Pisum_sativum_v1_Contig2978

Contig Overview
NamePisum_sativum_v1_Contig2978
Unique NamePisum_sativum_v1_Contig2978
Typecontig
OrganismPisum sativum (pea)
Sequence length352
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CD859077ESTCD859077:1..351 +
CD858645ESTCD858645:1..351 +
AM161648ESTAM161648:21..352 -
Unigenes
This contig is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Pisum sativum unigene v1Pisum sativum unigene v1contig
Analyses
This contig is derived from or has results from the following analyses
Analysis NameDate Performed
Pisum sativum unigene v12010-12-27
Homology Analysis: Pisum sativum unigene v1 vs Trembl2010-12-28
Homology Analysis: Pisum sativum unigene v1 vs Swissprot2010-12-28
Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide2011-02-03
InterProScan analysis for Pisum sativum unigene v12010-12-29
Relationships

The following EST feature(s) are a part of this contig:

Feature NameUnique NameSpeciesType
CD859077CD859077Pisum sativumEST
CD858645CD858645Pisum sativumEST
AM161648AM161648Pisum sativumEST


Homology
[Close]
BLAST of Pisum_sativum_v1_Contig2978 vs. SwissProt
Match: SGAT_ARATH (Serine--glyoxylate aminotransferase OS=Arabidopsis thaliana GN=AGT1 PE=1 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 1.496e-22
Identity = 49/56 (87.50%), Postives = 53/56 (94.64%), Query Frame = -3 
Query:   60 MDYVNGPGRNHLFVPGPVNIPDQVIRAMSRNNEDYRSPAIPALTKELLEDVKKIFK 227
            MDY+ GPGR+HLFVPGPVNIP+ VIRAM+RNNEDYRSPAIPALTK LLEDVKKIFK
Sbjct:    1 MDYMYGPGRHHLFVPGPVNIPEPVIRAMNRNNEDYRSPAIPALTKTLLEDVKKIFK 56
[Close]
BLAST of Pisum_sativum_v1_Contig2978 vs. SwissProt
Match: SGAA_METEA (Serine--glyoxylate aminotransferase OS=Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1) GN=sgaA PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 3.694e-13
Identity = 33/49 (67.35%), Postives = 39/49 (79.59%), Query Frame = -3 
Query:   63 PGRNHLFVPGPVNIPDQVIRAMSRNNEDYRSPAIPALTKELLEDVKKIF 209
            PGRNHLFVPGP NIPD+V+RAM   +ED+RS   P+LTK L ED KK+F
Sbjct:    7 PGRNHLFVPGPTNIPDRVMRAMMVQSEDHRSVDFPSLTKPLFEDTKKVF 55
[Close]
BLAST of Pisum_sativum_v1_Contig2978 vs. SwissProt
Match: SGAA_HYPME (Serine--glyoxylate aminotransferase OS=Hyphomicrobium methylovorum GN=sgaA PE=3 SV=2)

