Pisum_sativum_v1_Contig2827

Contig Overview


Name	Pisum_sativum_v1_Contig2827
Unique Name	Pisum_sativum_v1_Contig2827
Type	contig
Organism	Pisum sativum (pea)
Sequence length	379

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
CD860497	EST	CD860497:1..371 -	Pisum sativum unigene v1	n/a
AM161979	EST	AM161979:47..379 +	Pisum sativum unigene v1	n/a

Unigenes

This contig is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Pisum sativum unigene v1	Pisum sativum unigene v1	contig

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Pisum sativum unigene v1	2010-12-27
Homology Analysis: Pisum sativum unigene v1 vs Trembl	2010-12-28
Homology Analysis: Pisum sativum unigene v1 vs Swissprot	2010-12-28
Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide	2011-02-03
InterProScan analysis for Pisum sativum unigene v1	2010-12-29

Relationships

The following EST feature(s) are a part of this contig:


Feature Name	Unique Name	Species	Type
CD860497	CD860497	Pisum sativum	EST
AM161979	AM161979	Pisum sativum	EST

Homology

[Close]

BLAST of Pisum_sativum_v1_Contig2827 vs. SwissProt
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 2.895e-34
Identity = 69/124 (55.65%), Postives = 81/124 (65.32%), Query Frame = -1

Query:    2 TTTAAVTSHFFGTHLRKPASNIGRIRAFFNIGIXXXXXXXXXXXXVR-QPESDGLVWFPGAQPPEWLDGTMIGDRGFDPLGFAKPAEYLQFDLDSLDQNLAKNLAGDVIGTRVEAGEVKPTPFQ 370
            TTTAA  S  FG  ++ P    GR++A F                 + Q + D LVWFPGA PPEWLDG+MIGDRGFDP G  KPAEYLQ+D D LDQNLAKN+AGD+IG   E+ E+KPTPFQ
Sbjct:    3 TTTAAAASGIFGIRIQDPRPGTGRVQARFGFSFGKKKPAPPPKKSRQVQDDGDRLVWFPGANPPEWLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQESSEIKPTPFQ 126

[Close]

BLAST of Pisum_sativum_v1_Contig2827 vs. SwissProt
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.817e-28
Identity = 67/127 (52.76%), Postives = 79/127 (62.20%), Query Frame = -1

Query:    2 MATTTTAAVTSHFFGTHLRKP-ASNIGRIRAFFNIGIXXXXXXXXXXXXVRQPESDGLVWFPGAQPPEWLDGTMIGDRGFDPLGFAKPAEYLQFDLDSLDQNLAKNLAGDVIGTRVEAGEVKPTPFQ 379
            MA T+TAA  S   GT +    +SN  R  A F  G               +P     +WFPGA+ PE+LDG+++GD GFDP G  KPAEYLQFDLDSLDQNLAKNL G+VIGTR EA + K TPFQ
Sbjct:    1 MAATSTAAAASSIMGTRVVSDISSNSSRFTARFGFGTKKASPKKAKTVISDRP-----LWFPGAKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQ 122

[Close]

BLAST of Pisum_sativum_v1_Contig2827 vs. SwissProt
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 3.100e-28
Identity = 66/128 (51.56%), Postives = 78/128 (60.94%), Query Frame = -1

Query:    2 ATTTTAAVTSHFFGTHLRK---PASNIGRIRAFFNIGIXXXXXXXXXXXXVRQPESDGLVWFPGAQPPEWLDGTMIGDRGFDPLGFAKPAEYLQFDLDSLDQNLAKNLAGDVIGTRVEAGEVKPTPFQ 376
            AT+  AA  S   GT +     P S  GR  A F  G              +   +D  +W+PGA  P+WLDG+++GD GFDP G  KPAEYLQFD+DSLDQNLAKNLAGDVIGTR EA + K TPFQ
Sbjct:    3 ATSAAAAAASSIMGTRVAPGIHPGS--GRFTAVFGFG---KKKAAPKKSAKKTVTTDRPLWYPGAISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPFQ 125

[Close]

BLAST of Pisum_sativum_v1_Contig2827 vs. SwissProt
Match: CB29_CHLRE (Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii GN=Lhcb4 PE=1 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 4.067e-12
Identity = 32/61 (52.46%), Postives = 41/61 (67.21%), Query Frame = -1

