196.052 bits (497), Expect = 4.851e-51
Identity = 95/110 (86.36%), Postives = 102/110 (92.73%), Query Frame = 3

Query:   57 EQVQCFGRKKNAVAVTHCKRGRGLIKINGSPIELVQPDILRFKAFEPILLLGRHRFAGVDMRIRVKGGGHISRIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDR 386
            E VQCFGRKK AVAVTHCKRG GLIK+NG PIEL QP+ILRFK FEPILLLG+HRFAGV+MRIRV GGGH S++YAIRQSIAKALVA+YQKYVDEQSKKEIKDILVRYDR
Sbjct:    8 ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPILLLGKHRFAGVNMRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDR 117

[Close]

BLAST of Pisum_sativum_v1_Contig2648 vs. TAIR peptide
Match: AT5G18380.2 (| Symbols: | Ribosomal protein S5 domain 2-like superfamily protein | chr5:6090128-6090693 REVERSE LENGTH=144)

HSP 1 Score: 195.667 bits (496), Expect = 6.336e-51
Identity = 94/110 (85.45%), Postives = 102/110 (92.73%), Query Frame = 3

Query:   57 EQVQCFGRKKNAVAVTHCKRGRGLIKINGSPIELVQPDILRFKAFEPILLLGRHRFAGVDMRIRVKGGGHISRIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDR 386
            E VQCFGRKK AVAVTHCKRG GLIK+NG PIEL QP+ILRFK FEP+LLLG+HRFAGV+MRIRV GGGH S++YAIRQSIAKALVA+YQKYVDEQSKKEIKDILVRYDR
Sbjct:    8 ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKHRFAGVNMRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDR 117

[Close]

BLAST of Pisum_sativum_v1_Contig2648 vs. TAIR peptide
Match: AT5G18380.1 (| Symbols: | Ribosomal protein S5 domain 2-like superfamily protein | chr5:6090253-6090693 REVERSE LENGTH=146)

HSP 1 Score: 195.667 bits (496), Expect = 6.336e-51
Identity = 94/110 (85.45%), Postives = 102/110 (92.73%), Query Frame = 3

Query:   57 EQVQCFGRKKNAVAVTHCKRGRGLIKINGSPIELVQPDILRFKAFEPILLLGRHRFAGVDMRIRVKGGGHISRIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDR 386
            E VQCFGRKK AVAVTHCKRG GLIK+NG PIEL QP+ILRFK FEP+LLLG+HRFAGV+MRIRV GGGH S++YAIRQSIAKALVA+YQKYVDEQSKKEIKDILVRYDR
Sbjct:    8 ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKHRFAGVNMRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDR 117

[Close]

BLAST of Pisum_sativum_v1_Contig2648 vs. TAIR peptide
Match: AT3G04230.1 (| Symbols: | Ribosomal protein S5 domain 2-like superfamily protein | chr3:1113169-1113609 REVERSE LENGTH=146)

HSP 1 Score: 190.66 bits (483), Expect = 2.038e-49
Identity = 91/110 (82.73%), Postives = 101/110 (91.82%), Query Frame = 3

Query:   57 EQVQCFGRKKNAVAVTHCKRGRGLIKINGSPIELVQPDILRFKAFEPILLLGRHRFAGVDMRIRVKGGGHISRIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDR 386
            E VQCFGRKK A AVT+CKRG G+IK+NGSPIEL QP+ILRFK FEP+LLLG+HRFAGVDMRIR  GGG+ SR+YAIRQSIAKALVA+YQKYVDEQSKKEIKDIL+RYDR
Sbjct:    8 ESVQCFGRKKTATAVTYCKRGSGMIKLNGSPIELYQPEILRFKIFEPVLLLGKHRFAGVDMRIRATGGGNTSRVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILMRYDR 117

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BLAST of Pisum_sativum_v1_Contig2648 vs. TAIR peptide
Match: AT5G18380.3 (| Symbols: | Ribosomal protein S5 domain 2-like superfamily protein | chr5:6090128-6090693 REVERSE LENGTH=139)

HSP 1 Score: 189.889 bits (481), Expect = 3.477e-49
Identity = 91/108 (84.26%), Postives = 100/108 (92.59%), Query Frame = 3

Query:   57 EQVQCFGRKKNAVAVTHCKRGRGLIKINGSPIELVQPDILRFKAFEPILLLGRHRFAGVDMRIRVKGGGHISRIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRY 380
            E VQCFGRKK AVAVTHCKRG GLIK+NG PIEL QP+ILRFK FEP+LLLG+HRFAGV+MRIRV GGGH S++YAIRQSIAKALVA+YQKYVDEQSKKEIKDILVR+
Sbjct:    8 ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKHRFAGVNMRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRF 115

The following BLAST results are available for this feature:

BLAST of Pisum_sativum_v1_Contig2648 vs. SwissProt
BLAST of Pisum_sativum_v1_Contig2648 vs. TrEMBL
BLAST of Pisum_sativum_v1_Contig2648 vs. TAIR peptide

BLAST of Pisum_sativum_v1_Contig2648 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Swissprot)
Total hits: 10


