Pisum_sativum_v1_Contig2918

Contig Overview
NamePisum_sativum_v1_Contig2918
Unique NamePisum_sativum_v1_Contig2918
Typecontig
OrganismPisum sativum (pea)
Sequence length606
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
AM162037ESTAM162037:337..577 +Pisum sativum unigene v1n/a
CD859522ESTCD859522:1..606 -Pisum sativum unigene v1n/a
Unigenes
This contig is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Pisum sativum unigene v1Pisum sativum unigene v1contig
Analyses
This contig is derived from or has results from the following analyses
Analysis NameDate Performed
Pisum sativum unigene v12010-12-27
Homology Analysis: Pisum sativum unigene v1 vs Trembl2010-12-28
Homology Analysis: Pisum sativum unigene v1 vs Swissprot2010-12-28
Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide2011-02-03
InterProScan analysis for Pisum sativum unigene v12010-12-29
Relationships

The following EST feature(s) are a part of this contig:

Feature NameUnique NameSpeciesType
AM162037AM162037Pisum sativumEST
CD859522CD859522Pisum sativumEST


Homology
[Close]
BLAST of Pisum_sativum_v1_Contig2918 vs. SwissProt
Match: CID2_ARATH (Polyadenylate-binding protein-interacting protein 2 OS=Arabidopsis thaliana GN=CID2 PE=1 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 4.241e-10
Identity = 28/53 (52.83%), Postives = 35/53 (66.04%), Query Frame = 1 
Query:   61 LNPNAPMFVPLAYRTVEDFSDDWWTLVHSSPWFRDYWLRERFQDPQNQNDAFS 219
            LNPNAP+F P+ +R VEDFS  WW LV +S WFRD+WL    ++     D FS
Sbjct:   12 LNPNAPVFDPVEFREVEDFSPKWWDLVTTSKWFRDFWLSANSENEFLGGDDFS 64
[Close]
BLAST of Pisum_sativum_v1_Contig2918 vs. TrEMBL
Match: C6SYA9_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.176e-35
Identity = 76/120 (63.33%), Postives = 84/120 (70.00%), Query Frame = 1 
Query:   61 LNPNAPMFVPLAYRTVEDFSDDWWTLVHSSPWFRDYWLRERFQDPQNQNDAFSDFDMDEGDLFHVHQIEHQHEDGKDLVSLGSLKWRG-SGGWXXXXXXXXXXXXNFKPRVSPRAIHQPR 417
            LNPNAPMFVPLAYRTVEDFSD WW LVHSSPWFRDYWLRE FQDPQ QND   DFD    +L    + E + ++GK++VSLG LKWR   GGW              KP+VSPRAIHQPR
Sbjct:    9 LNPNAPMFVPLAYRTVEDFSDQWWNLVHSSPWFRDYWLRECFQDPQFQNDDAFDFDF---NLDLQDEDEKERKEGKEVVSLGVLKWRSCGGGWAQAPRYVEKAPKFVKPKVSPRAIHQPR 125
[Close]
BLAST of Pisum_sativum_v1_Contig2918 vs. TrEMBL
Match: B9S493_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0688210 PE=4 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.013e-24
Identity = 56/98 (57.14%), Postives = 69/98 (70.41%), Query Frame = 1 
Query:   61 LNPNAPMFVPLAYRTVEDFSDDWWTLVHSSPWFRDYWLRERFQDPQN---QNDAFSDFDMDEGDLFHVHQI--------EHQHEDGKDLVSLGSLKWR 321
            LNPNAP+FVPLAYRTVEDFSD WW+LVHSSPWFRDYWL+ERFQDPQ+    ND +     D+ D F +  +        E + E GK+LVS+  +KW+
Sbjct:   10 LNPNAPLFVPLAYRTVEDFSDQWWSLVHSSPWFRDYWLQERFQDPQSDALMNDPYDLALPDDLDSFFLDDLIGDTRVNPEDEEEKGKELVSIRGMKWQ 107
[Close]
BLAST of Pisum_sativum_v1_Contig2918 vs. TrEMBL
Match: D7T4H7_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_67.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00032732001 PE=4 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.850e-24
Identity = 62/128 (48.44%), Postives = 77/128 (60.16%), Query Frame = 1 
Query:   61 LNPNAPMFVPLAYRTVEDFSDDWWTLVHSSPWFRDYWLRERFQDPQNQNDAFSDFDMDEGDLFHVHQI---------EHQHEDGKDLVSLGSLKWRGSGGWXXXXXXXXXXXXNFKPRVSPRAIHQPR 417
            LNPNAP+FVPLAYRTVEDFSD WW LV SSPWFRDYWL+E FQDP  + D +  +D+D+  L  +  +         E + E  ++LVSLG+LKWR +                   +VSPR I QPR
Sbjct:   14 LNPNAPLFVPLAYRTVEDFSDQWWALVQSSPWFRDYWLQECFQDP--ETDPYC-YDIDDPALPDIDALFDDCTGSKAEEEKEHQRELVSLGALKWRKTRDPVVTPRHFEKAPKIVSVKVSPRPIQQPR 138
[Close]
BLAST of Pisum_sativum_v1_Contig2918 vs. TrEMBL
Match: Q6ELF9_CUCSA (Poly(A)-binding protein C-terminal interacting protein 6 OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.911e-23
Identity = 54/93 (58.06%), Postives = 67/93 (72.04%), Query Frame = 1 
Query:   61 LNPNAPMFVPLAYRTVEDFSDDWWTLVHSSPWFRDYWLRERFQDPQN-----QNDAFSDFDMDE-GDLFHVHQIEHQHEDGKDLVSLGSLKWR 321
