Pisum_sativum_v1_Contig2712

Contig Overview


Name	Pisum_sativum_v1_Contig2712
Unique Name	Pisum_sativum_v1_Contig2712
Type	contig
Organism	Pisum sativum (pea)
Sequence length	487

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
AM161742	EST	AM161742:1..435 +	Pisum sativum unigene v1	n/a
FG531874	EST	FG531874:131..435 +	Pisum sativum unigene v1	n/a
EX569889	EST	EX569889:15..487 +	Pisum sativum unigene v1	n/a

Unigenes

This contig is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Pisum sativum unigene v1	Pisum sativum unigene v1	contig

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Pisum sativum unigene v1	2010-12-27
Homology Analysis: Pisum sativum unigene v1 vs Trembl	2010-12-28
Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide	2011-02-03
InterProScan analysis for Pisum sativum unigene v1	2010-12-29

Relationships

The following EST feature(s) are a part of this contig:


Feature Name	Unique Name	Species	Type
AM161742	AM161742	Pisum sativum	EST
FG531874	FG531874	Pisum sativum	EST
EX569889	EX569889	Pisum sativum	EST

Homology

[Close]

BLAST of Pisum_sativum_v1_Contig2712 vs. TrEMBL
Match: C6SVA3_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.220e-30
Identity = 79/124 (63.71%), Postives = 86/124 (69.35%), Query Frame = 2

Query:   26 MASASVARALPLSSATQNKLKNPPSESFFRPLHVTQPKRTTQT-----KSKVEINASLKEKAVXXXXXXXXXXXMVIPDVAHAAGSDLSPSLQNFLLSIFAGGAVLTAILGAVIGVSNFDPVKR 382
            MASASV  AL L S T N    P SE+FFRPL + QPKRT  T      SK +INASLKEKAV           MV+P+VAHAAG + SPSL+NFLLSIFAGG VL AI GAVIGVSNFDPVKR
Sbjct:    1 MASASVPMALSLGSVTNNN--KPSSEAFFRPLPLRQPKRTLFTTKAVSNSKPQINASLKEKAVAGLTAASVTASMVVPEVAHAAGYEFSPSLKNFLLSIFAGGVVLAAIFGAVIGVSNFDPVKR 122

[Close]

BLAST of Pisum_sativum_v1_Contig2712 vs. TrEMBL
Match: C6TBW1_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 6.053e-30
Identity = 78/124 (62.90%), Postives = 85/124 (68.55%), Query Frame = 2

Query:   26 MASASVARALPLSSATQNKLKNPPSESFFRPLHVTQPKRTTQT-----KSKVEINASLKEKAVXXXXXXXXXXXMVIPDVAHAAGSDLSPSLQNFLLSIFAGGAVLTAILGAVIGVSNFDPVKR 382
            MASASV  A  LSS   N    P SE+FFRPL + QPKRT  T      SK +INASLKEKAV           MV+P+VAHAAG + SPSL+NFLLSIFAGG VL AI GAVIGVSNFDPVKR
Sbjct:    1 MASASVPMAFSLSSVINNN--KPSSEAFFRPLPLRQPKRTLFTTKAVANSKAQINASLKEKAVAGLTAASVTASMVVPEVAHAAGYEFSPSLKNFLLSIFAGGFVLVAIFGAVIGVSNFDPVKR 122

[Close]

BLAST of Pisum_sativum_v1_Contig2712 vs. TrEMBL
Match: B9RK19_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1045940 PE=4 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.068e-26
Identity = 70/123 (56.91%), Postives = 90/123 (73.17%), Query Frame = 2

Query:   26 MASAS-VARALPLSSATQNKLKNPPSESFFRPLHVTQPKRTTQTKS--KVEINASLKEKAVXXXXXXXXXXXMVIPDVAHAAGSDLSPSLQNFLLSIFAGGAVLTAILGAVIGVSNFDPVKRA 385
            MAS S V+ A+P++SA+Q K+  P SE+FF+PL + Q K    +KS  K ++ ASLKEKA+           MVIP+VA AAGS +SPSL+NFLLSI AGG VLTAI+GA+IGV+NFDPVKR+
Sbjct:    1 MASTSAVSMAMPITSASQKKV--PSSEAFFKPLPLRQSKAVMASKSNGKFQVKASLKEKAITGLTAAALTASMVIPEVAEAAGSGVSPSLKNFLLSIVAGGVVLTAIVGAIIGVANFDPVKRS 121

