Pisum_sativum_v1_Contig2775

Contig Overview


Name	Pisum_sativum_v1_Contig2775
Unique Name	Pisum_sativum_v1_Contig2775
Type	contig
Organism	Pisum sativum (pea)
Sequence length	484

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
CD860907	EST	CD860907:1..304 +	Pisum sativum unigene v1	n/a
FG535326	EST	FG535326:43..484 -	Pisum sativum unigene v1	n/a

Unigenes

This contig is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Pisum sativum unigene v1	Pisum sativum unigene v1	contig

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Pisum sativum unigene v1	2010-12-27
KEGG analysis for Pisum sativum unigene v1	2011-01-05
Homology Analysis: Pisum sativum unigene v1 vs Trembl	2010-12-28
Homology Analysis: Pisum sativum unigene v1 vs Swissprot	2010-12-28
Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide	2011-02-03
InterProScan analysis for Pisum sativum unigene v1	2010-12-29

Relationships

The following EST feature(s) are a part of this contig:


Feature Name	Unique Name	Species	Type
CD860907	CD860907	Pisum sativum	EST
FG535326	FG535326	Pisum sativum	EST

Homology

[Close]

BLAST of Pisum_sativum_v1_Contig2775 vs. SwissProt
Match: KPPR_WHEAT (Phosphoribulokinase, chloroplastic OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 6.195e-38
Identity = 77/88 (87.50%), Postives = 81/88 (92.05%), Query Frame = -3

Query:  219 TYKGNEVSVVEMDGQFDRLDELIYVESHLSNLSSKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLFEQIVASRAETPVGAAK 482
            TY G EVSV+EMDGQFDRLDELIYVESHLSNLS+KFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDL+EQI+A RA  P  AAK
Sbjct:  316 TYFGQEVSVLEMDGQFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLYEQIIAERAGVPAEAAK 403

[Close]

BLAST of Pisum_sativum_v1_Contig2775 vs. SwissProt
Match: KPPR_MESCR (Phosphoribulokinase, chloroplastic OS=Mesembryanthemum crystallinum PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 8.091e-38
Identity = 75/89 (84.27%), Postives = 81/89 (91.01%), Query Frame = -3

Query:  216 TYKGNEVSVVEMDGQFDRLDELIYVESHLSNLSSKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLFEQIVASRAETPVGAAKA 482
            TY GNEV+V+EMDGQFDRLDELIYVESHLSNLS+KFYGEVTQQMLKH DFPGSNNGTGLFQTIVGLKIRDLFEQ++AS+   P  A KA
Sbjct:  309 TYFGNEVTVLEMDGQFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHQDFPGSNNGTGLFQTIVGLKIRDLFEQLIASKTAAPAAATKA 397

[Close]

BLAST of Pisum_sativum_v1_Contig2775 vs. SwissProt
Match: KPPR_SPIOL (Phosphoribulokinase, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 5.799e-36
Identity = 73/89 (82.02%), Postives = 80/89 (89.89%), Query Frame = -3

Query:  216 TYKGNEVSVVEMDGQFDRLDELIYVESHLSNLSSKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLFEQIVASRAETPVGAAKA 482
            T+ GNEV+VVEMDG FDRLDELIYVESHLSNLS+KFYGEVTQQMLKH +FPGSNNGTG FQTI+GLKIRDLFEQ+VASR+     AAKA
Sbjct:  314 TFYGNEVTVVEMDGMFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHQNFPGSNNGTGFFQTIIGLKIRDLFEQLVASRSTATATAAKA 402

[Close]

BLAST of Pisum_sativum_v1_Contig2775 vs. SwissProt
Match: KPPR_ARATH (Phosphoribulokinase, chloroplastic OS=Arabidopsis thaliana GN=At1g32060 PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 1.428e-34
Identity = 73/89 (82.02%), Postives = 82/89 (92.13%), Query Frame = -3

Query:  216 TYKGNEVSVVEMDGQFDRLDELIYVESHLSNLSSKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLFEQIVASRAETPVGAAKA 482
            +Y  +EVSV+EMDGQFDRLDELIYVESHLSNLS+KFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDL+EQ++A++A T    AKA
Sbjct:  308 SYFDHEVSVLEMDGQFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLYEQLIANKA-TARAEAKA 395

[Close]

BLAST of Pisum_sativum_v1_Contig2775 vs. SwissProt
Match: KPPR_CHLRE (Phosphoribulokinase, chloroplastic OS=Chlamydomonas reinhardtii GN=PRKA PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 2.360e-29
Identity = 59/76 (77.63%), Postives = 72/76 (94.74%), Query Frame = -3