            LNPNAP+FVP+AYRTVEDFSD WW L+ SSPWFR+YWL+ERFQDPQN     +N+ F   D++   D F   Q E + E  KDLV +G+ KW+
Sbjct:   16 LNPNAPLFVPMAYRTVEDFSDQWWELIQSSPWFREYWLQERFQDPQNELSFGENEEFILPDLESFFDDFTRQQEEEELEFSKDLVPMGAFKWQ 108
[Close]
BLAST of Pisum_sativum_v1_Contig2918 vs. TrEMBL
Match: B9HHW5_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_564090 PE=4 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.336e-21
Identity = 60/134 (44.78%), Postives = 73/134 (54.48%), Query Frame = 1 
Query:   61 LNPNAPMFVPLAYRTVEDFSDDWWTLVHSSPWFRDYWLRERFQDPQNQNDAFSD--------------FDMDEGDLFHVHQIEHQHEDGKDLVSLGSLKW-RGSGGWXXXXXXXXXXXXNFKPRVSPRAIHQPR 417
            LNPNAP+FVPL+YRTVEDFSD WW LV SSPWFRDYWL ERF DP++ + +FSD              FD    D     + E      K+LVSLG +KW +G                    ++SPR I QP+
Sbjct:   12 LNPNAPLFVPLSYRTVEDFSDQWWALVQSSPWFRDYWLEERFYDPES-DPSFSDIYDSFLPDDLYSLFFDDPIYDTIKGEEEEEVKGCNKELVSLGVMKWKKGRVDRAQAPRYLEKAPKIVSVKLSPRTIQQPK 144
[Close]
BLAST of Pisum_sativum_v1_Contig2918 vs. TrEMBL
Match: B9HSH8_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_567204 PE=4 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.405e-20
Identity = 63/135 (46.67%), Postives = 75/135 (55.56%), Query Frame = 1 
Query:   61 LNPNAPMFVPLAYRTVEDFSDDWWTLVHSSPWFRDYWLRERFQDPQNQNDAFSDF-------DMD----EGDLFHVHQIEHQHEDG--KDLVSLGSLKW---RGSGGWXXXXXXXXXXXXNFKPRVSPRAIHQPR 417
            LNPNAP+FVPL+YRTVEDFSD WW LV SS WFRDYWL+ERF DP+ +   FSD        D+D    +  ++   + E     G  K+LVSLG LKW   R                 N K  +SPR I QPR
Sbjct:   12 LNPNAPLFVPLSYRTVEDFSDQWWALVQSSAWFRDYWLQERFHDPEAE-PLFSDICDPVLSEDLDSLFFDDPIYDTIKGEEVELKGCNKELVSLGVLKWKMDRFDRAQAPRYLEKIPKIVNVK--LSPRTIQQPR 143
[Close]
BLAST of Pisum_sativum_v1_Contig2918 vs. TrEMBL
Match: C0PSS2_PICSI (Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.954e-16
Identity = 44/79 (55.70%), Postives = 55/79 (69.62%), Query Frame = 1 
Query:   61 LNPNAPMFVPLAYRTVEDFSDDWWTLVHSSPWFRDYWLR---ERFQDPQNQNDAFSDF--DMDEGDLFHVHQIEHQHED 282
            LNPNAP+F+PLAY+ VEDFS +WW LV SSPWFRDYWLR   E F+D ++  D F +   D DE D F   ++E Q E+
Sbjct:   11 LNPNAPLFIPLAYQQVEDFSPEWWNLVQSSPWFRDYWLRESYETFEDAESFADLFPETLEDTDEADEF--SELESQLEE 87
[Close]
BLAST of Pisum_sativum_v1_Contig2918 vs. TrEMBL
Match: A9NPN1_PICSI (Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.954e-16
Identity = 44/79 (55.70%), Postives = 55/79 (69.62%), Query Frame = 1 
Query:   61 LNPNAPMFVPLAYRTVEDFSDDWWTLVHSSPWFRDYWLR---ERFQDPQNQNDAFSDF--DMDEGDLFHVHQIEHQHED 282
            LNPNAP+F+PLAY+ VEDFS +WW LV SSPWFRDYWLR   E F+D ++  D F +   D DE D F   ++E Q E+
Sbjct:   11 LNPNAPLFIPLAYQQVEDFSPEWWNLVQSSPWFRDYWLRESYETFEDAESFADLFPETLEDTDEADEF--SELESQLEE 87
[Close]
BLAST of Pisum_sativum_v1_Contig2918 vs. TrEMBL
Match: A9NNL5_PICSI (Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.954e-16
Identity = 44/79 (55.70%), Postives = 55/79 (69.62%), Query Frame = 1 
Query:   61 LNPNAPMFVPLAYRTVEDFSDDWWTLVHSSPWFRDYWLR---ERFQDPQNQNDAFSDF--DMDEGDLFHVHQIEHQHED 282
            LNPNAP+F+PLAY+ VEDFS +WW LV SSPWFRDYWLR   E F+D ++  D F +   D DE D F   ++E Q E+
Sbjct:   11 LNPNAPLFIPLAYQQVEDFSPEWWNLVQSSPWFRDYWLRESYETFEDAESFADLFPETLEDTDEADEF--SELESQLEE 87
[Close]
BLAST of Pisum_sativum_v1_Contig2918 vs. TrEMBL
Match: Q5MED0_PSEMZ (Early response to dehydration 15-like protein (Fragment) OS=Pseudotsuga menziesii var. menziesii PE=4 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.859e-16
Identity = 44/80 (55.00%), Postives = 53/80 (66.25%), Query Frame = 1 
Query:   61 LNPNAPMFVPLAYRTVEDFSDDWWTLVHSSPWFRDYWLRERFQDPQNQNDAFSDF------DMDEGDLFHVHQIEHQHED 282
            LNPNAP+F+PLAYR VEDFS +WW LV SSPWFRDYWLRE + +  N  + F D       D DE D F   ++E Q E+
Sbjct:   11 LNPNAPLFIPLAYRQVEDFSPEWWNLVQSSPWFRDYWLRESY-ETLNDAECFVDLFPETLEDTDEADEF--SELESQLEE 87
[Close]
BLAST of Pisum_sativum_v1_Contig2918 vs. TAIR peptide
Match: AT4G14270.2 (| Symbols: | Protein containing PAM2 motif which mediates interaction with the PABC domain of polyadenyl binding proteins. | chr4:8218517-8219037 FORWARD LENGTH=141)

