Pisum_sativum_v1_Contig2734

Contig Overview


Name	Pisum_sativum_v1_Contig2734
Unique Name	Pisum_sativum_v1_Contig2734
Type	contig
Organism	Pisum sativum (pea)
Sequence length	725

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
CD861260	EST	CD861260:1..651 +	Pisum sativum unigene v1	n/a
FG529488	EST	FG529488:54..622 +	Pisum sativum unigene v1	n/a
FG530990	EST	FG530990:35..661 +	Pisum sativum unigene v1	n/a
FG533969	EST	FG533969:106..674 +	Pisum sativum unigene v1	n/a
FG533586	EST	FG533586:56..725 +	Pisum sativum unigene v1	n/a

Unigenes

This contig is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Pisum sativum unigene v1	Pisum sativum unigene v1	contig

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Pisum sativum unigene v1	2010-12-27
Homology Analysis: Pisum sativum unigene v1 vs Trembl	2010-12-28
Homology Analysis: Pisum sativum unigene v1 vs Swissprot	2010-12-28
Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide	2011-02-03
InterProScan analysis for Pisum sativum unigene v1	2010-12-29

Relationships

The following EST feature(s) are a part of this contig:


Feature Name	Unique Name	Species	Type
CD861260	CD861260	Pisum sativum	EST
FG529488	FG529488	Pisum sativum	EST
FG530990	FG530990	Pisum sativum	EST
FG533969	FG533969	Pisum sativum	EST
FG533586	FG533586	Pisum sativum	EST

Homology

[Close]

BLAST of Pisum_sativum_v1_Contig2734 vs. SwissProt
Match: H11_ARATH (Histone H1.1 OS=Arabidopsis thaliana GN=At1g06760 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.027e-22
Identity = 53/68 (77.94%), Postives = 62/68 (91.18%), Query Frame = 1

Query:   70 SHPTFAEMITEAITSLKERTGSSQYAITKFIEEKYKDLPPTYRKLVLLHLKKSVASGKLVKVKSSFKL 273
            SHPT+ EMI +AI +LKERTGSSQYAI KFIEEK K+LPPT+RKL+LL+LK+ VASGKLVKVK+SFKL
Sbjct:   61 SHPTYEEMIKDAIVTLKERTGSSQYAIQKFIEEKRKELPPTFRKLLLLNLKRLVASGKLVKVKASFKL 128

[Close]

BLAST of Pisum_sativum_v1_Contig2734 vs. SwissProt
Match: H1_EUPES (Histone H1 OS=Euphorbia esula PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.656e-22
Identity = 50/68 (73.53%), Postives = 61/68 (89.71%), Query Frame = 1

Query:   70 SHPTFAEMITEAITSLKERTGSSQYAITKFIEEKYKDLPPTYRKLVLLHLKKSVASGKLVKVKSSFKL 273
            SHP+F EMI++AI++LKERTGSSQYAI KF+E+K+K LP  +RKL+L HLKK VASGKLVKVK+SFKL
Sbjct:   50 SHPSFFEMISDAISTLKERTGSSQYAINKFVEDKHKQLPSNFRKLLLFHLKKLVASGKLVKVKNSFKL 117

[Close]

BLAST of Pisum_sativum_v1_Contig2734 vs. SwissProt
Match: H12_ARATH (Histone H1.2 OS=Arabidopsis thaliana GN=At2g30620 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.937e-21
Identity = 50/68 (73.53%), Postives = 61/68 (89.71%), Query Frame = 1

Query:   70 SHPTFAEMITEAITSLKERTGSSQYAITKFIEEKYKDLPPTYRKLVLLHLKKSVASGKLVKVKSSFKL 273
            SHPT+ EMI +AI +LKERTGSSQYAI KFIEEK+K LPPT+RKL+L++LK+ VAS KLVKVK+SFK+
Sbjct:   61 SHPTYEEMIKDAIVTLKERTGSSQYAIQKFIEEKHKSLPPTFRKLLLVNLKRLVASEKLVKVKASFKI 128

[Close]

BLAST of Pisum_sativum_v1_Contig2734 vs. SwissProt
Match: H1_PEA (Histone H1 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.770e-20
Identity = 48/68 (70.59%), Postives = 57/68 (83.82%), Query Frame = 1