Query:   50 RQPESDGLVWFPGAQPPEWLDGTMIGDRGFDPLGFAKPAEYLQFDLDSLDQNLAKNLAGDV 232
            R+ + D L W P    PEWLDG++ GDRGFDPLG +KP+E++   +D  DQN AKN  G V
Sbjct:   45 RKYQGDAL-WLPNTTRPEWLDGSLPGDRGFDPLGLSKPSEFVVIGVDENDQNAAKNNKGSV 104

[Close]

BLAST of Pisum_sativum_v1_Contig2827 vs. SwissProt
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 1.354e-7
Identity = 22/42 (52.38%), Postives = 30/42 (71.43%), Query Frame = -1

Query:   98 ESDGLVWFPGAQPPEWLDGTMIGDRGFDPLGFAKPAEYLQFD 223
            + D  +WFPG+ PPEWLDG++ GD GFDPLG     E L+++
Sbjct:   62 DPDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWN 103

[Close]

BLAST of Pisum_sativum_v1_Contig2827 vs. SwissProt
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 54.6842 bits (130), Expect = 1.768e-7
Identity = 35/100 (35.00%), Postives = 48/100 (48.00%), Query Frame = -1

Query:   98 ATTTTAAVTSHFFGTHLRKPASNIGRIRAFFNIGIXXXXXXXXXXXXVRQP-------ESDGLVWFPGAQPPEWLDGTMIGDRGFDPLGFAKPAEYLQFD 376
            A++T AAV   F     R+  S +G  +A F  G              R         + D  +WFPG+ PP WLDG++ GD GFDPLG A   E L+++
Sbjct:    6 ASSTIAAVA--FSSPSSRRNGSIVGTTKASFLGGRRLRVSKYSTTPTARSATTVCVAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWN 103

[Close]

BLAST of Pisum_sativum_v1_Contig2827 vs. TrEMBL
Match: B9SLN2_RICCO (Chlorophyll A/B binding protein, putative OS=Ricinus communis GN=RCOM_0593190 PE=4 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 1.776e-37
Identity = 80/132 (60.61%), Postives = 90/132 (68.18%), Query Frame = -1

Query:    2 MATTTTAAVT--SHFFGTHLRKPASNIGRIRAFFNIGIXXXXXXXXXXXXVRQ----PESDGLVWFPGAQPPEWLDGTMIGDRGFDPLGFAKPAEYLQFDLDSLDQNLAKNLAGDVIGTRVEAGEVKPTPFQ 379
            MATT TAA T  SHFF T  + P   +G+I+A F  G              ++    P  D LVWFPGA PPEWLDGTM+GDRGFDP G  KPAEYLQF+LDSLDQNLAKN+AGD+IG RVE  EVKPTPFQ
Sbjct:    1 MATTATAAATAASHFFRTRTQNPKPKVGKIQARFGFGGFGGFGTKKSSPPPKKTAPKPVEDRLVWFPGANPPEWLDGTMVGDRGFDPFGLGKPAEYLQFELDSLDQNLAKNVAGDIIGVRVEPNEVKPTPFQ 132

[Close]

BLAST of Pisum_sativum_v1_Contig2827 vs. TrEMBL
Match: B9HHN0_POPTR (Light-harvesting complex II protein Lhcb8 OS=Populus trichocarpa GN=Lhcb8 PE=4 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 9.744e-36
Identity = 75/122 (61.48%), Postives = 82/122 (67.21%), Query Frame = -1

Query:    2 TTAAVTSHFFGTHLRKPASNIGRIRAFFNIGIXXXXXXXXXXXXVRQPESDGLVWFPGAQPPEWLDGTMIGDRGFDPLGFAKPAEYLQFDLDSLDQNLAKNLAGDVIGTRVEAGEVKPTPFQ 367
            TTA   S+F GT  +    N G+I+A F  G               +   D LVWFPGA PPEWLDGTM+GDRGFDP    KPAEYLQFDLDSLDQNLAKNLAGDVIG RV+A EVKPTPFQ
Sbjct:    4 TTAVAASYFSGTRTQYTKQNPGKIQALFGFGTKKSPPPPPPKKSSPKQFEDRLVWFPGASPPEWLDGTMVGDRGFDPFALGKPAEYLQFDLDSLDQNLAKNLAGDVIGVRVDATEVKPTPFQ 125

[Close]

BLAST of Pisum_sativum_v1_Contig2827 vs. TrEMBL
Match: B7FIZ5_MEDTR (Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 6.316e-35
Identity = 76/125 (60.80%), Postives = 85/125 (68.00%), Query Frame = -1