Match Name	E-value	Identity	Description
RS16_GOSHI	7.524e-51	89.19	40S ribosomal protein S16 OS=Gossypium hirsutum GN...	[more]
RS16_FRIAG	9.827e-51	86.36	40S ribosomal protein S16 OS=Fritillaria agrestis ...	[more]
RS161_ARATH	4.877e-50	86.36	40S ribosomal protein S16-1 OS=Arabidopsis thalian...	[more]
RS163_ARATH	6.370e-50	85.45	40S ribosomal protein S16-3 OS=Arabidopsis thalian...	[more]
RS162_ARATH	2.049e-48	82.73	40S ribosomal protein S16-2 OS=Arabidopsis thalian...	[more]
RS16_TORRU	2.120e-45	79.28	40S ribosomal protein S16 OS=Tortula ruralis GN=RP...	[more]
RS16_RAT	1.163e-43	69.30	40S ribosomal protein S16 OS=Rattus norvegicus GN=...	[more]
RS16_PIG	1.163e-43	69.30	40S ribosomal protein S16 OS=Sus scrofa GN=RPS16 P...	[more]
RS16_MOUSE	1.163e-43	69.30	40S ribosomal protein S16 OS=Mus musculus GN=Rps16...	[more]
RS16_HUMAN	1.163e-43	69.30	40S ribosomal protein S16 OS=Homo sapiens GN=RPS16...	[more]

BLAST of Pisum_sativum_v1_Contig2648 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
B7FMP2_MEDTR	3.904e-53	92.79	Putative uncharacterized protein OS=Medicago trunc...	[more]
A9P8S1_POPTR	1.136e-52	93.64	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
B7FLC1_MEDTR	1.937e-52	91.89	Putative uncharacterized protein OS=Medicago trunc...	[more]
C6T5U0_SOYBN	3.305e-52	88.03	Putative uncharacterized protein OS=Glycine max PE...	[more]
B9RYF4_RICCO	3.305e-52	90.27	Ribosomal protein S9, putative OS=Ricinus communis...	[more]
B7FL97_MEDTR	1.640e-51	88.39	Putative uncharacterized protein OS=Medicago trunc...	[more]
Q9M5L1_EUPES	2.797e-51	90.91	40S ribosomal protein S16 (Fragment) OS=Euphorbia ...	[more]
A9P9A0_POPTR	3.654e-51	91.82	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
A9P8I2_POPTR	3.654e-51	91.82	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
A9NK32_PICSI	4.772e-51	89.19	Putative uncharacterized protein OS=Picea sitchens...	[more]

BLAST of Pisum_sativum_v1_Contig2648 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide)
Total hits: 5


Match Name	E-value	Identity	Description
AT2G09990.1	4.851e-51	86.36	\| Symbols: \| Ribosomal protein S5 domain 2-like s...	[more]
AT5G18380.2	6.336e-51	85.45	\| Symbols: \| Ribosomal protein S5 domain 2-like s...	[more]
AT5G18380.1	6.336e-51	85.45	\| Symbols: \| Ribosomal protein S5 domain 2-like s...	[more]
AT3G04230.1	2.038e-49	82.73	\| Symbols: \| Ribosomal protein S5 domain 2-like s...	[more]
AT5G18380.3	3.477e-49	84.26	\| Symbols: \| Ribosomal protein S5 domain 2-like s...	[more]

InterPro

Analysis Name: InterProScan analysis for Pisum sativum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000754	Ribosomal protein S9	PANTHER	PTHR21569	RIBOSOMAL PROTEIN S9	coord: 3..114 score: 4.4
IPR000754	Ribosomal protein S9	PFAM	PF00380	Ribosomal_S9	coord: 11..106 score: 7.4
IPR014721	Ribosomal protein S5 domain 2-type fold, subgroup	GENE3D	3.30.230.10	no description	coord: 7..104 score: 4.7
IPR020568	Ribosomal protein S5 domain 2-type fold	SUPERFAMILY	54211	Ribosomal protein S5 domain 2-like	coord: 5..105 score: 1.7
None	No IPR available	SEG	seg	seg	coord: 8..22 score

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>Pisum_sativum_v1_Contig2648 ID=Pisum_sativum_v1_Contig2648; Name=Pisum_sativum_v1_Contig2648; organism=Pisum sativum; type=contig; length=386bp
GAAACCATAACCCTAGCTGCTATCACTTTTTCTGCGGCGGCTGAAAGAGC
AAAATGGAACAGGTTCAATGCTTCGGTAGGAAGAAAAACGCCGTCGCGGT
GACTCACTGCAAGAGAGGCCGCGGTCTCATCAAGATCAACGGCTCTCCGA
TCGAACTCGTCCAGCCTGACATTCTCCGTTTCAAGGCATTCGAGCCAATT
CTCCTTCTCGGAAGACACCGTTTCGCCGGCGTTGATATGAGGATCAGAGT
GAAGGGAGGAGGTCACATATCTCGGATCTATGCTATCAGGCAGAGTATCG
CGAAGGCGTTGGTGGCTTTCTATCAGAAGTATGTCGATGAACAGAGTAAG
AAGGAGATCAAGGATATTCTTGTTCGATATGATCGT

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular anatomical structure
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **INTERPRO**
Term	Definition
IPR000754	Ribosomal_uS9
IPR014721	Ribsml_uS5_D2-typ_fold_subgr
IPR020568	Ribosomal_Su5_D2-typ_SF

Search form

Pisum_sativum_v1_Contig2648