Query:   70 SHPTFAEMITEAITSLKERTGSSQYAITKFIEEKYKDLPPTYRKLVLLHLKKSVASGKLVKVKSSFKL 273
            SHPT+ EMI +AI SLKE+ GSSQYAI KFIEEK K LP  ++KL+L +LKK+VASGKL+KVK SFKL
Sbjct:   61 SHPTYEEMIKDAIVSLKEKNGSSQYAIAKFIEEKQKQLPANFKKLLLQNLKKNVASGKLIKVKGSFKL 128

[Close]

BLAST of Pisum_sativum_v1_Contig2734 vs. SwissProt
Match: H1_SOLLC (Histone H1 OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.465e-18
Identity = 46/68 (67.65%), Postives = 56/68 (82.35%), Query Frame = 1

Query:   70 SHPTFAEMITEAITSLKERTGSSQYAITKFIEEKYKDLPPTYRKLVLLHLKKSVASGKLVKVKSSFKL 273
            +HP + EMI +AI +LKERTGSSQ+AITKFIEEK K LP  ++KL+L  LKK VAS KLVKVK+S+KL
Sbjct:   55 THPPYFEMIKDAIVTLKERTGSSQHAITKFIEEKQKSLPSNFKKLLLTQLKKFVASEKLVKVKNSYKL 122

[Close]

BLAST of Pisum_sativum_v1_Contig2734 vs. SwissProt
Match: H1_MAIZE (Histone H1 OS=Zea mays PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.697e-17
Identity = 45/69 (65.22%), Postives = 57/69 (82.61%), Query Frame = 1

Query:   70 SHPTFAEMITEAITSLKERTGSSQYAITKFIEEKYK-DLPPTYRKLVLLHLKKSVASGKLVKVKSSFKL 273
            +H  +AEM++EAITSLKERTGSS YAI KF+E+K+K  LPP +RKL+ + LKK VA GKL KVK+S+KL
Sbjct:   49 THLPYAEMVSEAITSLKERTGSSSYAIAKFVEDKHKAKLPPNFRKLLNVQLKKLVAGGKLTKVKNSYKL 117

[Close]

BLAST of Pisum_sativum_v1_Contig2734 vs. SwissProt
Match: H1_WHEAT (Histone H1 OS=Triticum aestivum PE=2 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.588e-15
Identity = 41/69 (59.42%), Postives = 56/69 (81.16%), Query Frame = 1

Query:   70 SHPTFAEMITEAITSLKERTGSSQYAITKFIEEKYK-DLPPTYRKLVLLHLKKSVASGKLVKVKSSFKL 273
            +HP++AEM++EAI +LKER+GSS  AI KFIE+K+K  LP  +RK++L  +KK VA+GKL KVK S+KL
Sbjct:   54 AHPSYAEMVSEAIAALKERSGSSTIAIGKFIEDKHKAHLPANFRKILLTQIKKLVAAGKLTKVKGSYKL 122

[Close]

BLAST of Pisum_sativum_v1_Contig2734 vs. SwissProt
Match: H1_SOLPN (Histone H1 OS=Solanum pennellii PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.486e-13
Identity = 35/70 (50.00%), Postives = 54/70 (77.14%), Query Frame = 1

Query:   67 LSHPTFAEMITEAITSLKERTGSSQYAITKFIEEKYKD-LPPTYRKLVLLHLKKSVASGKLVKVKSSFKL 273
            ++HP + +MI EA+ +L E+ GSS YA+ K++E+K+KD LP  +RK++ L LK S A GKL+K+K+S+KL
Sbjct:   47 VTHPPYFQMIKEALLALNEKGGSSPYAVAKYMEDKHKDELPANFRKILGLQLKNSAAKGKLIKIKASYKL 116

[Close]

BLAST of Pisum_sativum_v1_Contig2734 vs. SwissProt
Match: H1_DICDI (Histone H1 OS=Dictyostelium discoideum GN=H1 PE=1 SV=3)

HSP 1 Score: 66.2402 bits (160), Expect = 2.009e-10
Identity = 34/68 (50.00%), Postives = 45/68 (66.18%), Query Frame = 1