Query:    2 ATTTTAAVTSHFFGTHLRKPASNIGRIRAFFNIGIXXXXXXXXXXXXVRQPESDGLVWFPGAQPPEWLDGTMIGDRGFDPLGFAKPAEYLQFDLDSLDQNLAKNLAGDVIGTRVEAGEVKPTPFQ 376
            A T TAA TS F GT LR+  SN GRI+A F  G                P +D  +WFPGA+ PEWLDG+++GD GFDP G  KPAEYLQFDLDSLDQNLAKNLAGDVIGTR E  +VK TPFQ
Sbjct:    3 AATATAAATSSFIGTRLREVQSNSGRIQARFGFG---KKKAAPKKPSRSSPSTDRPLWFPGAKSPEWLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRTEFADVKSTPFQ 124

[Close]

BLAST of Pisum_sativum_v1_Contig2827 vs. TrEMBL
Match: A9PK34_9ROSI (Putative uncharacterized protein OS=Populus trichocarpa x Populus deltoides PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 6.983e-34
Identity = 72/122 (59.02%), Postives = 80/122 (65.57%), Query Frame = -1

Query:    2 TTAAVTSHFFGTHLRKPASNIGRIRAFFNIGIXXXXXXXXXXXXVRQPESDGLVWFPGAQPPEWLDGTMIGDRGFDPLGFAKPAEYLQFDLDSLDQNLAKNLAGDVIGTRVEAGEVKPTPFQ 367
            T A   S+F  T  +    N G+I+A F  G               +   + LVWFPGA PPEWLDGTM+GDRGFDP    KPAEYLQFDLDSLDQNLAKNLAGDVIG RV+A EVKPTPFQ
Sbjct:    4 TIAVAASYFSATRTQYTKQNPGKIQALFGFGTKKSPPPPPPKKSSPKQFEERLVWFPGASPPEWLDGTMVGDRGFDPFALGKPAEYLQFDLDSLDQNLAKNLAGDVIGVRVDATEVKPTPFQ 125

[Close]

BLAST of Pisum_sativum_v1_Contig2827 vs. TrEMBL
Match: B9SQ36_RICCO (Chlorophyll A/B binding protein, putative OS=Ricinus communis GN=RCOM_0644360 PE=4 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.191e-33
Identity = 72/126 (57.14%), Postives = 86/126 (68.25%), Query Frame = -1

Query:    2 MATTTTAAVTSHFFGTHLRKPASNIGRIRAFFNIGIXXXXXXXXXXXXVRQPESDGLVWFPGAQPPEWLDGTMIGDRGFDPLGFAKPAEYLQFDLDSLDQNLAKNLAGDVIGTRVEAGEVKPTPFQ 379
            MAT+T AA  S F GT L    SN GR++A F  G               +P SD  +W+PGA+ PEWLDG+++GD GFDP G  KPAEYLQF+LDSLDQNLAKN+AGD+IGTR EA +VK TPFQ
Sbjct:    1 MATSTAAAAASSFMGTRLPDVYSNSGRVQARFGFGTKKSAPKRSA-----KPTSDRPLWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNIAGDIIGTRTEAADVKSTPFQ 121

[Close]

BLAST of Pisum_sativum_v1_Contig2827 vs. TrEMBL
Match: A5C288_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_010727 PE=4 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.008e-32
Identity = 76/128 (59.38%), Postives = 84/128 (65.62%), Query Frame = -1

Query:    2 MATTTTAAV--TSHFFGTHLRKPASNIGRIRAFFNIGIXXXXXXXXXXXXVRQPESDGLVWFPGAQPPEWLDGTMIGDRGFDPLGFAKPAEYLQFDLDSLDQNLAKNLAGDVIGTRVEAGEVKPTPFQ 379
            MATTT AA   TS F GT L    SN GR++A F  G               +  SD  +WFPGA  PEWLDGT++GD GFDP G  KPAEYLQ+D DSLDQNLAKN+AGDVIGTR E GEVK TPFQ
Sbjct:    1 MATTTAAAAAATSSFMGTRLPDVHSNTGRVQARFGFG-----RKKAPAKKAAKRVSDRPLWFPGAVAPEWLDGTLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNIAGDVIGTRFEGGEVKSTPFQ 123

[Close]