[Close]

BLAST of Pisum_sativum_v1_Contig2712 vs. TrEMBL
Match: B9HD21_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_832074 PE=4 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 4.489e-25
Identity = 64/123 (52.03%), Postives = 87/123 (70.73%), Query Frame = 2

Query:   35 ASVARALPLSSATQNKLKNPP-SESFFRPLHVTQPKRT-----TQTKSKVEINASLKEKAVXXXXXXXXXXXMVIPDVAHAAGSDLSPSLQNFLLSIFAGGAVLTAILGAVIGVSNFDPVKRA 385
            ASV+ A+PL+SA+Q +L+ PP S+SF +PL +           +++++++E+ ASLKEKAV           MVIP+VA AAG  +SPSL+NFLLSI AGG V  AI+GAV+GVSNFDPVKR+
Sbjct:    2 ASVSMAMPLASASQKRLEQPPNSQSFLKPLPIRPSMEVGLSTKSKSRARLEVQASLKEKAVTGLTAAALTASMVIPEVAEAAGPGISPSLKNFLLSIAAGGVVAVAIIGAVLGVSNFDPVKRS 124

[Close]

BLAST of Pisum_sativum_v1_Contig2712 vs. TrEMBL
Match: B9MSX5_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_739111 PE=4 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.706e-24
Identity = 69/122 (56.56%), Postives = 84/122 (68.85%), Query Frame = 2

Query:   26 MASAS-VARALPLSSATQNKLKNPPSESFFRPLHVTQPKRTTQTKS--KVEINASLKEKAVXXXXXXXXXXXMVIPDVAHAAGSDLSPSLQNFLLSIFAGGAVLTAILGAVIGVSNFDPVKR 382
            MAS S V+ ALPL+ A+Q ++  P SE+FF+PL     K  + +KS  + ++ ASLKEK V           MVIPDVA AAG+  SPSL+NFLLSI AGG VL AI+GAVIGVSNFDPVKR
Sbjct:    1 MASTSAVSMALPLTYASQKRI--PASEAFFKPLPARPSKAMSASKSSGRFQVKASLKEKLVTGLTAGALTASMVIPDVAEAAGAGASPSLKNFLLSIVAGGVVLVAIIGAVIGVSNFDPVKR 120

[Close]

BLAST of Pisum_sativum_v1_Contig2712 vs. TrEMBL
Match: A9PJ86_9ROSI (Putative uncharacterized protein OS=Populus trichocarpa x Populus deltoides PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 6.482e-24
Identity = 68/122 (55.74%), Postives = 84/122 (68.85%), Query Frame = 2

Query:   26 MASAS-VARALPLSSATQNKLKNPPSESFFRPLHVTQPKRTTQTKS--KVEINASLKEKAVXXXXXXXXXXXMVIPDVAHAAGSDLSPSLQNFLLSIFAGGAVLTAILGAVIGVSNFDPVKR 382
            MAS S V+ ALPL+ A+Q ++  P SE+FF+PL     K  + +KS  + ++ ASLKEK V           MVIP+VA AAG+  SPSL+NFLLSI AGG VL AI+GAVIGVSNFDPVKR
Sbjct:    1 MASTSAVSMALPLTYASQKRV--PASEAFFKPLPARPSKAMSASKSSGRFQVKASLKEKLVTGLTAGALTASMVIPEVAEAAGAGTSPSLKNFLLSIVAGGVVLVAIIGAVIGVSNFDPVKR 120

[Close]

BLAST of Pisum_sativum_v1_Contig2712 vs. TrEMBL
Match: A9PE66_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 6.482e-24
Identity = 68/122 (55.74%), Postives = 84/122 (68.85%), Query Frame = 2

