Pisum_sativum_v1_Contig2661

Contig Overview
NamePisum_sativum_v1_Contig2661
Unique NamePisum_sativum_v1_Contig2661
Typecontig
OrganismPisum sativum (pea)
Sequence length675
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
AM162005ESTAM162005:1..249 +Pisum sativum unigene v1n/a
FG532783ESTFG532783:19..345 +Pisum sativum unigene v1n/a
EX570126ESTEX570126:26..675 +Pisum sativum unigene v1n/a
Unigenes
This contig is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Pisum sativum unigene v1Pisum sativum unigene v1contig
Analyses
This contig is derived from or has results from the following analyses
Analysis NameDate Performed
Pisum sativum unigene v12010-12-27
Homology Analysis: Pisum sativum unigene v1 vs Trembl2010-12-28
Homology Analysis: Pisum sativum unigene v1 vs Swissprot2010-12-28
Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide2011-02-03
InterProScan analysis for Pisum sativum unigene v12010-12-29
Relationships

The following EST feature(s) are a part of this contig:

Feature NameUnique NameSpeciesType
AM162005AM162005Pisum sativumEST
FG532783FG532783Pisum sativumEST
EX570126EX570126Pisum sativumEST


Homology
[Close]
BLAST of Pisum_sativum_v1_Contig2661 vs. SwissProt
Match: SKP2A_ARATH (F-box protein SKP2A OS=Arabidopsis thaliana GN=SKP2A PE=1 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 5.815e-38
Identity = 75/104 (72.12%), Postives = 87/104 (83.65%), Query Frame = 3 
Query:    3 FCKNITDNAMYSLAQSKVKNR--MWEAVKGGN-EEDGLRNLNISQCTSLTPSAVQAVCDSSPALHTCSGRHSLIMSGCLNLTSVHCACAIHAHRGIKTFPHTAH 305
            +C+NITD AMYSLAQS VKN+   W++VK G  +E+GLR+LNISQCT+LTPSAVQAVCDS PALHTCSGRHSL+MSGCLNLT+VHCAC + AHR     PH AH
Sbjct:  257 YCRNITDRAMYSLAQSGVKNKPGSWKSVKKGKYDEEGLRSLNISQCTALTPSAVQAVCDSFPALHTCSGRHSLVMSGCLNLTTVHCACILQAHRAHNAVPHPAH 360
[Close]
BLAST of Pisum_sativum_v1_Contig2661 vs. SwissProt
Match: FBL5_ARATH (F-box/LRR-repeat protein 5 OS=Arabidopsis thaliana GN=FBL5 PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 5.815e-38
Identity = 76/104 (73.08%), Postives = 86/104 (82.69%), Query Frame = 3 
Query:    3 FCKNITDNAMYSLAQSKVKNR--MWEAVKGGN-EEDGLRNLNISQCTSLTPSAVQAVCDSSPALHTCSGRHSLIMSGCLNLTSVHCACAIHAHRGIKTFPHTAH 305
            +C+NITD AMYSLAQS VKN+  MW AVK G  +E+GLR+LNISQCT LTPSAVQAVCD+ PALHTCSGRHSL+MSGCLNL SVHCAC + AHR    +PH AH
Sbjct:  257 YCRNITDRAMYSLAQSGVKNKHEMWRAVKKGKFDEEGLRSLNISQCTYLTPSAVQAVCDTFPALHTCSGRHSLVMSGCLNLQSVHCACILQAHRTHTVYPHPAH 360
[Close]
BLAST of Pisum_sativum_v1_Contig2661 vs. TrEMBL
Match: B7FL57_MEDTR (Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 1.077e-47
Identity = 90/101 (89.11%), Postives = 93/101 (92.08%), Query Frame = 3 
Query:    3 FCKNITDNAMYSLAQSKVKNRMWEAVKGGNEEDGLRNLNISQCTSLTPSAVQAVCDSSPALHTCSGRHSLIMSGCLNLTSVHCACAIHAHRGIKTFPHTAH 305
            FCKNITDNAMYSLAQSKVKNRMW +VKGGN+EDGLR LNISQCTSLTPSAVQAVCDSSPALHTCSGRHSLIMSGCLNLT VHCACA HAHR +  FPH AH