HSP 1 Score: 56.6102 bits (135), Expect = 4.673e-8
Identity = 27/46 (58.70%), Postives = 30/46 (65.22%), Query Frame = -3 
Query:   60 HLFVPGPVNIPDQVIRAMSRNNEDYRSPAIPALTKELLEDVKKIFK 197
            HLF+PGP NIPD V  AM+   ED RSP  P  T  L ED+KK FK
Sbjct:    6 HLFIPGPTNIPDAVRMAMNIPMEDMRSPEFPKFTLPLFEDLKKAFK 51
[Close]
BLAST of Pisum_sativum_v1_Contig2978 vs. TrEMBL
Match: B7FJC4_MEDTR (Putative uncharacterized protein OS=Medicago truncatula PE=4 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.288e-24
Identity = 55/56 (98.21%), Postives = 55/56 (98.21%), Query Frame = -3 
Query:   60 MDYVNGPGRNHLFVPGPVNIPDQVIRAMSRNNEDYRSPAIPALTKELLEDVKKIFK 227
            MDYVNGPGRNHLFVPGPVNIPDQVIRAMSRNNEDYRSPAIPALTK LLEDVKKIFK
Sbjct:    1 MDYVNGPGRNHLFVPGPVNIPDQVIRAMSRNNEDYRSPAIPALTKTLLEDVKKIFK 56
[Close]
BLAST of Pisum_sativum_v1_Contig2978 vs. TrEMBL
Match: Q3S4G9_SOYBN (Enzymatic resistance protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.205e-22
Identity = 50/56 (89.29%), Postives = 53/56 (94.64%), Query Frame = -3 
Query:   60 MDYVNGPGRNHLFVPGPVNIPDQVIRAMSRNNEDYRSPAIPALTKELLEDVKKIFK 227
            MDY N PGRNHLFVPGPVNIPDQ+IRAM+RNNEDYRSPAIPA+TK LLEDVKKIFK
Sbjct:    1 MDYFNAPGRNHLFVPGPVNIPDQIIRAMNRNNEDYRSPAIPAMTKTLLEDVKKIFK 56
[Close]
BLAST of Pisum_sativum_v1_Contig2978 vs. TrEMBL
Match: C6TK73_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.205e-22
Identity = 50/56 (89.29%), Postives = 53/56 (94.64%), Query Frame = -3 
Query:   60 MDYVNGPGRNHLFVPGPVNIPDQVIRAMSRNNEDYRSPAIPALTKELLEDVKKIFK 227
            MDY N PGRNHLFVPGPVNIPDQ+IRAM+RNNEDYRSPAIPA+TK LLEDVKKIFK
Sbjct:    1 MDYFNAPGRNHLFVPGPVNIPDQIIRAMNRNNEDYRSPAIPAMTKTLLEDVKKIFK 56
[Close]
BLAST of Pisum_sativum_v1_Contig2978 vs. TrEMBL
Match: C6T8Z2_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.205e-22
Identity = 50/56 (89.29%), Postives = 53/56 (94.64%), Query Frame = -3 
Query:   60 MDYVNGPGRNHLFVPGPVNIPDQVIRAMSRNNEDYRSPAIPALTKELLEDVKKIFK 227
            MDY N PGRNHLFVPGPVNIPDQ+IRAM+RNNEDYRSPAIPA+TK LLEDVKKIFK
Sbjct:    1 MDYFNAPGRNHLFVPGPVNIPDQIIRAMNRNNEDYRSPAIPAMTKTLLEDVKKIFK 56
[Close]
BLAST of Pisum_sativum_v1_Contig2978 vs. TrEMBL
Match: C1IGP4_9FABA (Alanine:glyoxylate aminotransferase OS=Vigna radiata PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.205e-22
Identity = 50/56 (89.29%), Postives = 53/56 (94.64%), Query Frame = -3 
Query:   60 MDYVNGPGRNHLFVPGPVNIPDQVIRAMSRNNEDYRSPAIPALTKELLEDVKKIFK 227
            MDY N PGRNHLFVPGPVNIPDQ+IRAM+RNNEDYRSPAIPA+TK LLEDVKKIFK
Sbjct:    1 MDYFNAPGRNHLFVPGPVNIPDQIIRAMNRNNEDYRSPAIPAMTKTLLEDVKKIFK 56