Query:   70 SHPTFAEMITEAITSLKERTGSSQYAITKFIEEKYKDLPPTYRKLVLLHLKKSVASGKLVKVKSSFKL 273
            +HPT+  MI+ AI   K+RTGSSQ AI K+IE  Y   P T++  + L LK+ VA G L  VK+S+KL
Sbjct:   23 NHPTYQVMISTAIAHYKDRTGSSQPAIIKYIEANYNVAPDTFKTQLKLALKRLVAKGTLTMVKASYKL 90

[Close]

BLAST of Pisum_sativum_v1_Contig2734 vs. SwissProt
Match: H12_VOLCA (Histone H1-II OS=Volvox carteri GN=H1-II PE=2 SV=3)

HSP 1 Score: 66.2402 bits (160), Expect = 2.009e-10
Identity = 38/70 (54.29%), Postives = 50/70 (71.43%), Query Frame = 1

Query:   70 SHPTFAEMITEAITSLKERTGSSQYAITKFIEEKY-KDL-PPTYRKLVLLHLKKSVASGKLVKVKSSFKL 273
            +HP + +M+T+AI SLKER GSS  A+ KFIE KY KD+    + K + L LK  V +GKLVKVK+S+KL
Sbjct:   24 THPPYIQMVTDAILSLKERDGSSLPALKKFIEAKYGKDIHDKKFPKTLSLALKTFVKNGKLVKVKNSYKL 93

[Close]

BLAST of Pisum_sativum_v1_Contig2734 vs. TrEMBL
Match: Q4A196_PEA (Histone H1 subtype 7 OS=Pisum sativum GN=his7 PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 7.407e-32
Identity = 75/87 (86.21%), Postives = 75/87 (86.21%), Query Frame = 1

Query:   13 MSTVAQXXXXXXXXXXXXLSHPTFAEMITEAITSLKERTGSSQYAITKFIEEKYKDLPPTYRKLVLLHLKKSVASGKLVKVKSSFKL 273
            MSTVAQ            LSHPTFAEMITEAITSLKERTGSSQYAITKFIEEKYKDLPPTYRKLVLLHLKKSVASGKLVKVKSSFKL
Sbjct:    1 MSTVAQTKPKKTAAAKKPLSHPTFAEMITEAITSLKERTGSSQYAITKFIEEKYKDLPPTYRKLVLLHLKKSVASGKLVKVKSSFKL 87

[Close]

BLAST of Pisum_sativum_v1_Contig2734 vs. TrEMBL
Match: Q4A195_PEA (Histone H1 subtype 7 OS=Pisum sativum GN=his7 PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 7.407e-32
Identity = 75/87 (86.21%), Postives = 75/87 (86.21%), Query Frame = 1

Query:   13 MSTVAQXXXXXXXXXXXXLSHPTFAEMITEAITSLKERTGSSQYAITKFIEEKYKDLPPTYRKLVLLHLKKSVASGKLVKVKSSFKL 273
            MSTVAQ            LSHPTFAEMITEAITSLKERTGSSQYAITKFIEEKYKDLPPTYRKLVLLHLKKSVASGKLVKVKSSFKL
Sbjct:    1 MSTVAQTKPKKTAAAKKPLSHPTFAEMITEAITSLKERTGSSQYAITKFIEEKYKDLPPTYRKLVLLHLKKSVASGKLVKVKSSFKL 87

[Close]

BLAST of Pisum_sativum_v1_Contig2734 vs. TrEMBL
Match: Q4A197_PEA (Histone H1 subtype 7 OS=Pisum sativum GN=his7 PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.815e-31
Identity = 74/87 (85.06%), Postives = 75/87 (86.21%), Query Frame = 1

Query:   13 MSTVAQXXXXXXXXXXXXLSHPTFAEMITEAITSLKERTGSSQYAITKFIEEKYKDLPPTYRKLVLLHLKKSVASGKLVKVKSSFKL 273
            MSTVAQ            LSHPTFAEMITEAITSLKERTGSSQYAITKFIEEK+KDLPPTYRKLVLLHLKKSVASGKLVKVKSSFKL
Sbjct:    1 MSTVAQTKPKKTAAAKKPLSHPTFAEMITEAITSLKERTGSSQYAITKFIEEKHKDLPPTYRKLVLLHLKKSVASGKLVKVKSSFKL 87

[Close]

BLAST of Pisum_sativum_v1_Contig2734 vs. TrEMBL
Match: Q41025_PEA (Histone H1 OS=Pisum sativum GN=H1-41 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 6.270e-31
Identity = 73/87 (83.91%), Postives = 75/87 (86.21%), Query Frame = 1