HSP 1 Score: 64.6994 bits (156), Expect = 4.414e-11
Identity = 28/53 (52.83%), Postives = 35/53 (66.04%), Query Frame = 1 
Query:   61 LNPNAPMFVPLAYRTVEDFSDDWWTLVHSSPWFRDYWLRERFQDPQNQNDAFS 219
            LNPNAP+F P+ +R VEDFS  WW LV +S WFRD+WL    ++     D FS
Sbjct:   12 LNPNAPVFDPVEFREVEDFSPKWWDLVTTSKWFRDFWLSANSENEFLGGDDFS 64
[Close]
BLAST of Pisum_sativum_v1_Contig2918 vs. TAIR peptide
Match: AT4G14270.1 (| Symbols: | Protein containing PAM2 motif which mediates interaction with the PABC domain of polyadenyl binding proteins. | chr4:8218517-8219037 FORWARD LENGTH=143)

HSP 1 Score: 64.6994 bits (156), Expect = 4.414e-11
Identity = 28/53 (52.83%), Postives = 35/53 (66.04%), Query Frame = 1 
Query:   61 LNPNAPMFVPLAYRTVEDFSDDWWTLVHSSPWFRDYWLRERFQDPQNQNDAFS 219
            LNPNAP+F P+ +R VEDFS  WW LV +S WFRD+WL    ++     D FS
Sbjct:   12 LNPNAPVFDPVEFREVEDFSPKWWDLVTTSKWFRDFWLSANSENEFLGGDDFS 64
[Close]
BLAST of Pisum_sativum_v1_Contig2918 vs. TAIR peptide
Match: AT2G41430.5 (| Symbols: ERD15 | dehydration-induced protein (ERD15) | chr2:17269736-17270314 FORWARD LENGTH=163)