Sbjct:  268 FCKNITDNAMYSLAQSKVKNRMWGSVKGGNDEDGLRTLNISQCTSLTPSAVQAVCDSSPALHTCSGRHSLIMSGCLNLTEVHCACAGHAHRAMNAFPHPAH 368
[Close]
BLAST of Pisum_sativum_v1_Contig2661 vs. TrEMBL
Match: B7FJG1_MEDTR (Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 1.077e-47
Identity = 90/101 (89.11%), Postives = 93/101 (92.08%), Query Frame = 3 
Query:    3 FCKNITDNAMYSLAQSKVKNRMWEAVKGGNEEDGLRNLNISQCTSLTPSAVQAVCDSSPALHTCSGRHSLIMSGCLNLTSVHCACAIHAHRGIKTFPHTAH 305
            FCKNITDNAMYSLAQSKVKNRMW +VKGGN+EDGLR LNISQCTSLTPSAVQAVCDSSPALHTCSGRHSLIMSGCLNLT VHCACA HAHR +  FPH AH
Sbjct:  268 FCKNITDNAMYSLAQSKVKNRMWGSVKGGNDEDGLRTLNISQCTSLTPSAVQAVCDSSPALHTCSGRHSLIMSGCLNLTEVHCACAGHAHRAMNAFPHPAH 368
[Close]
BLAST of Pisum_sativum_v1_Contig2661 vs. TrEMBL
Match: C6TJ50_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 3.141e-39
Identity = 79/102 (77.45%), Postives = 89/102 (87.25%), Query Frame = 3 
Query:    3 FCKNITDNAMYSLAQSKVKNRMWEAVKGG-NEEDGLRNLNISQCTSLTPSAVQAVCDSSPALHTCSGRHSLIMSGCLNLTSVHCACAIHAHRGIKTFPHTAH 305
            +C++ITD AMYSLAQSK+ NR+W +VKGG N++DGLR LNISQCT+LTPSAVQAVCDS P+LHTCSGRHSLIMSGCLNLTSVHC CA  AHR I T PH AH
Sbjct:  271 YCQSITDKAMYSLAQSKLNNRVWGSVKGGGNDDDGLRTLNISQCTALTPSAVQAVCDSCPSLHTCSGRHSLIMSGCLNLTSVHCVCAGQAHRAI-TLPHAAH 371
[Close]
BLAST of Pisum_sativum_v1_Contig2661 vs. TrEMBL
Match: B9H7L8_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_818560 PE=4 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 1.010e-37
Identity = 72/103 (69.90%), Postives = 86/103 (83.50%), Query Frame = 3 
Query:    3 FCKNITDNAMYSLAQSKVKNR--MWEAVKGGNEEDGLRNLNISQCTSLTPSAVQAVCDSSPALHTCSGRHSLIMSGCLNLTSVHCACAIHAHRGIKTFPHTAH 305
            +C+NITD AMYSL  ++VKN+  MWE++KG  +E+GL  LNISQCT+LTP AVQA+CDS PALHTCSGRHSL+MSGCLNLTSVHC CA+ AHR   +FPH AH
Sbjct:  261 YCRNITDRAMYSLVHNRVKNKLSMWESMKGRCDEEGLSRLNISQCTALTPPAVQALCDSFPALHTCSGRHSLVMSGCLNLTSVHCVCAVQAHRSASSFPHPAH 363
[Close]
BLAST of Pisum_sativum_v1_Contig2661 vs. TrEMBL
Match: B9S2N9_RICCO (F-box/LRR-repeat protein, putative OS=Ricinus communis GN=RCOM_0559620 PE=4 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 2.251e-37
Identity = 73/103 (70.87%), Postives = 87/103 (84.47%), Query Frame = 3 
Query:    3 FCKNITDNAMYSLAQSKVKNR--MWEAVKGGNEEDGLRNLNISQCTSLTPSAVQAVCDSSPALHTCSGRHSLIMSGCLNLTSVHCACAIHAHRGIKTFPHTAH 305
            +C+NITD AMYSL  S+VKN+  MWE+VKG  +E+GLR+LNISQCT+LTP AVQA+CD  PALHTCSGRHSL+MSGCLNLTSVHCACA+ AHR  +  P+ AH
Sbjct:  271 YCRNITDRAMYSLVHSRVKNKPAMWESVKGRCDEEGLRSLNISQCTALTPPAVQALCDCFPALHTCSGRHSLVMSGCLNLTSVHCACAVQAHRTFRFIPNPAH 373
[Close]
BLAST of Pisum_sativum_v1_Contig2661 vs. TrEMBL
Match: D7KK09_ARALY (F-box family protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_472378 PE=4 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 8.553e-37
Identity = 75/104 (72.12%), Postives = 87/104 (83.65%), Query Frame = 3 
Query:    3 FCKNITDNAMYSLAQSKVKNR--MWEAVKGGN-EEDGLRNLNISQCTSLTPSAVQAVCDSSPALHTCSGRHSLIMSGCLNLTSVHCACAIHAHRGIKTFPHTAH 305