[Close]
BLAST of Pisum_sativum_v1_Contig2978 vs. TrEMBL
Match: B7U528_SOYBN (Serine glyoxylate aminotransferase 3 OS=Glycine max GN=SGT3 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.205e-22
Identity = 50/56 (89.29%), Postives = 53/56 (94.64%), Query Frame = -3 
Query:   60 MDYVNGPGRNHLFVPGPVNIPDQVIRAMSRNNEDYRSPAIPALTKELLEDVKKIFK 227
            MDY N PGRNHLFVPGPVNIPDQ+IRAM+RNNEDYRSPAIPA+TK LLEDVKKIFK
Sbjct:    1 MDYFNAPGRNHLFVPGPVNIPDQIIRAMNRNNEDYRSPAIPAMTKTLLEDVKKIFK 56
[Close]
BLAST of Pisum_sativum_v1_Contig2978 vs. TrEMBL
Match: B7U527_SOYBN (Serine glyoxylate aminotransferase 2 OS=Glycine max GN=SGT2 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.205e-22
Identity = 50/56 (89.29%), Postives = 53/56 (94.64%), Query Frame = -3 
Query:   60 MDYVNGPGRNHLFVPGPVNIPDQVIRAMSRNNEDYRSPAIPALTKELLEDVKKIFK 227
            MDY N PGRNHLFVPGPVNIPDQ+IRAM+RNNEDYRSPAIPA+TK LLEDVKKIFK
Sbjct:    1 MDYFNAPGRNHLFVPGPVNIPDQIIRAMNRNNEDYRSPAIPAMTKTLLEDVKKIFK 56
[Close]
BLAST of Pisum_sativum_v1_Contig2978 vs. TrEMBL
Match: Q8W125_CUCME (Aminotransferase 2 OS=Cucumis melo PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.574e-22
Identity = 50/56 (89.29%), Postives = 54/56 (96.43%), Query Frame = -3 
Query:   60 MDYVNGPGRNHLFVPGPVNIPDQVIRAMSRNNEDYRSPAIPALTKELLEDVKKIFK 227
            MDYV GPGRNHLFVPGPVNIP+QV+RAM+RNNEDYRSPA+PALTK LLEDVKKIFK
Sbjct:    1 MDYVYGPGRNHLFVPGPVNIPEQVLRAMNRNNEDYRSPAVPALTKTLLEDVKKIFK 56
[Close]
BLAST of Pisum_sativum_v1_Contig2978 vs. TrEMBL
Match: Q6V1W6_CUCME (Aminotransferase 2 OS=Cucumis melo PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.574e-22
Identity = 50/56 (89.29%), Postives = 54/56 (96.43%), Query Frame = -3 
Query:   60 MDYVNGPGRNHLFVPGPVNIPDQVIRAMSRNNEDYRSPAIPALTKELLEDVKKIFK 227
            MDYV GPGRNHLFVPGPVNIP+QV+RAM+RNNEDYRSPA+PALTK LLEDVKKIFK
Sbjct:    1 MDYVYGPGRNHLFVPGPVNIPEQVLRAMNRNNEDYRSPAVPALTKTLLEDVKKIFK 56
[Close]
BLAST of Pisum_sativum_v1_Contig2978 vs. TrEMBL
Match: Q6V1W4_CUCME (Aminotransferase 2 OS=Cucumis melo PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.574e-22
Identity = 50/56 (89.29%), Postives = 54/56 (96.43%), Query Frame = -3 
Query:   60 MDYVNGPGRNHLFVPGPVNIPDQVIRAMSRNNEDYRSPAIPALTKELLEDVKKIFK 227
            MDYV GPGRNHLFVPGPVNIP+QV+RAM+RNNEDYRSPA+PALTK LLEDVKKIFK
Sbjct:    1 MDYVYGPGRNHLFVPGPVNIPEQVLRAMNRNNEDYRSPAVPALTKTLLEDVKKIFK 56
[Close]
BLAST of Pisum_sativum_v1_Contig2978 vs. TAIR peptide
Match: AT2G13360.2 (| Symbols: AGT, AGT1, SGAT | alanine:glyoxylate aminotransferase | chr2:5539417-5540902 REVERSE LENGTH=401)