BLAST of Pisum_sativum_v1_Contig2827 vs. TrEMBL
Match: D7LEF5_ARALY (LHCB4.3 OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_483050 PE=4 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.317e-32
Identity = 68/124 (54.84%), Postives = 81/124 (65.32%), Query Frame = -1

Query:    2 TTTAAVTSHFFGTHLRKPASNIGRIRAFFNIGIXXXXXXXXXXXXVR-QPESDGLVWFPGAQPPEWLDGTMIGDRGFDPLGFAKPAEYLQFDLDSLDQNLAKNLAGDVIGTRVEAGEVKPTPFQ 370
            TTTAA  S  FG  ++ P    GR++A F                 + Q + D LVWFPGA PPEWLDG+MIGDRGFDP G  KPAEYLQ+D D LDQNLAKN+AGD+IG   ++ E+KPTPFQ
Sbjct:    3 TTTAAAASGIFGIRIQDPRPGTGRVQARFGFSFGKKKPAPPPKKSRQVQDDGDRLVWFPGANPPEWLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQDSSEIKPTPFQ 126

[Close]

BLAST of Pisum_sativum_v1_Contig2827 vs. TrEMBL
Match: A9PJF0_9ROSI (Putative uncharacterized protein OS=Populus trichocarpa x Populus deltoides PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 2.484e-31
Identity = 71/126 (56.35%), Postives = 83/126 (65.87%), Query Frame = -1

Query:    2 MATTTTAAVTSHFFGTHLRKPASNIGRIRAFFNIGIXXXXXXXXXXXXVRQPESDGLVWFPGAQPPEWLDGTMIGDRGFDPLGFAKPAEYLQFDLDSLDQNLAKNLAGDVIGTRVEAGEVKPTPFQ 379
            MATTT AA TS F GT L    SN GRI+A F  G                   D  +W+PGA+ PE+LDG+++GD GFDP G  +PAEYLQF+LDSLDQNLAKNLAGD+IGTR E  +VK TPFQ
Sbjct:    1 MATTTAAAATSSFIGTRLPDVYSNAGRIQARFGFGKKAPKKSIKTIP-------DRPLWYPGAKAPEYLDGSLVGDYGFDPFGLGRPAEYLQFELDSLDQNLAKNLAGDIIGTRTEVSDVKSTPFQ 119

[Close]

BLAST of Pisum_sativum_v1_Contig2827 vs. TrEMBL
Match: B9HCM1_POPTR (Light-harvesting complex II protein Lhcb4 OS=Populus trichocarpa GN=Lhcb4 PE=4 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 3.244e-31
Identity = 71/126 (56.35%), Postives = 84/126 (66.67%), Query Frame = -1

Query:    2 MATTTTAAVTSHFFGTHLRKPASNIGRIRAFFNIGIXXXXXXXXXXXXVRQPESDGLVWFPGAQPPEWLDGTMIGDRGFDPLGFAKPAEYLQFDLDSLDQNLAKNLAGDVIGTRVEAGEVKPTPFQ 379
            MA TT AA TS F GT L    SN GRI+A F  G             ++    D  +W+PGA+ PE+LDG+++GD GFDP G  KPAEYLQF+LDSLDQNLAKNLAGD+IGTR E  +VK TPFQ
Sbjct:    1 MAATTAAAATSSFMGTRLPDIYSNSGRIQARFGFG-----GKKAPKKSIKPSTPDRPLWYPGAKAPEYLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNLAGDIIGTRTEFADVKSTPFQ 121

[Close]

BLAST of Pisum_sativum_v1_Contig2827 vs. TrEMBL
Match: A9PIZ2_9ROSI (Putative uncharacterized protein OS=Populus trichocarpa x Populus deltoides PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 3.244e-31
Identity = 71/126 (56.35%), Postives = 84/126 (66.67%), Query Frame = -1

Query:    2 MATTTTAAVTSHFFGTHLRKPASNIGRIRAFFNIGIXXXXXXXXXXXXVRQPESDGLVWFPGAQPPEWLDGTMIGDRGFDPLGFAKPAEYLQFDLDSLDQNLAKNLAGDVIGTRVEAGEVKPTPFQ 379
            MA TT AA TS F GT L    SN GRI+A F  G             ++    D  +W+PGA+ PE+LDG+++GD GFDP G  KPAEYLQF+LDSLDQNLAKNLAGD+IGTR E  +VK TPFQ
Sbjct:    1 MAATTAAAATSSFMGTRLPDIYSNSGRIQARFGFG-----GKKAPKKSIKPSTPDRPLWYPGAKAPEYLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNLAGDIIGTRTEFADVKSTPFQ 121