Query:  255 TYKGNEVSVVEMDGQFDRLDELIYVESHLSNLSSKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLFEQIV 482
            T+ G EVSV+EMDGQFD+L+ELIYVESHLSN S+KFYGE+TQQMLK++ FPGSNNGTGLFQTIVGLK+R+++E+IV
Sbjct:  293 TWYGQEVSVLEMDGQFDKLEELIYVESHLSNTSAKFYGEITQQMLKNSGFPGSNNGTGLFQTIVGLKVREVYERIV 368

[Close]

BLAST of Pisum_sativum_v1_Contig2775 vs. SwissProt
Match: KPPR_SYNY3 (Phosphoribulokinase OS=Synechocystis sp. (strain PCC 6803) GN=prk PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 9.602e-23
Identity = 43/76 (56.58%), Postives = 66/76 (86.84%), Query Frame = -3

Query:  252 YKGNEVSVVEMDGQFDRLDELIYVESHLSNLSSKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLFEQIVA 479
            + GNEVS++E+DG+F+ L+E++YVE+HLS   +K+YGE+T+ +LKH D+PG++NGTGLFQ +VGLK+R ++EQ+ A
Sbjct:  249 FMGNEVSLLEVDGRFENLEEMVYVENHLSKTGTKYYGEMTELLLKHKDYPGTDNGTGLFQVLVGLKMRKVYEQLTA 324

[Close]

BLAST of Pisum_sativum_v1_Contig2775 vs. TrEMBL
Match: P93681_PEA (Phosphoribulokinase (Fragment) OS=Pisum sativum GN=prk PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 2.827e-43
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = -3

Query:  216 TYKGNEVSVVEMDGQFDRLDELIYVESHLSNLSSKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLFEQIVASRAETPVGAAKA 482
            TYKGNEVSVVEMDGQFDRLDELIYVESHLSNLSSKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLFEQIVASRAETPVGAAKA
Sbjct:  264 TYKGNEVSVVEMDGQFDRLDELIYVESHLSNLSSKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLFEQIVASRAETPVGAAKA 352

[Close]

BLAST of Pisum_sativum_v1_Contig2775 vs. TrEMBL
Match: B7FJJ0_MEDTR (Phosphoribulokinase OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 2.827e-43
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = -3

Query:  216 TYKGNEVSVVEMDGQFDRLDELIYVESHLSNLSSKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLFEQIVASRAETPVGAAKA 482
            TYKGNEVSVVEMDGQFDRLDELIYVESHLSNLSSKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLFEQIVASRAETPVGAAKA
Sbjct:  323 TYKGNEVSVVEMDGQFDRLDELIYVESHLSNLSSKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLFEQIVASRAETPVGAAKA 411

[Close]

BLAST of Pisum_sativum_v1_Contig2775 vs. TrEMBL
Match: B7FIZ8_MEDTR (Phosphoribulokinase OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 2.827e-43
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = -3

Query:  216 TYKGNEVSVVEMDGQFDRLDELIYVESHLSNLSSKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLFEQIVASRAETPVGAAKA 482
            TYKGNEVSVVEMDGQFDRLDELIYVESHLSNLSSKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLFEQIVASRAETPVGAAKA
Sbjct:  133 TYKGNEVSVVEMDGQFDRLDELIYVESHLSNLSSKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLFEQIVASRAETPVGAAKA 221

[Close]

BLAST of Pisum_sativum_v1_Contig2775 vs. TrEMBL
Match: B9MUA4_POPTR (Phosphoribulokinase OS=Populus trichocarpa GN=POPTRDRAFT_740043 PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 4.224e-39
Identity = 80/89 (89.89%), Postives = 86/89 (96.63%), Query Frame = -3

Query:  216 TYKGNEVSVVEMDGQFDRLDELIYVESHLSNLSSKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLFEQIVASRAETPVGAAKA 482
            TY G+EVS++EMDGQFDRLDELIYVESHLSNLS+KFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLFEQI+ASRA+TPV A KA
Sbjct:  317 TYYGHEVSILEMDGQFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLFEQIIASRAKTPVEATKA 405

[Close]

BLAST of Pisum_sativum_v1_Contig2775 vs. TrEMBL
Match: B9GZT5_POPTR (Phosphoribulokinase OS=Populus trichocarpa GN=POPTRDRAFT_712554 PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 1.605e-38
Identity = 80/88 (90.91%), Postives = 85/88 (96.59%), Query Frame = -3

Query:  216 YKGNEVSVVEMDGQFDRLDELIYVESHLSNLSSKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLFEQIVASRAETPVGAAKA 479
            Y G+EVSV+EMDGQFDRLDELIYVESHLSN+S+KFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLFEQIVASRA+TPV A KA
Sbjct:  318 YYGHEVSVLEMDGQFDRLDELIYVESHLSNISTKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLFEQIVASRAKTPVEATKA 405

[Close]