Query:   13 MSTVAQXXXXXXXXXXXXLSHPTFAEMITEAITSLKERTGSSQYAITKFIEEKYKDLPPTYRKLVLLHLKKSVASGKLVKVKSSFKL 273
            MSTVAQ            LSHPTFAEMITEAITSLKERTGSSQYAITKFIEEK+KDLPPTYRKLVLLHLKKSVASGKLV+VKSSFKL
Sbjct:    1 MSTVAQTKPKKTAAAKKPLSHPTFAEMITEAITSLKERTGSSQYAITKFIEEKHKDLPPTYRKLVLLHLKKSVASGKLVRVKSSFKL 87

[Close]

BLAST of Pisum_sativum_v1_Contig2734 vs. TrEMBL
Match: C6TI08_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.560e-26
Identity = 64/87 (73.56%), Postives = 70/87 (80.46%), Query Frame = 1

Query:   13 MSTVAQXXXXXXXXXXXXLSHPTFAEMITEAITSLKERTGSSQYAITKFIEEKYKDLPPTYRKLVLLHLKKSVASGKLVKVKSSFKL 273
            MST AQ            LSHPTFA MI EAI SLKERTGSSQYAITKFIE K+K+LPPTY+KLVL+HLKKSVA+GKLVKVK+SFKL
Sbjct:    1 MSTAAQPKAKKTASSKKPLSHPTFAVMIAEAIASLKERTGSSQYAITKFIEGKHKELPPTYKKLVLVHLKKSVAAGKLVKVKNSFKL 87

[Close]

BLAST of Pisum_sativum_v1_Contig2734 vs. TrEMBL
Match: O65758_CICAR (Histone H1 OS=Cicer arietinum PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 4.650e-26
Identity = 63/86 (73.26%), Postives = 70/86 (81.40%), Query Frame = 1

Query:   16 STVAQXXXXXXXXXXXXLSHPTFAEMITEAITSLKERTGSSQYAITKFIEEKYKDLPPTYRKLVLLHLKKSVASGKLVKVKSSFKL 273
            +T AQ            LSHPT+AEMITEAI SLKERTGSSQ+AITKFIEEK+KDL PT+RKL+LLHLKKSVA+GKLVKVK SFKL
Sbjct:    3 TTAAQPKSKKTASTKKPLSHPTYAEMITEAIVSLKERTGSSQHAITKFIEEKHKDLSPTFRKLILLHLKKSVAAGKLVKVKGSFKL 88

[Close]

BLAST of Pisum_sativum_v1_Contig2734 vs. TrEMBL
Match: C6THP7_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.654e-23
Identity = 59/87 (67.82%), Postives = 68/87 (78.16%), Query Frame = 1

Query:   13 MSTVAQXXXXXXXXXXXXLSHPTFAEMITEAITSLKERTGSSQYAITKFIEEKYKDLPPTYRKLVLLHLKKSVASGKLVKVKSSFKL 273
            MST +Q            LSHP FA MI EAI SLKERTGSSQYA+TK+IE K+K+LP TY+KLVL+HLKKSVA+GKLVKVK+SFKL
Sbjct:    1 MSTASQPKAKKTASSKKPLSHPPFAVMIAEAIASLKERTGSSQYAMTKYIEGKHKELPATYKKLVLVHLKKSVAAGKLVKVKNSFKL 87

[Close]

BLAST of Pisum_sativum_v1_Contig2734 vs. TrEMBL
Match: D7KG63_ARALY (Expressed protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_470698 PE=4 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.548e-21
Identity = 53/68 (77.94%), Postives = 62/68 (91.18%), Query Frame = 1

Query:   70 SHPTFAEMITEAITSLKERTGSSQYAITKFIEEKYKDLPPTYRKLVLLHLKKSVASGKLVKVKSSFKL 273
            SHPT+ EMI +AI +LKERTGSSQYAI KFIEEK K+LPPT+RKL+LL+LK+ VASGKLVKVK+SFKL
Sbjct:   62 SHPTYEEMIKDAIVTLKERTGSSQYAIQKFIEEKRKELPPTFRKLLLLNLKRLVASGKLVKVKASFKL 129

[Close]