[Close]

BLAST of Pisum_sativum_v1_Contig2827 vs. TAIR peptide
Match: AT2G40100.2 (| Symbols: LHCB4.3 | light harvesting complex photosystem II | chr2:16745884-16746545 FORWARD LENGTH=185)

HSP 1 Score: 143.665 bits (361), Expect = 2.715e-35
Identity = 69/124 (55.65%), Postives = 81/124 (65.32%), Query Frame = -1

Query:    2 TTTAAVTSHFFGTHLRKPASNIGRIRAFFNIGIXXXXXXXXXXXXVR-QPESDGLVWFPGAQPPEWLDGTMIGDRGFDPLGFAKPAEYLQFDLDSLDQNLAKNLAGDVIGTRVEAGEVKPTPFQ 370
            TTTAA  S  FG  ++ P    GR++A F                 + Q + D LVWFPGA PPEWLDG+MIGDRGFDP G  KPAEYLQ+D D LDQNLAKN+AGD+IG   E+ E+KPTPFQ
Sbjct:    3 TTTAAAASGIFGIRIQDPRPGTGRVQARFGFSFGKKKPAPPPKKSRQVQDDGDRLVWFPGANPPEWLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQESSEIKPTPFQ 126

[Close]

BLAST of Pisum_sativum_v1_Contig2827 vs. TAIR peptide
Match: AT2G40100.1 (| Symbols: LHCB4.3 | light harvesting complex photosystem II | chr2:16745884-16747190 FORWARD LENGTH=276)

HSP 1 Score: 143.665 bits (361), Expect = 2.715e-35
Identity = 69/124 (55.65%), Postives = 81/124 (65.32%), Query Frame = -1

Query:    2 TTTAAVTSHFFGTHLRKPASNIGRIRAFFNIGIXXXXXXXXXXXXVR-QPESDGLVWFPGAQPPEWLDGTMIGDRGFDPLGFAKPAEYLQFDLDSLDQNLAKNLAGDVIGTRVEAGEVKPTPFQ 370
            TTTAA  S  FG  ++ P    GR++A F                 + Q + D LVWFPGA PPEWLDG+MIGDRGFDP G  KPAEYLQ+D D LDQNLAKN+AGD+IG   E+ E+KPTPFQ
Sbjct:    3 TTTAAAASGIFGIRIQDPRPGTGRVQARFGFSFGKKKPAPPPKKSRQVQDDGDRLVWFPGANPPEWLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQESSEIKPTPFQ 126

[Close]

BLAST of Pisum_sativum_v1_Contig2827 vs. TAIR peptide
Match: AT3G08940.2 (| Symbols: LHCB4.2 | light harvesting complex photosystem II | chr3:2717717-2718665 FORWARD LENGTH=287)

HSP 1 Score: 124.405 bits (311), Expect = 1.704e-29
Identity = 67/127 (52.76%), Postives = 79/127 (62.20%), Query Frame = -1

Query:    2 MATTTTAAVTSHFFGTHLRKP-ASNIGRIRAFFNIGIXXXXXXXXXXXXVRQPESDGLVWFPGAQPPEWLDGTMIGDRGFDPLGFAKPAEYLQFDLDSLDQNLAKNLAGDVIGTRVEAGEVKPTPFQ 379
            MA T+TAA  S   GT +    +SN  R  A F  G               +P     +WFPGA+ PE+LDG+++GD GFDP G  KPAEYLQFDLDSLDQNLAKNL G+VIGTR EA + K TPFQ
Sbjct:    1 MAATSTAAAASSIMGTRVVSDISSNSSRFTARFGFGTKKASPKKAKTVISDRP-----LWFPGAKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQ 122

[Close]

BLAST of Pisum_sativum_v1_Contig2827 vs. TAIR peptide
Match: AT3G08940.1 (| Symbols: LHCB4.2 | light harvesting complex photosystem II | chr3:2717717-2718400 FORWARD LENGTH=227)

HSP 1 Score: 124.405 bits (311), Expect = 1.704e-29
Identity = 67/127 (52.76%), Postives = 79/127 (62.20%), Query Frame = -1