BLAST of Pisum_sativum_v1_Contig2775 vs. TrEMBL
Match: A9PGT2_POPTR (Phosphoribulokinase OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 1.605e-38
Identity = 80/88 (90.91%), Postives = 85/88 (96.59%), Query Frame = -3

Query:  216 YKGNEVSVVEMDGQFDRLDELIYVESHLSNLSSKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLFEQIVASRAETPVGAAKA 479
            Y G+EVSV+EMDGQFDRLDELIYVESHLSN+S+KFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLFEQIVASRA+TPV A KA
Sbjct:  180 YYGHEVSVLEMDGQFDRLDELIYVESHLSNISTKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLFEQIVASRAKTPVEATKA 267

[Close]

BLAST of Pisum_sativum_v1_Contig2775 vs. TrEMBL
Match: C6TL29_SOYBN (Phosphoribulokinase OS=Glycine max PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 7.966e-38
Identity = 80/89 (89.89%), Postives = 85/89 (95.51%), Query Frame = -3

Query:  216 TYKGNEVSVVEMDGQFDRLDELIYVESHLSNLSSKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLFEQIVASRAETPVGAAKA 482
            TY GNEV VVEMDGQFDRLDELIYVESHLSNLS+KFYGEVTQQMLKHADFPGSNNGTG FQTIVGLKIRDL+EQ++AS+AETPV AAKA
Sbjct:  320 TYYGNEVLVVEMDGQFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGFFQTIVGLKIRDLYEQLIASKAETPV-AAKA 407

[Close]

BLAST of Pisum_sativum_v1_Contig2775 vs. TrEMBL
Match: D7SYP0_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_109.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00011555001 PE=4 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.040e-37
Identity = 77/89 (86.52%), Postives = 85/89 (95.51%), Query Frame = -3

Query:  216 TYKGNEVSVVEMDGQFDRLDELIYVESHLSNLSSKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLFEQIVASRAETPVGAAKA 482
            TY G+EVSV+EMDGQFDRLDELIYVESHLSN+S+KFYGE+TQQ+LKH+DFPGSNNGTGLFQTIVGLKIRDLFEQIVASRA TP+ A KA
Sbjct:  179 TYYGHEVSVLEMDGQFDRLDELIYVESHLSNISTKFYGEITQQLLKHSDFPGSNNGTGLFQTIVGLKIRDLFEQIVASRAATPLEATKA 267

[Close]

BLAST of Pisum_sativum_v1_Contig2775 vs. TrEMBL
Match: A5BE19_VITVI (Phosphoribulokinase OS=Vitis vinifera GN=VITISV_011191 PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.040e-37
Identity = 77/89 (86.52%), Postives = 85/89 (95.51%), Query Frame = -3

Query:  216 TYKGNEVSVVEMDGQFDRLDELIYVESHLSNLSSKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLFEQIVASRAETPVGAAKA 482
            TY G+EVSV+EMDGQFDRLDELIYVESHLSN+S+KFYGE+TQQ+LKH+DFPGSNNGTGLFQTIVGLKIRDLFEQIVASRA TP+ A KA
Sbjct:  320 TYYGHEVSVLEMDGQFDRLDELIYVESHLSNISTKFYGEITQQLLKHSDFPGSNNGTGLFQTIVGLKIRDLFEQIVASRAATPLEATKA 408

[Close]

BLAST of Pisum_sativum_v1_Contig2775 vs. TrEMBL
Match: B8A064_MAIZE (Phosphoribulokinase OS=Zea mays PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 1.775e-37
Identity = 79/87 (90.80%), Postives = 82/87 (94.25%), Query Frame = -3

Query:  219 YKGNEVSVVEMDGQFDRLDELIYVESHLSNLSSKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLFEQIVASRAETPVGAAK 479
            Y GNEVSV+EMDGQFDRLDELIYVESHLSNLS+KFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDL+EQIVA RA  PV AAK
Sbjct:  328 YFGNEVSVLEMDGQFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLYEQIVAERAGAPVEAAK 414

[Close]

BLAST of Pisum_sativum_v1_Contig2775 vs. TAIR peptide
Match: AT1G32060.1 (| Symbols: PRK | phosphoribulokinase | chr1:11532668-11534406 FORWARD LENGTH=395)

HSP 1 Score: 145.206 bits (365), Expect = 1.649e-35
Identity = 73/89 (82.02%), Postives = 82/89 (92.13%), Query Frame = -3

Query:  216 TYKGNEVSVVEMDGQFDRLDELIYVESHLSNLSSKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLFEQIVASRAETPVGAAKA 482
            +Y  +EVSV+EMDGQFDRLDELIYVESHLSNLS+KFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDL+EQ++A++A T    AKA
Sbjct:  308 SYFDHEVSVLEMDGQFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLYEQLIANKA-TARAEAKA 395