BLAST of Pisum_sativum_v1_Contig2734 vs. TrEMBL
Match: B9SZ53_RICCO (Histone h1/h5, putative OS=Ricinus communis GN=RCOM_0484310 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.640e-21
Identity = 51/68 (75.00%), Postives = 61/68 (89.71%), Query Frame = 1

Query:   70 SHPTFAEMITEAITSLKERTGSSQYAITKFIEEKYKDLPPTYRKLVLLHLKKSVASGKLVKVKSSFKL 273
            ++P+F EMI +AI +LKERTGSSQYAITKF+EEK+K LPP +RKL+L HLKK VASGKLVKVK+SFKL
Sbjct:   51 TYPSFLEMINDAIVTLKERTGSSQYAITKFVEEKHKKLPPNFRKLLLFHLKKLVASGKLVKVKNSFKL 118

[Close]

BLAST of Pisum_sativum_v1_Contig2734 vs. TrEMBL
Match: C6THD3_SOYBN (Putative uncharacterized protein (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.882e-21
Identity = 51/68 (75.00%), Postives = 60/68 (88.24%), Query Frame = 1

Query:   70 SHPTFAEMITEAITSLKERTGSSQYAITKFIEEKYKDLPPTYRKLVLLHLKKSVASGKLVKVKSSFKL 273
            +HP++ EMI +AITSLKERTGSSQ+AI KFIEEK+K LPP +RKL+L HLKK VA+GKLVKVK SFKL
Sbjct:   54 THPSYEEMIKDAITSLKERTGSSQHAIAKFIEEKHKQLPPNFRKLLLYHLKKLVAAGKLVKVKGSFKL 121

[Close]

BLAST of Pisum_sativum_v1_Contig2734 vs. TAIR peptide
Match: AT1G06760.1 (| Symbols: | winged-helix DNA-binding transcription factor family protein | chr1:2076687-2077616 REVERSE LENGTH=274)

HSP 1 Score: 107.071 bits (266), Expect = 1.037e-23
Identity = 53/68 (77.94%), Postives = 62/68 (91.18%), Query Frame = 1

Query:   70 SHPTFAEMITEAITSLKERTGSSQYAITKFIEEKYKDLPPTYRKLVLLHLKKSVASGKLVKVKSSFKL 273
            SHPT+ EMI +AI +LKERTGSSQYAI KFIEEK K+LPPT+RKL+LL+LK+ VASGKLVKVK+SFKL
Sbjct:   61 SHPTYEEMIKDAIVTLKERTGSSQYAIQKFIEEKRKELPPTFRKLLLLNLKRLVASGKLVKVKASFKL 128

[Close]

BLAST of Pisum_sativum_v1_Contig2734 vs. TAIR peptide
Match: AT2G30620.2 (| Symbols: | winged-helix DNA-binding transcription factor family protein | chr2:13045360-13046267 FORWARD LENGTH=202)

HSP 1 Score: 102.834 bits (255), Expect = 1.956e-22
Identity = 50/68 (73.53%), Postives = 61/68 (89.71%), Query Frame = 1

Query:   70 SHPTFAEMITEAITSLKERTGSSQYAITKFIEEKYKDLPPTYRKLVLLHLKKSVASGKLVKVKSSFKL 273
            SHPT+ EMI +AI +LKERTGSSQYAI KFIEEK+K LPPT+RKL+L++LK+ VAS KLVKVK+SFK+
Sbjct:   61 SHPTYEEMIKDAIVTLKERTGSSQYAIQKFIEEKHKSLPPTFRKLLLVNLKRLVASEKLVKVKASFKI 128

[Close]

BLAST of Pisum_sativum_v1_Contig2734 vs. TAIR peptide
Match: AT2G30620.1 (| Symbols: | winged-helix DNA-binding transcription factor family protein | chr2:13045360-13046267 FORWARD LENGTH=273)

HSP 1 Score: 102.834 bits (255), Expect = 1.956e-22
Identity = 50/68 (73.53%), Postives = 61/68 (89.71%), Query Frame = 1

Query:   70 SHPTFAEMITEAITSLKERTGSSQYAITKFIEEKYKDLPPTYRKLVLLHLKKSVASGKLVKVKSSFKL 273
            SHPT+ EMI +AI +LKERTGSSQYAI KFIEEK+K LPPT+RKL+L++LK+ VAS KLVKVK+SFK+
Sbjct:   61 SHPTYEEMIKDAIVTLKERTGSSQYAIQKFIEEKHKSLPPTFRKLLLVNLKRLVASEKLVKVKASFKI 128