Query:    2 MATTTTAAVTSHFFGTHLRKP-ASNIGRIRAFFNIGIXXXXXXXXXXXXVRQPESDGLVWFPGAQPPEWLDGTMIGDRGFDPLGFAKPAEYLQFDLDSLDQNLAKNLAGDVIGTRVEAGEVKPTPFQ 379
            MA T+TAA  S   GT +    +SN  R  A F  G               +P     +WFPGA+ PE+LDG+++GD GFDP G  KPAEYLQFDLDSLDQNLAKNL G+VIGTR EA + K TPFQ
Sbjct:    1 MAATSTAAAASSIMGTRVVSDISSNSSRFTARFGFGTKKASPKKAKTVISDRP-----LWFPGAKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQ 122

[Close]

BLAST of Pisum_sativum_v1_Contig2827 vs. TAIR peptide
Match: AT5G01530.1 (| Symbols: LHCB4.1 | light harvesting complex photosystem II | chr5:209084-210243 FORWARD LENGTH=290)

HSP 1 Score: 123.635 bits (309), Expect = 2.907e-29
Identity = 66/128 (51.56%), Postives = 78/128 (60.94%), Query Frame = -1

Query:    2 ATTTTAAVTSHFFGTHLRK---PASNIGRIRAFFNIGIXXXXXXXXXXXXVRQPESDGLVWFPGAQPPEWLDGTMIGDRGFDPLGFAKPAEYLQFDLDSLDQNLAKNLAGDVIGTRVEAGEVKPTPFQ 376
            AT+  AA  S   GT +     P S  GR  A F  G              +   +D  +W+PGA  P+WLDG+++GD GFDP G  KPAEYLQFD+DSLDQNLAKNLAGDVIGTR EA + K TPFQ
Sbjct:    3 ATSAAAAAASSIMGTRVAPGIHPGS--GRFTAVFGFG---KKKAAPKKSAKKTVTTDRPLWYPGAISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPFQ 125

[Close]

BLAST of Pisum_sativum_v1_Contig2827 vs. TAIR peptide
Match: AT3G61470.1 (| Symbols: LHCA2 | photosystem I light harvesting complex gene 2 | chr3:22745736-22747032 FORWARD LENGTH=257)

HSP 1 Score: 55.8398 bits (133), Expect = 7.444e-9
Identity = 21/45 (46.67%), Postives = 33/45 (73.33%), Query Frame = -1

Query:   89 ESDGLVWFPGAQPPEWLDGTMIGDRGFDPLGFAKPAEYLQFDLDS 223
            + D  +WFPG+ PPEWLDG++ GD GFDPLG +   + L++++ +
Sbjct:   49 DPDRPIWFPGSTPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQA 93

[Close]

BLAST of Pisum_sativum_v1_Contig2827 vs. TAIR peptide
Match: AT1G19150.1 (| Symbols: LHCA6, LHCA2*1 | photosystem I light harvesting complex gene 6 | chr1:6612806-6613799 FORWARD LENGTH=270)

HSP 1 Score: 53.5286 bits (127), Expect = 3.694e-8
Identity = 21/39 (53.85%), Postives = 28/39 (71.79%), Query Frame = -1

Query:  101 DGLVWFPGAQPPEWLDGTMIGDRGFDPLGFAKPAEYLQF 217
            D  +WFPG+ PPEWLDG++ GD GFDPLG     + L++
Sbjct:   64 DRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPDTLKW 102

The following BLAST results are available for this feature:

BLAST of Pisum_sativum_v1_Contig2827 vs. SwissProt
BLAST of Pisum_sativum_v1_Contig2827 vs. TrEMBL
BLAST of Pisum_sativum_v1_Contig2827 vs. TAIR peptide

BLAST of Pisum_sativum_v1_Contig2827 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Swissprot)
Total hits: 6


Match Name	E-value	Identity	Description
CB4C_ARATH	2.895e-34	55.65	Chlorophyll a-b binding protein CP29.3, chloroplas...	[more]
CB4B_ARATH	1.817e-28	52.76	Chlorophyll a-b binding protein CP29.2, chloroplas...	[more]
CB4A_ARATH	3.100e-28	51.56	Chlorophyll a-b binding protein CP29.1, chloroplas...	[more]
CB29_CHLRE	4.067e-12	52.46	Chlorophyll a-b binding protein CP29 OS=Chlamydomo...	[more]
CB12_PETHY	1.354e-7	52.38	Chlorophyll a-b binding protein, chloroplastic OS=...	[more]
CB12_SOLLC	1.768e-7	35.00	Chlorophyll a-b binding protein 7, chloroplastic O...	[more]