HSP 1 Score: 64.3142 bits (155), Expect = 5.765e-11
Identity = 29/65 (44.62%), Postives = 40/65 (61.54%), Query Frame = 1 
Query:   61 LNPNAPMFVPLAYRTVEDFSDDWWTLVHSSPWFRDYWLRERFQDPQNQNDAFSDFDMDEGDLFHV 255
            LNP+AP+F+P A R VEDFS +WW LV +S W+ DYW+ ++    Q   D F D   +E    H+
Sbjct:   11 LNPDAPLFIPAAVRQVEDFSPEWWQLVTTSTWYPDYWISQQ----QQGADGFYDNGENENGGGHI 71
[Close]
BLAST of Pisum_sativum_v1_Contig2918 vs. TAIR peptide
Match: AT2G41430.2 (| Symbols: ERD15, LSR1, CID1 | dehydration-induced protein (ERD15) | chr2:17269736-17270314 FORWARD LENGTH=163)

HSP 1 Score: 64.3142 bits (155), Expect = 5.765e-11
Identity = 29/65 (44.62%), Postives = 40/65 (61.54%), Query Frame = 1 
Query:   61 LNPNAPMFVPLAYRTVEDFSDDWWTLVHSSPWFRDYWLRERFQDPQNQNDAFSDFDMDEGDLFHV 255
            LNP+AP+F+P A R VEDFS +WW LV +S W+ DYW+ ++    Q   D F D   +E    H+
Sbjct:   11 LNPDAPLFIPAAVRQVEDFSPEWWQLVTTSTWYPDYWISQQ----QQGADGFYDNGENENGGGHI 71
[Close]
BLAST of Pisum_sativum_v1_Contig2918 vs. TAIR peptide
Match: AT2G41430.4 (| Symbols: ERD15, LSR1, CID1 | dehydration-induced protein (ERD15) | chr2:17269736-17270314 FORWARD LENGTH=163)

HSP 1 Score: 64.3142 bits (155), Expect = 5.765e-11
Identity = 29/65 (44.62%), Postives = 40/65 (61.54%), Query Frame = 1 
Query:   61 LNPNAPMFVPLAYRTVEDFSDDWWTLVHSSPWFRDYWLRERFQDPQNQNDAFSDFDMDEGDLFHV 255
            LNP+AP+F+P A R VEDFS +WW LV +S W+ DYW+ ++    Q   D F D   +E    H+
Sbjct:   11 LNPDAPLFIPAAVRQVEDFSPEWWQLVTTSTWYPDYWISQQ----QQGADGFYDNGENENGGGHI 71
[Close]
BLAST of Pisum_sativum_v1_Contig2918 vs. TAIR peptide
Match: AT2G41430.1 (| Symbols: ERD15, LSR1, CID1 | dehydration-induced protein (ERD15) | chr2:17269736-17270314 FORWARD LENGTH=163)

HSP 1 Score: 64.3142 bits (155), Expect = 5.765e-11
Identity = 29/65 (44.62%), Postives = 40/65 (61.54%), Query Frame = 1 
Query:   61 LNPNAPMFVPLAYRTVEDFSDDWWTLVHSSPWFRDYWLRERFQDPQNQNDAFSDFDMDEGDLFHV 255
            LNP+AP+F+P A R VEDFS +WW LV +S W+ DYW+ ++    Q   D F D   +E    H+
Sbjct:   11 LNPDAPLFIPAAVRQVEDFSPEWWQLVTTSTWYPDYWISQQ----QQGADGFYDNGENENGGGHI 71
[Close]
BLAST of Pisum_sativum_v1_Contig2918 vs. TAIR peptide
Match: AT2G41430.3 (| Symbols: ERD15, LSR1, CID1 | dehydration-induced protein (ERD15) | chr2:17269736-17270098 FORWARD LENGTH=120)