[Close]

BLAST of Pisum_sativum_v1_Contig2734 vs. TAIR peptide
Match: AT2G18050.1 (| Symbols: HIS1-3 | histone H1-3 | chr2:7846095-7846670 FORWARD LENGTH=167)

HSP 1 Score: 76.6406 bits (187), Expect = 1.501e-14
Identity = 39/69 (56.52%), Postives = 52/69 (75.36%), Query Frame = 1

Query:   70 SHPTFAEMITEAITSLKERTGSSQYAITKFIEEKYKD-LPPTYRKLVLLHLKKSVASGKLVKVKSSFKL 273
            +HP + +MI EA+  LKE+ GSS YAI K IEEK+K  LP ++RK + L LK SVA GKLVK+++S+KL
Sbjct:   23 THPPYFQMIKEALMVLKEKNGSSPYAIAKKIEEKHKSLLPESFRKTLSLQLKNSVAKGKLVKIRASYKL 91

[Close]

BLAST of Pisum_sativum_v1_Contig2734 vs. TAIR peptide
Match: AT2G18050.2 (| Symbols: HIS1-3 | histone H1-3 | chr2:7846254-7846670 FORWARD LENGTH=138)

HSP 1 Score: 69.707 bits (169), Expect = 1.835e-12
Identity = 37/62 (59.68%), Postives = 47/62 (75.81%), Query Frame = 1

Query:   91 MITEAITSLKERTGSSQYAITKFIEEKYKD-LPPTYRKLVLLHLKKSVASGKLVKVKSSFKL 273
            MI EA+  LKE+ GSS YAI K IEEK+K  LP ++RK + L LK SVA GKLVK+++S+KL
Sbjct:    1 MIKEALMVLKEKNGSSPYAIAKKIEEKHKSLLPESFRKTLSLQLKNSVAKGKLVKIRASYKL 62

[Close]

BLAST of Pisum_sativum_v1_Contig2734 vs. TAIR peptide
Match: AT1G48620.1 (| Symbols: HON5 | high mobility group A5 | chr1:17974148-17976301 REVERSE LENGTH=479)

HSP 1 Score: 60.8474 bits (146), Expect = 8.523e-10
Identity = 31/69 (44.93%), Postives = 44/69 (63.77%), Query Frame = 1

Query:   67 LSHPTFAEMITEAITSLKERTGSSQYAITKFIEEKYKDLPPTYRKLVLLHLKKSVASGKLVKVKSSFKL 273
            +SHP +++MI  AI +L E  GSS+ AI+++IE  Y  +P  +  L+  HLK    SG LV VK S+KL
Sbjct:   73 ISHPPYSDMICTAIAALNEPDGSSKQAISRYIERIYTGIPTAHGALLTHHLKTLKTSGILVMVKKSYKL 141

[Close]

BLAST of Pisum_sativum_v1_Contig2734 vs. TAIR peptide
Match: AT3G18035.1 (| Symbols: HON4 | winged-helix DNA-binding transcription factor family protein | chr3:6169384-6171558 REVERSE LENGTH=480)

HSP 1 Score: 55.4546 bits (132), Expect = 3.581e-8
Identity = 29/69 (42.03%), Postives = 41/69 (59.42%), Query Frame = 1

Query:   67 LSHPTFAEMITEAITSLKERTGSSQYAITKFIEEKYKDLPPTYRKLVLLHLKKSVASGKLVKVKSSFKL 273
            + HP ++EMI  AI +L E  GSS+ AI+++IE  Y  L   +  L+  HLK    SG L  VK S+K+
Sbjct:   63 MPHPPYSEMICAAIAALNEPDGSSKMAISRYIERCYTGLTSAHAALLTHHLKTLKTSGVLSMVKKSYKI 131

[Close]

BLAST of Pisum_sativum_v1_Contig2734 vs. TAIR peptide
Match: AT1G14900.1 (| Symbols: HMGA | high mobility group A | chr1:5138665-5139353 REVERSE LENGTH=204)