Query:   26 MASAS-VARALPLSSATQNKLKNPPSESFFRPLHVTQPKRTTQTKS--KVEINASLKEKAVXXXXXXXXXXXMVIPDVAHAAGSDLSPSLQNFLLSIFAGGAVLTAILGAVIGVSNFDPVKR 382
            MAS S V+ ALPL+ A+Q ++  P SE+FF+PL     K  + +KS  + ++ ASLKEK V           MVIP+VA AAG+  SPSL+NFLLSI AGG VL AI+GAVIGVSNFDPVKR
Sbjct:    1 MASTSAVSMALPLTYASQKRV--PASEAFFKPLPARPSKAMSASKSSGRFQVKASLKEKLVTGLTAGALTASMVIPEVAEAAGAGASPSLKNFLLSIVAGGVVLVAIIGAVIGVSNFDPVKR 120

[Close]

BLAST of Pisum_sativum_v1_Contig2712 vs. TrEMBL
Match: D7STV7_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_8.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00035449001 PE=4 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.444e-23
Identity = 66/122 (54.10%), Postives = 85/122 (69.67%), Query Frame = 2

Query:   35 ASVARALPLSSATQNKL-KNPPSESFFRPLHVTQPKRTTQTK-----SKVEINASLKEKAVXXXXXXXXXXXMVIPDVAHAAGSDLSPSLQNFLLSIFAGGAVLTAILGAVIGVSNFDPVKR 382
            ASV+ A+ L+SA+QN+L + P SE+FF+PL V   K+    K     S++E+ ASLKEKA+           MV+P+ A AA S +SPSL+NFLLSI AGG VL AI+GAVIGV+NFDPVKR
Sbjct:    2 ASVSMAMRLTSASQNRLLQRPTSEAFFQPLQVKPSKKAVAVKPKSRGSRLEVKASLKEKAITGLTAAALTASMVLPEAAEAA-SGVSPSLKNFLLSIVAGGVVLGAIVGAVIGVANFDPVKR 122

[Close]

BLAST of Pisum_sativum_v1_Contig2712 vs. TrEMBL
Match: B9N5E4_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_745105 PE=4 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.765e-21
Identity = 63/124 (50.81%), Postives = 80/124 (64.52%), Query Frame = 2

Query:   26 MASAS-VARALPLSSATQNKLKNPPSESFFRPLHVTQPKR---TTQTKSKVEINASLKEKAVXXXXXXXXXXXMVIPDVAHAAGSDLSPSLQNFLLSIFAGGAVLTAILGAVIGVSNFDPVKRA 385
            MAS S V+ A+PL+ A++     P SE+FF+PL V   K     ++   + ++ ASLKEK V           MVIP+VA AAG  +SPSL NFLLSI AGG VL AI GAV+GVSNFDPV+R+
Sbjct:    1 MASTSAVSMAMPLTHASRKAA--PTSEAFFKPLPVRPSKAIAAASRCNGRFQVKASLKEKVVTGLTAGALTVSMVIPEVAEAAGPGVSPSLNNFLLSIVAGGVVLAAIAGAVVGVSNFDPVRRS 122

[Close]

BLAST of Pisum_sativum_v1_Contig2712 vs. TrEMBL
Match: A9PJ43_9ROSI (Putative uncharacterized protein OS=Populus trichocarpa x Populus deltoides PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 5.136e-21
Identity = 62/124 (50.00%), Postives = 79/124 (63.71%), Query Frame = 2

Query:   26 MASAS-VARALPLSSATQNKLKNPPSESFFRPLHVTQPKR---TTQTKSKVEINASLKEKAVXXXXXXXXXXXMVIPDVAHAAGSDLSPSLQNFLLSIFAGGAVLTAILGAVIGVSNFDPVKRA 385
            MAS S V+ A+PL+ A++     P SE+FF+PL     K     ++   + ++ ASLKEK V           MVIP+VA AAG  +SPSL NFLLSI AGG VL AI GAV+GVSNFDPV+R+
Sbjct:    1 MASTSAVSMAMPLTHASRKAA--PTSEAFFKPLPARPSKAIAAASRCNDRFQVKASLKEKVVTGLTAGALTVSMVIPEVAEAAGPGVSPSLNNFLLSIVAGGVVLVAIAGAVVGVSNFDPVRRS 122

[Close]

BLAST of Pisum_sativum_v1_Contig2712 vs. TAIR peptide
Match: AT2G06520.1 (| Symbols: PSBX | photosystem II subunit X | chr2:2587868-2588218 REVERSE LENGTH=116)