            +C+NITD AMYSLAQS VKN+   W++VK G  +E+GLR+LNISQCT+LTPSAVQAVCDS PALHTCSGRHSL+MSGCLNLT+VHCAC + AHR     PH AH
Sbjct:  258 YCRNITDRAMYSLAQSGVKNKPGSWKSVKKGKYDEEGLRSLNISQCTALTPSAVQAVCDSFPALHTCSGRHSLVMSGCLNLTTVHCACILQAHRAHNAVPHPAH 361
[Close]
BLAST of Pisum_sativum_v1_Contig2661 vs. TrEMBL
Match: B9GTP8_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_830163 PE=4 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.488e-36
Identity = 69/103 (66.99%), Postives = 86/103 (83.50%), Query Frame = 3 
Query:    3 FCKNITDNAMYSLAQSKVKNR--MWEAVKGGNEEDGLRNLNISQCTSLTPSAVQAVCDSSPALHTCSGRHSLIMSGCLNLTSVHCACAIHAHRGIKTFPHTAH 305
            +C+NITD AMYSL  ++VKN+  MWE++KG  +E+GL++LNISQCT++TP AVQA+CDS PALHTCSGRHSL+MSGC NLTSVHCACA+ AH    + PH AH
Sbjct:  256 YCRNITDRAMYSLVHNRVKNKPAMWESMKGRYDEEGLKSLNISQCTAITPPAVQALCDSFPALHTCSGRHSLVMSGCWNLTSVHCACAVQAHHTASSIPHPAH 358
[Close]
BLAST of Pisum_sativum_v1_Contig2661 vs. TrEMBL
Match: D7KTZ3_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_476863 PE=4 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 3.250e-36
Identity = 77/107 (71.96%), Postives = 87/107 (81.31%), Query Frame = 3 
Query:    3 FCKNITDNAMYSLAQSKVKNR--MWEAVKGGN-EEDGLRNLNISQCTSLTPSAVQAVCDSSPALHTCSGRHSLIMSGCLNLTSVHCACAIHAHRGIKT---FPHTAH 305
            +C+NITD AMYSLAQS VKN+  MW  VK G  +E+GLR+LNISQCT LTPSAVQAVCD+ PALHTCSGRHSL+MSGCLNL SVHCAC + AHR  +T   FPH AH
Sbjct:  257 YCRNITDRAMYSLAQSGVKNKHEMWRTVKKGKFDEEGLRSLNISQCTYLTPSAVQAVCDTFPALHTCSGRHSLVMSGCLNLQSVHCACILQAHRAHRTHTAFPHPAH 363
[Close]
BLAST of Pisum_sativum_v1_Contig2661 vs. TrEMBL
Match: Q60EC4_ORYSJ (Os05g0425700 protein OS=Oryza sativa subsp. japonica GN=OSJNBa0044P19.3 PE=4 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.575e-33
Identity = 70/99 (70.71%), Postives = 83/99 (83.84%), Query Frame = 3 
Query:    3 FCKNITDNAMYSLAQSKVKN--RMWEAVKGGN--EEDGLRNLNISQCTSLTPSAVQAVCDSSPALHTCSGRHSLIMSGCLNLTSVHCACAIHAHRGIKT 287
            +C+NITD AMYSLA S+VK+  R W++V+  +  EEDGL NLNISQCT+LTP AVQAVCDS PALHTC GRHSLI+SGCL+LTSVHCACA+H HR  +T
Sbjct:  271 YCQNITDRAMYSLANSRVKSKRRRWDSVRSSSSKEEDGLANLNISQCTALTPPAVQAVCDSFPALHTCPGRHSLIISGCLSLTSVHCACALHPHRAGRT 369
[Close]
BLAST of Pisum_sativum_v1_Contig2661 vs. TrEMBL
Match: A2Y4V4_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_20030 PE=4 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.575e-33
Identity = 70/99 (70.71%), Postives = 83/99 (83.84%), Query Frame = 3 
Query:    3 FCKNITDNAMYSLAQSKVKN--RMWEAVKGGN--EEDGLRNLNISQCTSLTPSAVQAVCDSSPALHTCSGRHSLIMSGCLNLTSVHCACAIHAHRGIKT 287
            +C+NITD AMYSLA S+VK+  R W++V+  +  EEDGL NLNISQCT+LTP AVQAVCDS PALHTC GRHSLI+SGCL+LTSVHCACA+H HR  +T
Sbjct:  271 YCQNITDRAMYSLANSRVKSKRRRWDSVRSSSSKEEDGLANLNISQCTALTPPAVQAVCDSFPALHTCPGRHSLIISGCLSLTSVHCACALHPHRAGRT 369
[Close]
BLAST of Pisum_sativum_v1_Contig2661 vs. TAIR peptide
Match: AT1G77000.2 (| Symbols: SKP2B | RNI-like superfamily protein | chr1:28940888-28942401 FORWARD LENGTH=360)