HSP 1 Score: 51.2174 bits (121), Expect = 6.754e-7
Identity = 24/66 (36.36%), Postives = 41/66 (62.12%), Query Frame = 1

Query:   70 SHPTFAEMITEAITSLKERTGSSQYAITKFIEEKYKDLPPTYRKLVLLHLKKSVASGKLVKVKSSF 267
            S P + +MI EAI SL ++ G ++  I K IE   + LPP++  L+  HL +   +G+L+ VK+++
Sbjct:   22 SLPPYPQMIMEAIESLNDKNGCNKTTIAKHIESTQQTLPPSHMTLLSYHLNQMKKTGQLIMVKNNY 87

The following BLAST results are available for this feature:

BLAST of Pisum_sativum_v1_Contig2734 vs. SwissProt
BLAST of Pisum_sativum_v1_Contig2734 vs. TrEMBL
BLAST of Pisum_sativum_v1_Contig2734 vs. TAIR peptide

BLAST of Pisum_sativum_v1_Contig2734 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Swissprot)
Total hits: 10


Match Name	E-value	Identity	Description
H11_ARATH	1.027e-22	77.94	Histone H1.1 OS=Arabidopsis thaliana GN=At1g06760 ...	[more]
H1_EUPES	6.656e-22	73.53	Histone H1 OS=Euphorbia esula PE=2 SV=1	[more]
H12_ARATH	1.937e-21	73.53	Histone H1.2 OS=Arabidopsis thaliana GN=At2g30620 ...	[more]
H1_PEA	4.770e-20	70.59	Histone H1 OS=Pisum sativum PE=2 SV=1	[more]
H1_SOLLC	4.465e-18	67.65	Histone H1 OS=Solanum lycopersicum PE=3 SV=1	[more]
H1_MAIZE	1.697e-17	65.22	Histone H1 OS=Zea mays PE=2 SV=2	[more]
H1_WHEAT	1.588e-15	59.42	Histone H1 OS=Triticum aestivum PE=2 SV=2	[more]
H1_SOLPN	1.486e-13	50.00	Histone H1 OS=Solanum pennellii PE=2 SV=1	[more]
H1_DICDI	2.009e-10	50.00	Histone H1 OS=Dictyostelium discoideum GN=H1 PE=1 ...	[more]
H12_VOLCA	2.009e-10	54.29	Histone H1-II OS=Volvox carteri GN=H1-II PE=2 SV=3	[more]

BLAST of Pisum_sativum_v1_Contig2734 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
Q4A196_PEA	7.407e-32	86.21	Histone H1 subtype 7 OS=Pisum sativum GN=his7 PE=3...	[more]
Q4A195_PEA	7.407e-32	86.21	Histone H1 subtype 7 OS=Pisum sativum GN=his7 PE=3...	[more]
Q4A197_PEA	2.815e-31	85.06	Histone H1 subtype 7 OS=Pisum sativum GN=his7 PE=3...	[more]
Q41025_PEA	6.270e-31	83.91	Histone H1 OS=Pisum sativum GN=H1-41 PE=2 SV=1	[more]
C6TI08_SOYBN	3.560e-26	73.56	Putative uncharacterized protein OS=Glycine max PE...	[more]
O65758_CICAR	4.650e-26	73.26	Histone H1 OS=Cicer arietinum PE=2 SV=1	[more]
C6THP7_SOYBN	1.654e-23	67.82	Putative uncharacterized protein OS=Glycine max PE...	[more]
D7KG63_ARALY	1.548e-21	77.94	Expressed protein OS=Arabidopsis lyrata subsp. lyr...	[more]
B9SZ53_RICCO	2.640e-21	75.00	Histone h1/h5, putative OS=Ricinus communis GN=RCO...	[more]
C6THD3_SOYBN	5.882e-21	75.00	Putative uncharacterized protein (Fragment) OS=Gly...	[more]

BLAST of Pisum_sativum_v1_Contig2734 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide)
Total hits: 8