HSP 1 Score: 85.5001 bits (210), Expect = 1.596e-17
Identity = 47/103 (45.63%), Postives = 62/103 (60.19%), Query Frame = 2

Query:   83 LKNPPSESFFRPLHVTQPKRTTQT---KSKVEINASLKEKAVXXXXXXXXXXXMVIPDVAHAAGSDLSPSLQNFLLSIFAGGAVLTAILGAVIGVSNFDPVKR 382
            L    S  F +PL +   K    T     ++++ A   +KA+           MVIP++A AAGS +SPSL+NFLLSI +GG VLT I+G V+GVSNFDPVKR
Sbjct:   13 LNQTRSSPFLKPLPLKPSKALVATGGRAQRLQVKALKMDKALTGISAAALTASMVIPEIAEAAGSGISPSLKNFLLSIASGGLVLTVIIGVVVGVSNFDPVKR 115

The following BLAST results are available for this feature:

BLAST of Pisum_sativum_v1_Contig2712 vs. TrEMBL
BLAST of Pisum_sativum_v1_Contig2712 vs. TAIR peptide

BLAST of Pisum_sativum_v1_Contig2712 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
C6SVA3_SOYBN	1.220e-30	63.71	Putative uncharacterized protein OS=Glycine max PE...	[more]
C6TBW1_SOYBN	6.053e-30	62.90	Putative uncharacterized protein OS=Glycine max PE...	[more]
B9RK19_RICCO	1.068e-26	56.91	Putative uncharacterized protein OS=Ricinus commun...	[more]
B9HD21_POPTR	4.489e-25	52.03	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
B9MSX5_POPTR	1.706e-24	56.56	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
A9PJ86_9ROSI	6.482e-24	55.74	Putative uncharacterized protein OS=Populus tricho...	[more]
A9PE66_POPTR	6.482e-24	55.74	Putative uncharacterized protein OS=Populus tricho...	[more]
D7STV7_VITVI	1.444e-23	54.10	Whole genome shotgun sequence of line PN40024, sca...	[more]
B9N5E4_POPTR	1.765e-21	50.81	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
A9PJ43_9ROSI	5.136e-21	50.00	Putative uncharacterized protein OS=Populus tricho...	[more]

BLAST of Pisum_sativum_v1_Contig2712 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide)
Total hits: 1


Match Name	E-value	Identity	Description
AT2G06520.1	1.596e-17	45.63	\| Symbols: PSBX \| photosystem II subunit X \| chr2:...	[more]

InterPro

Analysis Name: InterProScan analysis for Pisum sativum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009518	Photosystem II PsbX	PFAM	PF06596	PsbX	coord: 92..127 score: 1.8
None	No IPR available	SEG	seg	seg	coord: 67..77 score

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>Pisum_sativum_v1_Contig2712 ID=Pisum_sativum_v1_Contig2712; Name=Pisum_sativum_v1_Contig2712; organism=Pisum sativum; type=contig; length=487bp
AGCAAAACAAACAAGAACAAAAAAAATGGCTTCTGCTTCTGTTGCAAGAG
CTTTGCCACTGAGTTCTGCAACCCAAAATAAGCTGAAGAATCCACCCTCC
GAGTCCTTTTTCAGACCATTACATGTAACACAGCCAAAGAGGACCACACA
GACAAAATCCAAGGTTGAGATTAATGCATCTTTGAAAGAGAAGGCAGTGA
CAGCTCTTACAGCTGCATCCTTGACAGCTTCCATGGTTATACCTGATGTG
GCTCATGCAGCTGGATCTGATCTCTCACCTTCTCTCCAGAACTTTCTGCT
AAGTATTTTTGCTGGTGGAGCTGTGTTAACAGCTATACTTGGAGCTGTTA
TTGGAGTTTCCAATTTTGATCCAGTTAAAAGAGCTTAAATTAAGTATGTC
TTGAAAAGCTCTTAAATTTTATGTGTTTTTGATTTAGTTTCTGTCTTATT
TGTATCTAATATGTTTGTGCAACTGGTTTTCTTATAT

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **Cellular Component**
Term	Definition
GO:0009523	photosystem II
GO:0016020	membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0015979	photosynthesis

Vocabulary: **INTERPRO**
Term	Definition
IPR009518	PSII_PsbX

Search form

Pisum_sativum_v1_Contig2712