HSP 1 Score: 157.532 bits (397), Expect = 5.901e-39
Identity = 76/104 (73.08%), Postives = 86/104 (82.69%), Query Frame = 3 
Query:    3 FCKNITDNAMYSLAQSKVKNR--MWEAVKGGN-EEDGLRNLNISQCTSLTPSAVQAVCDSSPALHTCSGRHSLIMSGCLNLTSVHCACAIHAHRGIKTFPHTAH 305
            +C+NITD AMYSLAQS VKN+  MW AVK G  +E+GLR+LNISQCT LTPSAVQAVCD+ PALHTCSGRHSL+MSGCLNL SVHCAC + AHR    +PH AH
Sbjct:  257 YCRNITDRAMYSLAQSGVKNKHEMWRAVKKGKFDEEGLRSLNISQCTYLTPSAVQAVCDTFPALHTCSGRHSLVMSGCLNLQSVHCACILQAHRTHTVYPHPAH 360
[Close]
BLAST of Pisum_sativum_v1_Contig2661 vs. TAIR peptide
Match: AT1G21410.1 (| Symbols: SKP2A | F-box/RNI-like superfamily protein | chr1:7497479-7499386 FORWARD LENGTH=360)

HSP 1 Score: 157.532 bits (397), Expect = 5.901e-39
Identity = 75/104 (72.12%), Postives = 87/104 (83.65%), Query Frame = 3 
Query:    3 FCKNITDNAMYSLAQSKVKNR--MWEAVKGGN-EEDGLRNLNISQCTSLTPSAVQAVCDSSPALHTCSGRHSLIMSGCLNLTSVHCACAIHAHRGIKTFPHTAH 305
            +C+NITD AMYSLAQS VKN+   W++VK G  +E+GLR+LNISQCT+LTPSAVQAVCDS PALHTCSGRHSL+MSGCLNLT+VHCAC + AHR     PH AH
Sbjct:  257 YCRNITDRAMYSLAQSGVKNKPGSWKSVKKGKYDEEGLRSLNISQCTALTPSAVQAVCDSFPALHTCSGRHSLVMSGCLNLTTVHCACILQAHRAHNAVPHPAH 360
[Close]
BLAST of Pisum_sativum_v1_Contig2661 vs. TAIR peptide
Match: AT1G77000.1 (| Symbols: ATSKP2;2, SKP2B | RNI-like superfamily protein | chr1:28940888-28942401 FORWARD LENGTH=360)