Match Name	E-value	Identity	Description
AT1G06760.1	1.037e-23	77.94	\| Symbols: \| winged-helix DNA-binding transcripti...	[more]
AT2G30620.2	1.956e-22	73.53	\| Symbols: \| winged-helix DNA-binding transcripti...	[more]
AT2G30620.1	1.956e-22	73.53	\| Symbols: \| winged-helix DNA-binding transcripti...	[more]
AT2G18050.1	1.501e-14	56.52	\| Symbols: HIS1-3 \| histone H1-3 \| chr2:7846095-78...	[more]
AT2G18050.2	1.835e-12	59.68	\| Symbols: HIS1-3 \| histone H1-3 \| chr2:7846254-78...	[more]
AT1G48620.1	8.523e-10	44.93	\| Symbols: HON5 \| high mobility group A5 \| chr1:17...	[more]
AT3G18035.1	3.581e-8	42.03	\| Symbols: HON4 \| winged-helix DNA-binding transcr...	[more]
AT1G14900.1	6.754e-7	36.36	\| Symbols: HMGA \| high mobility group A \| chr1:513...	[more]

InterPro

Analysis Name: InterProScan analysis for Pisum sativum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005818	Histone H1/H5	PFAM	PF00538	Linker_histone	coord: 24..92 score: 2.1
IPR005818	Histone H1/H5	SMART	SM00526	no description	coord: 22..88 score: 5.8
IPR005819	Histone H5	PRINTS	PR00624	HISTONEH5	coord: 11..32 score: 4.5e-14coord: 38..55 score: 4.5e-14coord: 119..133 score: 4.5e-14coord: 149..166 score: 4.5
IPR011991	Winged helix-turn-helix transcription repressor DNA-binding	GENE3D	1.10.10.10	no description	coord: 20..102 score: 1.1
None	No IPR available	PANTHER	PTHR11467	HISTONE H1/H5	coord: 12..179 score: 3.1
None	No IPR available	SEG	seg	seg	coord: 11..22 score: NAcoord: 92..182 score
None	No IPR available	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 19..100 score: 6.3
None	No IPR available	SEG	seg	seg	coord: 6..38 score: NAcoord: 40..56 score
None	No IPR available	SEG	seg	seg	coord: 3..15 score: NAcoord: 23..33 score: NAcoord: 48..75 score
None	No IPR available	SEG	seg	seg	coord: 15..75 score: NAcoord: 77..105 score

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>Pisum_sativum_v1_Contig2734 ID=Pisum_sativum_v1_Contig2734; Name=Pisum_sativum_v1_Contig2734; organism=Pisum sativum; type=contig; length=725bp
CCATTTTCAGCCATGTCGACCGTCGCTCAAACCAAGCCCAAGAAAACCGC
TGCAGCAAAGAAGCCACTTTCTCATCCCACTTTCGCTGAGATGATAACTG
AAGCAATCACAAGCCTGAAAGAAAGAACCGGTTCAAGCCAATATGCTATA
ACAAAATTCATCGAAGAGAAATACAAGGACTTACCTCCAACTTACCGTAA
GCTTGTTCTCCTCCATCTCAAGAAATCCGTCGCTTCAGGAAAGCTTGTCA
AGGTGAAAAGCTCCTTCAAACTCGCTCCGGCAGCCGCAAAAACTGCTCCG
GCCAAGACATCGGCTGCTACCAAAGCTCCTAAAGCTGTTACCAAGCCAAG
CGCTAAAGCTGTCACAAAGCCCAAGGCTAAAGCTGCTGGGAAGCCGAAAG
CTGTTGCGAAGCCAAAGGCTAAGAGCGTGAAGGCTACTCCGGTGAAGAAG
GCTGTTGCTAAGAAGGTTGTGAAGAAGGCGAAGAGCGTTAAAAGTCCGGC
GAAGAAGGTGAAGAGCGTTAAAACTCCGGTGAAGAAGGCTAAGAAGTGAG
GGATTAGGGTTTGATTTGATTTGATTGGGTTTTTTAGTTATGTGTGTAAT
GTTATGGTTTATTATTATTATGGTTTGGTTTTAGAAAGATTAGAGATGAA
AATTAGTGTTAGGAGGTTGTTGCTGTAAATTGTTTAGGAGAAACACATCT
TGTGTTCTTTGTACTCGACACCGTC

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **Cellular Component**
Term	Definition
GO:0000786	nucleosome
GO:0005634	nucleus

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006334	nucleosome assembly

Vocabulary: **INTERPRO**
Term	Definition
IPR005818	Histone_H1/H5_H15
IPR005819	H1/H5
IPR011991	ArsR-like_HTH

Search form

Pisum_sativum_v1_Contig2734