Pisum_sativum_v1_Contig2970

Contig Overview
NamePisum_sativum_v1_Contig2970
Unique NamePisum_sativum_v1_Contig2970
Typecontig
OrganismPisum sativum (pea)
Sequence length364
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CD861138ESTCD861138:21..212 +Pisum sativum unigene v1n/a
CD859119ESTCD859119:1..358 +Pisum sativum unigene v1n/a
CD861129ESTCD861129:22..342 -Pisum sativum unigene v1n/a
CD861154ESTCD861154:21..354 +Pisum sativum unigene v1n/a
CD861135ESTCD861135:21..359 +Pisum sativum unigene v1n/a
GH720019ESTGH720019:26..315 -Pisum sativum unigene v1n/a
GH719983ESTGH719983:23..322 +Pisum sativum unigene v1n/a
CD860293ESTCD860293:23..358 +Pisum sativum unigene v1n/a
CD861189ESTCD861189:21..364 +Pisum sativum unigene v1n/a
CD861149ESTCD861149:22..364 -Pisum sativum unigene v1n/a
GH720140ESTGH720140:23..364 +Pisum sativum unigene v1n/a
CD861159ESTCD861159:26..362 -Pisum sativum unigene v1n/a
CD860437ESTCD860437:24..361 +Pisum sativum unigene v1n/a
Unigenes
This contig is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Pisum sativum unigene v2Pisum sativum unigene v2contig
Pisum sativum unigene v1Pisum sativum unigene v1contig
Analyses
This contig is derived from or has results from the following analyses
Analysis NameDate Performed
Pisum sativum unigene v12010-12-27
Pisum sativum unigene v22011-03-01
Homology Analysis: Pisum sativum unigene v2 vs Lotus proteins2011-04-21
Homology Analysis: Pisum sativum unigene v2 vs Medicago proteins2011-04-21
Relationships

The following EST feature(s) are a part of this contig:

Feature NameUnique NameSpeciesType
CD861138CD861138Pisum sativumEST
CD859119CD859119Pisum sativumEST
CD861129CD861129Pisum sativumEST
CD861154CD861154Pisum sativumEST
CD861135CD861135Pisum sativumEST
GH720019GH720019Pisum sativumEST
GH719983GH719983Pisum sativumEST
CD860293CD860293Pisum sativumEST
CD861189CD861189Pisum sativumEST
CD861149CD861149Pisum sativumEST
GH720140GH720140Pisum sativumEST
CD861159CD861159Pisum sativumEST
CD860437CD860437Pisum sativumEST


Homology
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BLAST of Pisum_sativum_v1_Contig2970 vs. Lotus protein
Match: chr4.CM0333.770.r2.m (+ phase: 0 )

HSP 1 Score: 101.679 bits (252), Expect = 6.680e-23
Identity = 47/75 (62.67%), Postives = 59/75 (78.67%), Query Frame = -1 
Query:  101 GMFRGFADLMDGRDRSRAMSTRPEPNPNFNSPLPIQAPTGCFLNGDNQKLLGVTNNTNIKLKGDGNGAVTLGDFK 325
            G+ RG ADL+D  D SRA++T+P  N   NSPLP+QAP    LNGDNQKL+GVTNN+N+++KGDGNG+ T GDFK
Sbjct:   66 GLVRGLADLIDEGDGSRAVATQPRSNTIRNSPLPLQAPAVGILNGDNQKLIGVTNNSNVRVKGDGNGSFTFGDFK 140
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BLAST of Pisum_sativum_v1_Contig2970 vs. Medicago proteins
Match: IMGA|Medtr4g121920.1 (Unknown Protein (AHRD V1) chr04_pseudomolecule_IMGAG_V3.5 42119332-42113431 H EGN_Mt100125 20100825)

HSP 1 Score: 110.153 bits (274), Expect = 2.683e-25
Identity = 53/71 (74.65%), Postives = 60/71 (84.51%), Query Frame = -1 
Query:  101 GFADLMDGRDRSRAMSTRPEPNPNFNSPLPIQAPTGCFLNGDNQKLLGVTNNTNIKLKGDGNGAVTLGDFK 313
            GFADLMDG DRS+A +TR E N N +SPLP+QAP   FLNGD+QKLLGVTNNTNIKLKGDGNG  TLG+F+
Sbjct:  420 GFADLMDGGDRSQATATRLESNFNLHSPLPVQAPAADFLNGDSQKLLGVTNNTNIKLKGDGNGVFTLGNFE 490
The following BLAST results are available for this feature:
BLAST of Pisum_sativum_v1_Contig2970 vs. Lotus protein
Analysis Date: 2011-04-21 (Homology Analysis: Pisum sativum unigene v2 vs Lotus proteins)
Total hits: 1
Match NameE-valueIdentityDescription
chr4.CM0333.770.r2.m6.680e-2362.67+ phase: 0 [more]
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BLAST of Pisum_sativum_v1_Contig2970 vs. Medicago proteins
Analysis Date: 2011-04-21 (Homology Analysis: Pisum sativum unigene v2 vs Medicago proteins)
Total hits: 1
Match NameE-valueIdentityDescription
IMGA|Medtr4g121920.12.683e-2574.65Unknown Protein (AHRD V1) chr04_pseudomolecule_IMG... [more]
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Properties
Property NameValue
Singlet in analysisPisum sativum unigene v2
Sequences
The following sequences are available for this feature:

contig sequence

>Pisum_sativum_v1_Contig2970 ID=Pisum_sativum_v1_Contig2970; Name=Pisum_sativum_v1_Contig2970; organism=Pisum sativum; type=contig; length=364bp
AGCGTGGTCGCGGCCGAGGTACTTGATACTGCCTTTTCACAATTGTATGT
TTTATTTATATATAAGAAGGCCGTCTGTATAACTAAAAGCAGCTGATTTA
TTTGAAGTCGCCAAGCGTAACCGCTCCATTACCATCACCCTTTAACTTGA
TGTTGGTGTTATTGGTAACACCAAGTAGCTTTTGATTGTCTCCATTGAGA
AAGCAACCTGTTGGTGCTTGAATGGGGAGAGGAGAGTTGAAGTTGGGATT
TGGTTCAGGTCGAGTTGACATAGCTCGGCTTCTATCACGTCCATCCATCA
AGTCAGCAAAACCTCTAAACATCCCTGCCATTTGGAAGAAAAGGAACTGT
TTAACTTGTTTTCT
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