HSP 1 Score: 104.76 bits (260), Expect = 1.151e-23
Identity = 49/56 (87.50%), Postives = 53/56 (94.64%), Query Frame = -3 
Query:   60 MDYVNGPGRNHLFVPGPVNIPDQVIRAMSRNNEDYRSPAIPALTKELLEDVKKIFK 227
            MDY+ GPGR+HLFVPGPVNIP+ VIRAM+RNNEDYRSPAIPALTK LLEDVKKIFK
Sbjct:    1 MDYMYGPGRHHLFVPGPVNIPEPVIRAMNRNNEDYRSPAIPALTKTLLEDVKKIFK 56
[Close]
BLAST of Pisum_sativum_v1_Contig2978 vs. TAIR peptide
Match: AT2G13360.1 (| Symbols: AGT, AGT1, SGAT | alanine:glyoxylate aminotransferase | chr2:5539417-5540902 REVERSE LENGTH=401)

HSP 1 Score: 104.76 bits (260), Expect = 1.151e-23
Identity = 49/56 (87.50%), Postives = 53/56 (94.64%), Query Frame = -3 
Query:   60 MDYVNGPGRNHLFVPGPVNIPDQVIRAMSRNNEDYRSPAIPALTKELLEDVKKIFK 227
            MDY+ GPGR+HLFVPGPVNIP+ VIRAM+RNNEDYRSPAIPALTK LLEDVKKIFK
Sbjct:    1 MDYMYGPGRHHLFVPGPVNIPEPVIRAMNRNNEDYRSPAIPALTKTLLEDVKKIFK 56
The following BLAST results are available for this feature:
BLAST of Pisum_sativum_v1_Contig2978 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Swissprot)
Total hits: 3
Match NameE-valueIdentityDescription
SGAT_ARATH1.496e-2287.50Serine--glyoxylate aminotransferase OS=Arabidopsis... [more]
SGAA_METEA3.694e-1367.35Serine--glyoxylate aminotransferase OS=Methylobact... [more]
SGAA_HYPME4.673e-858.70Serine--glyoxylate aminotransferase OS=Hyphomicrob... [more]
back to top
BLAST of Pisum_sativum_v1_Contig2978 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
B7FJC4_MEDTR1.288e-2498.21Putative uncharacterized protein OS=Medicago trunc... [more]
Q3S4G9_SOYBN1.205e-2289.29Enzymatic resistance protein OS=Glycine max PE=2 S... [more]
C6TK73_SOYBN1.205e-2289.29Putative uncharacterized protein OS=Glycine max PE... [more]
C6T8Z2_SOYBN1.205e-2289.29Putative uncharacterized protein OS=Glycine max PE... [more]
C1IGP4_9FABA1.205e-2289.29Alanine:glyoxylate aminotransferase OS=Vigna radia... [more]
B7U528_SOYBN1.205e-2289.29Serine glyoxylate aminotransferase 3 OS=Glycine ma... [more]
B7U527_SOYBN1.205e-2289.29Serine glyoxylate aminotransferase 2 OS=Glycine ma... [more]
Q8W125_CUCME1.574e-2289.29Aminotransferase 2 OS=Cucumis melo PE=2 SV=1[more]
Q6V1W6_CUCME1.574e-2289.29Aminotransferase 2 OS=Cucumis melo PE=2 SV=1[more]
Q6V1W4_CUCME1.574e-2289.29Aminotransferase 2 OS=Cucumis melo PE=2 SV=1[more]
back to top
BLAST of Pisum_sativum_v1_Contig2978 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide)
Total hits: 2
Match NameE-valueIdentityDescription
AT2G13360.21.151e-2387.50| Symbols: AGT, AGT1, SGAT | alanine:glyoxylate am... [more]
AT2G13360.11.151e-2387.50| Symbols: AGT, AGT1, SGAT | alanine:glyoxylate am... [more]
back to top
InterPro
Analysis Name: InterProScan analysis for Pisum sativum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015421Pyridoxal phosphate-dependent transferase, major region, subdomain 1GENE3D3.40.640.10no descriptioncoord: 23..77
score: 0.0
IPR015424Pyridoxal phosphate-dependent transferase, major domainSUPERFAMILY53383PLP-dependent transferasescoord: 2..74
score: 1.4
NoneNo IPR availablePANTHERPTHR21152AMINOTRANSFERASE CLASS Vcoord: 11..74
score: 3.7
NoneNo IPR availablePANTHERPTHR21152:SF5SERINE-PYRUVATE AMINOTRANSFERASEcoord: 11..74
score: 3.7
NoneNo IPR availableSEGsegsegcoord: 59..72
score

Sequences
The following sequences are available for this feature:

contig sequence

>Pisum_sativum_v1_Contig2978 ID=Pisum_sativum_v1_Contig2978; Name=Pisum_sativum_v1_Contig2978; organism=Pisum sativum; type=contig; length=352bp
AGCGTGGTCGCGGCCGAGGTACCAGTGGTAGGGAAAAGAAAGGGTGTTCC
GGTAGTAGTCTTGAAAATCTTCTTGACATCCTCAAGTAGCTCTTTTGTGA
GAGCTGGAATTGCAGGAGAACGATAGTCCTCGTTGTTTCGGCTCATAGCC
CGAATGACCTGGTCAGGTATGTTAACCGGCCCTGGAACAAAGAGATGGTT
TCTTCCTGGTCCATTAACATAGTCCATCTTACCTTAGCTTGAAATTGCTA
CCTCTTTGAACTCAAACAACTCTTGCCTTTCTTTTAGCACCAAAGAATCA
CCAGGGAGGATTTCAGAGAGTTTGGTGAAATATGGCAGAAGTAAGAGCTG
CC
back to top
Annotated Terms
The following terms have been associated with this contig:
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0030170pyridoxal phosphate binding
Vocabulary: INTERPRO
TermDefinition
IPR015421PyrdxlP-dep_Trfase_major
IPR015424PyrdxlP-dep_Trfase