BLAST of Pisum_sativum_v1_Contig2827 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
B9SLN2_RICCO	1.776e-37	60.61	Chlorophyll A/B binding protein, putative OS=Ricin...	[more]
B9HHN0_POPTR	9.744e-36	61.48	Light-harvesting complex II protein Lhcb8 OS=Popul...	[more]
B7FIZ5_MEDTR	6.316e-35	60.80	Putative uncharacterized protein OS=Medicago trunc...	[more]
A9PK34_9ROSI	6.983e-34	59.02	Putative uncharacterized protein OS=Populus tricho...	[more]
B9SQ36_RICCO	1.191e-33	57.14	Chlorophyll A/B binding protein, putative OS=Ricin...	[more]
A5C288_VITVI	1.008e-32	59.38	Putative uncharacterized protein OS=Vitis vinifera...	[more]
D7LEF5_ARALY	1.317e-32	54.84	LHCB4.3 OS=Arabidopsis lyrata subsp. lyrata GN=ARA...	[more]
A9PJF0_9ROSI	2.484e-31	56.35	Putative uncharacterized protein OS=Populus tricho...	[more]
B9HCM1_POPTR	3.244e-31	56.35	Light-harvesting complex II protein Lhcb4 OS=Popul...	[more]
A9PIZ2_9ROSI	3.244e-31	56.35	Putative uncharacterized protein OS=Populus tricho...	[more]

BLAST of Pisum_sativum_v1_Contig2827 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide)
Total hits: 7


Match Name	E-value	Identity	Description
AT2G40100.2	2.715e-35	55.65	\| Symbols: LHCB4.3 \| light harvesting complex phot...	[more]
AT2G40100.1	2.715e-35	55.65	\| Symbols: LHCB4.3 \| light harvesting complex phot...	[more]
AT3G08940.2	1.704e-29	52.76	\| Symbols: LHCB4.2 \| light harvesting complex phot...	[more]
AT3G08940.1	1.704e-29	52.76	\| Symbols: LHCB4.2 \| light harvesting complex phot...	[more]
AT5G01530.1	2.907e-29	51.56	\| Symbols: LHCB4.1 \| light harvesting complex phot...	[more]
AT3G61470.1	7.444e-9	46.67	\| Symbols: LHCA2 \| photosystem I light harvesting ...	[more]
AT1G19150.1	3.694e-8	53.85	\| Symbols: LHCA6, LHCA2*1 \| photosystem I light ha...	[more]

InterPro

Analysis Name: InterProScan analysis for Pisum sativum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SEG	seg	seg	coord: 52..66 score
None	No IPR available	SEG	seg	seg	coord: 71..89 score
None	No IPR available	GENE3D	1.10.3460.10	no description	coord: 58..92 score: 5.6
None	No IPR available	SEG	seg	seg	coord: 37..49 score
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 47..93 score: 3.7
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 1..92 score: 1.2
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 65..94 score: 3.2

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>Pisum_sativum_v1_Contig2827 ID=Pisum_sativum_v1_Contig2827; Name=Pisum_sativum_v1_Contig2827; organism=Pisum sativum; type=contig; length=379bp
GCTGAAACGGCGTCGGTTTCACCTCTCCAGCTTCCACCCTAGTCCCGATC
ACGTCACCAGCAAGGTTCTTAGCTAAGTTCTGGTCAAGCGAGTCAAGGTC
AAACTGCAGATACTCAGCAGGCTTCGCAAAGCCCAATGGATCAAATCCAC
GATCCCCGATCATGGTTCCGTCGAGCCATTCCGGTGGCTGTGCACCGGGA
AACCAGACTAGTCCGTCACTTTCGGGTTGTCTCACTTTCTTTACTTCCTT
TTTCTTTGGTGCTGCCTTTTTGATGCCGATGTTGAAAAAGGCGCGGATTC
TTCCAATGTTTGAGGCTGGTTTTCTAAGATGGGTGCCGAAAAAGTGTGAC
GTGACGGCGGCGGTTGTGGTGGTGGCCAT

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Vocabulary: **INTERPRO**
Term	Definition
IPR001344	Chloro_AB-bd_pln
IPR022796	Chloroa_b-bind

Search form

Pisum_sativum_v1_Contig2827