HSP 1 Score: 64.3142 bits (155), Expect = 5.765e-11
Identity = 29/65 (44.62%), Postives = 40/65 (61.54%), Query Frame = 1 
Query:   61 LNPNAPMFVPLAYRTVEDFSDDWWTLVHSSPWFRDYWLRERFQDPQNQNDAFSDFDMDEGDLFHV 255
            LNP+AP+F+P A R VEDFS +WW LV +S W+ DYW+ ++    Q   D F D   +E    H+
Sbjct:   11 LNPDAPLFIPAAVRQVEDFSPEWWQLVTTSTWYPDYWISQQ----QQGADGFYDNGENENGGGHI 71
The following BLAST results are available for this feature:
BLAST of Pisum_sativum_v1_Contig2918 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Swissprot)
Total hits: 1
Match NameE-valueIdentityDescription
CID2_ARATH4.241e-1052.83Polyadenylate-binding protein-interacting protein ... [more]
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BLAST of Pisum_sativum_v1_Contig2918 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
C6SYA9_SOYBN2.176e-3563.33Putative uncharacterized protein OS=Glycine max PE... [more]
B9S493_RICCO1.013e-2457.14Putative uncharacterized protein OS=Ricinus commun... [more]
D7T4H7_VITVI3.850e-2448.44Whole genome shotgun sequence of line PN40024, sca... [more]
Q6ELF9_CUCSA1.911e-2358.06Poly(A)-binding protein C-terminal interacting pro... [more]
B9HHW5_POPTR2.336e-2144.78Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
B9HSH8_POPTR4.405e-2046.67Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
C0PSS2_PICSI2.954e-1655.70Putative uncharacterized protein OS=Picea sitchens... [more]
A9NPN1_PICSI2.954e-1655.70Putative uncharacterized protein OS=Picea sitchens... [more]
A9NNL5_PICSI2.954e-1655.70Putative uncharacterized protein OS=Picea sitchens... [more]
Q5MED0_PSEMZ3.859e-1655.00Early response to dehydration 15-like protein (Fra... [more]
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BLAST of Pisum_sativum_v1_Contig2918 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide)
Total hits: 7
Match NameE-valueIdentityDescription
AT4G14270.24.414e-1152.83| Symbols: | Protein containing PAM2 motif which ... [more]
AT4G14270.14.414e-1152.83| Symbols: | Protein containing PAM2 motif which ... [more]
AT2G41430.55.765e-1144.62| Symbols: ERD15 | dehydration-induced protein (ER... [more]
AT2G41430.25.765e-1144.62| Symbols: ERD15, LSR1, CID1 | dehydration-induced... [more]
AT2G41430.45.765e-1144.62| Symbols: ERD15, LSR1, CID1 | dehydration-induced... [more]
AT2G41430.15.765e-1144.62| Symbols: ERD15, LSR1, CID1 | dehydration-induced... [more]
AT2G41430.35.765e-1144.62| Symbols: ERD15, LSR1, CID1 | dehydration-induced... [more]
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InterPro
Analysis Name: InterProScan analysis for Pisum sativum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 12..20
score: NAcoord: 113..124
score
NoneNo IPR availableSEGsegsegcoord: 39..56
score
NoneNo IPR availableSEGsegsegcoord: 9..24
score: NAcoord: 47..66
score

Sequences
The following sequences are available for this feature:

contig sequence

>Pisum_sativum_v1_Contig2918 ID=Pisum_sativum_v1_Contig2918; Name=Pisum_sativum_v1_Contig2918; organism=Pisum sativum; type=contig; length=606bp
ATCTTGTTTTCCAACCACATCAATGGAGTACTCTCTTCAACAAGAACCAC
CTCCTCCTCGTTGAATCCCAACGCTCCGATGTTCGTTCCACTAGCTTATC
GCACTGTGGAAGATTTCTCCGACGACTGGTGGACCCTAGTTCACTCCTCC
CCTTGGTTTCGCGATTACTGGCTCCGCGAACGCTTCCAAGATCCACAGAA
TCAAAACGACGCGTTTTCGGATTTTGATATGGATGAAGGCGATCTTTTCC
ATGTCCATCAAATTGAACACCAACACGAAGATGGGAAAGATTTGGTCTCG
TTGGGATCGTTGAAATGGAGAGGATCTGGTGGGTGGGCTGAAGCTCCGAA
ATATGCGGAGAAGGCTCCGAAGAATTTTAAGCCCAGAGTGAGCCCACGGG
CTATTCATCAGCCTAGGTAGATTGGTGGCAAGTGGTGTTGTAAATAAAAA
AAGAGTCGCTTGAGGCGTAGTATGAAAATAACTAGATGTATGATTTCAGA
GTTTTCTTGTAATTTCTCATTTTCGTTTTGTTTGTTGACTAATTCAGTTG
TTTAGTTTCAGTGTATTACAAATTCAAAAAATAGAATAAAGATTTTCTTT
CTCTGT
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