HSP 1 Score: 157.532 bits (397), Expect = 5.901e-39
Identity = 76/104 (73.08%), Postives = 86/104 (82.69%), Query Frame = 3 
Query:    3 FCKNITDNAMYSLAQSKVKNR--MWEAVKGGN-EEDGLRNLNISQCTSLTPSAVQAVCDSSPALHTCSGRHSLIMSGCLNLTSVHCACAIHAHRGIKTFPHTAH 305
            +C+NITD AMYSLAQS VKN+  MW AVK G  +E+GLR+LNISQCT LTPSAVQAVCD+ PALHTCSGRHSL+MSGCLNL SVHCAC + AHR    +PH AH
Sbjct:  257 YCRNITDRAMYSLAQSGVKNKHEMWRAVKKGKFDEEGLRSLNISQCTYLTPSAVQAVCDTFPALHTCSGRHSLVMSGCLNLQSVHCACILQAHRTHTVYPHPAH 360
The following BLAST results are available for this feature:
BLAST of Pisum_sativum_v1_Contig2661 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Swissprot)
Total hits: 2
Match NameE-valueIdentityDescription
SKP2A_ARATH5.815e-3872.12F-box protein SKP2A OS=Arabidopsis thaliana GN=SKP... [more]
FBL5_ARATH5.815e-3873.08F-box/LRR-repeat protein 5 OS=Arabidopsis thaliana... [more]
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BLAST of Pisum_sativum_v1_Contig2661 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
B7FL57_MEDTR1.077e-4789.11Putative uncharacterized protein OS=Medicago trunc... [more]
B7FJG1_MEDTR1.077e-4789.11Putative uncharacterized protein OS=Medicago trunc... [more]
C6TJ50_SOYBN3.141e-3977.45Putative uncharacterized protein OS=Glycine max PE... [more]
B9H7L8_POPTR1.010e-3769.90Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
B9S2N9_RICCO2.251e-3770.87F-box/LRR-repeat protein, putative OS=Ricinus comm... [more]
D7KK09_ARALY8.553e-3772.12F-box family protein OS=Arabidopsis lyrata subsp. ... [more]
B9GTP8_POPTR2.488e-3666.99Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
D7KTZ3_ARALY3.250e-3671.96Putative uncharacterized protein OS=Arabidopsis ly... [more]
Q60EC4_ORYSJ2.575e-3370.71Os05g0425700 protein OS=Oryza sativa subsp. japoni... [more]
A2Y4V4_ORYSI2.575e-3370.71Putative uncharacterized protein OS=Oryza sativa s... [more]
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BLAST of Pisum_sativum_v1_Contig2661 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide)
Total hits: 3
Match NameE-valueIdentityDescription
AT1G77000.25.901e-3973.08| Symbols: SKP2B | RNI-like superfamily protein | ... [more]
AT1G21410.15.901e-3972.12| Symbols: SKP2A | F-box/RNI-like superfamily prot... [more]
AT1G77000.15.901e-3973.08| Symbols: ATSKP2;2, SKP2B | RNI-like superfamily ... [more]
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InterPro
Analysis Name: InterProScan analysis for Pisum sativum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 15..26
score
NoneNo IPR availablePANTHERPTHR23125F-BOX/LEUCINE RICH REPEAT PROTEINcoord: 2..100
score: 1.3
NoneNo IPR availablePANTHERPTHR23125:SF48FBXL20coord: 2..100
score: 1.3

Sequences
The following sequences are available for this feature:

contig sequence

>Pisum_sativum_v1_Contig2661 ID=Pisum_sativum_v1_Contig2661; Name=Pisum_sativum_v1_Contig2661; organism=Pisum sativum; type=contig; length=675bp
ACTTCTGCAAGAACATAACAGACAATGCAATGTATTCCTTAGCACAAAGC
AAGGTAAAGAACAGGATGTGGGAAGCTGTGAAAGGAGGAAATGAAGAAGA
TGGACTAAGGAATTTGAACATTAGTCAGTGCACTTCACTCACTCCTTCTG
CTGTTCAGGCGGTTTGTGATTCATCCCCTGCACTCCACACATGCTCTGGA
AGACACTCACTCATCATGAGTGGTTGTCTCAATTTGACTTCTGTACATTG
TGCTTGTGCTATTCATGCACACCGAGGAATCAAAACCTTCCCTCATACTG
CTCATTAATAAACCACATGACTTCGAGGAAGTGCCTTTGATGGGCTCAGA
GAAGTGTGCGATGCTGCTATCCTTTCCTTCCCCCTCCCCTGTGGTGTAGA
TACGTTTGTGTTGGAGACTTGAGCTACAAATGAACAGCCATTTGTTGTTG
TGTTTCATAATCTTTGTTTTATTTATTCCCCCAACTATGGAGTTTTATGA
TGTTTTGGATGCAAAAAAACTAGCTTGTTCCTGGTTAGCTGCAGTTGTTT
ATTGGAAGACATGGACTTCTAGTTTCCTAATGTGTTTGGTATTAGAAGAA
TATGAACATTATCCATCTGTCTTCCATGATGATTAAATAGGTTTTTTCCT
ATTTATAAGAGACAGTTTATTTTTA
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