The following BLAST results are available for this feature:

BLAST of Pisum_sativum_v1_Contig2775 vs. SwissProt
BLAST of Pisum_sativum_v1_Contig2775 vs. TrEMBL
BLAST of Pisum_sativum_v1_Contig2775 vs. TAIR peptide

BLAST of Pisum_sativum_v1_Contig2775 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Swissprot)
Total hits: 6


Match Name	E-value	Identity	Description
KPPR_WHEAT	6.195e-38	87.50	Phosphoribulokinase, chloroplastic OS=Triticum aes...	[more]
KPPR_MESCR	8.091e-38	84.27	Phosphoribulokinase, chloroplastic OS=Mesembryanth...	[more]
KPPR_SPIOL	5.799e-36	82.02	Phosphoribulokinase, chloroplastic OS=Spinacia ole...	[more]
KPPR_ARATH	1.428e-34	82.02	Phosphoribulokinase, chloroplastic OS=Arabidopsis ...	[more]
KPPR_CHLRE	2.360e-29	77.63	Phosphoribulokinase, chloroplastic OS=Chlamydomona...	[more]
KPPR_SYNY3	9.602e-23	56.58	Phosphoribulokinase OS=Synechocystis sp. (strain P...	[more]

BLAST of Pisum_sativum_v1_Contig2775 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
P93681_PEA	2.827e-43	100.00	Phosphoribulokinase (Fragment) OS=Pisum sativum GN...	[more]
B7FJJ0_MEDTR	2.827e-43	100.00	Phosphoribulokinase OS=Medicago truncatula PE=2 SV...	[more]
B7FIZ8_MEDTR	2.827e-43	100.00	Phosphoribulokinase OS=Medicago truncatula PE=2 SV...	[more]
B9MUA4_POPTR	4.224e-39	89.89	Phosphoribulokinase OS=Populus trichocarpa GN=POPT...	[more]
B9GZT5_POPTR	1.605e-38	90.91	Phosphoribulokinase OS=Populus trichocarpa GN=POPT...	[more]
A9PGT2_POPTR	1.605e-38	90.91	Phosphoribulokinase OS=Populus trichocarpa PE=2 SV...	[more]
C6TL29_SOYBN	7.966e-38	89.89	Phosphoribulokinase OS=Glycine max PE=2 SV=1	[more]
D7SYP0_VITVI	1.040e-37	86.52	Whole genome shotgun sequence of line PN40024, sca...	[more]
A5BE19_VITVI	1.040e-37	86.52	Phosphoribulokinase OS=Vitis vinifera GN=VITISV_01...	[more]
B8A064_MAIZE	1.775e-37	90.80	Phosphoribulokinase OS=Zea mays PE=2 SV=1	[more]

BLAST of Pisum_sativum_v1_Contig2775 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide)
Total hits: 1


Match Name	E-value	Identity	Description
AT1G32060.1	1.649e-35	82.02	\| Symbols: PRK \| phosphoribulokinase \| chr1:115326...	[more]

InterPro

Analysis Name: InterProScan analysis for Pisum sativum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SEG	seg	seg	coord: 3..15 score
None	No IPR available	PANTHER	PTHR10285	URIDINE KINASE RELATED	coord: 1..79 score: 5.6
None	No IPR available	PANTHER	PTHR10285:SF5	PHOSPHORIBULOSE KINASE	coord: 1..79 score: 5.6

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>Pisum_sativum_v1_Contig2775 ID=Pisum_sativum_v1_Contig2775; Name=Pisum_sativum_v1_Contig2775; organism=Pisum sativum; type=contig; length=484bp
ACCTGAAATCTCAGTCTTGTTTCTCCTCCTCTATATTATAAGTAACAACA
TATTACATTACATAAATAAATACAAGCAAAGTCTTTTCATACACAAAACA
ACATACAATACAGGAATTGTGGAATACACAAAAAGTAAGAAATTATTTTT
TCAGAATAAAATTCAATTACTCCCTTTTCAATAATATTATGTATATATAA
GGCAAGTTCTTCCTAAGCTTTAGCAGCTCCTACTGGAGTCTCAGCCCTGC
TTGCTACTATCTGCTCAAACAAATCTCTTATCTTCAAACCAACAATGGTT
TGAAACAGGCCTGTTCCATTGTTGCTACCAGGAAAATCAGCATGCTTCAA
CATCTGTTGAGTAACTTCTCCATAGAATTTGGATGATAAGTTGCTTAAAT
GGCTCTCAACATATATCAGTTCATCTAGTCTGTCAAATTGTCCGTCCATT
TCCACAACTGACACCTCGTTTCCTTTGTATGTTT

Search form

Pisum_sativum_v1_Contig2775