Pisum_sativum_v1_Contig2979

Contig Overview
NamePisum_sativum_v1_Contig2979
Unique NamePisum_sativum_v1_Contig2979
Typecontig
OrganismPisum sativum (pea)
Sequence length517
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CD859073ESTCD859073:1..476 +Pisum sativum unigene v1n/a
CD859053ESTCD859053:1..498 +Pisum sativum unigene v1n/a
CD859051ESTCD859051:2..499 -Pisum sativum unigene v1n/a
CD859135ESTCD859135:23..496 +Pisum sativum unigene v1n/a
CD859050ESTCD859050:2..499 -Pisum sativum unigene v1n/a
CD859093ESTCD859093:21..517 +Pisum sativum unigene v1n/a
Unigenes
This contig is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Pisum sativum unigene v1Pisum sativum unigene v1contig
Analyses
This contig is derived from or has results from the following analyses
Analysis NameDate Performed
Pisum sativum unigene v12010-12-27
Homology Analysis: Pisum sativum unigene v1 vs Trembl2010-12-28
InterProScan analysis for Pisum sativum unigene v12010-12-29
Relationships

The following EST feature(s) are a part of this contig:

Feature NameUnique NameSpeciesType
CD859073CD859073Pisum sativumEST
CD859053CD859053Pisum sativumEST
CD859051CD859051Pisum sativumEST
CD859135CD859135Pisum sativumEST
CD859050CD859050Pisum sativumEST
CD859093CD859093Pisum sativumEST


Homology
[Close]
BLAST of Pisum_sativum_v1_Contig2979 vs. TrEMBL
Match: O22612_PEA (Dormancy-associated protein OS=Pisum sativum GN=DRM2 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.967e-10
Identity = 33/43 (76.74%), Postives = 41/43 (95.35%), Query Frame = -2 
Query:  367 MDSKNAILIFGLLAMLLVISSQVSARDLTDEVVEKSNEVNDAK 495
            MDS+ A+LI GLLAM+L+ISS+VSAR+LT+EVVEKS+EVNDAK
Sbjct:    1 MDSRKAMLILGLLAMVLLISSEVSARELTEEVVEKSDEVNDAK 43
[Close]
BLAST of Pisum_sativum_v1_Contig2979 vs. TrEMBL
Match: Q0E7L3_PEA (Putative glycine rich protein OS=Pisum sativum GN=grp1 PE=2 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 1.218e-7
Identity = 33/50 (66.00%), Postives = 38/50 (76.00%), Query Frame = -2 
Query:  367 MDSKNAILIFGLLAMLLVISSQVSARDLT-------DEVVEKSNEVNDAK 495
            MDS+N  LI GLLAM+LVISS+VSAR+L        +EV EKSNEVNDAK
Sbjct:    1 MDSRNVFLILGLLAMVLVISSEVSARELAETSTNAKEEVAEKSNEVNDAK 50
The following BLAST results are available for this feature:
BLAST of Pisum_sativum_v1_Contig2979 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl)
Total hits: 2
Match NameE-valueIdentityDescription
O22612_PEA9.967e-1076.74Dormancy-associated protein OS=Pisum sativum GN=DR... [more]
Q0E7L3_PEA1.218e-766.00Putative glycine rich protein OS=Pisum sativum GN=... [more]
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InterPro
Analysis Name: InterProScan analysis for Pisum sativum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 6..17
score
NoneNo IPR availableSEGsegsegcoord: 16..43
score: NAcoord: 66..106
score
NoneNo IPR availableSEGsegsegcoord: 51..83
score: NAcoord: 101..133
score
NoneNo IPR availableSEGsegsegcoord: 4..35
score
NoneNo IPR availableSEGsegsegcoord: 5..37
score
IPR010800Glycine rich proteinPFAMPF07172GRPcoord: 8..83
score: 1.3

Sequences
The following sequences are available for this feature:

contig sequence

>Pisum_sativum_v1_Contig2979 ID=Pisum_sativum_v1_Contig2979; Name=Pisum_sativum_v1_Contig2979; organism=Pisum sativum; type=contig; length=517bp
AGCGTGGTCGCGGCCGAGGTACCTCTTTTATTTTACACCAAACTATTCAT
TCATGAAACTTATTACTTTGAATGTGCATCATGTATGATGATATAATCAG
TTTCCATTGTCTGAAGCACCACCGTGTCCACCATGTCCTCCATGTCCTCC
ATGTCCACCATGGTAACCGCCACCACCACCATGGTAACCACCACCACCAT
GACCGTAGTGTCCATATTTGGCATCATTTACGTCATTTGAAGTTTCAACA
ACCTCATTGTTGGAAACACCACCATGTCCACCATGTCCACCATGTCCTCC
ATGTCCACCGTGGTAACTGCCGCCACCACCATGGTAACTACCACCACCAT
GACCATAGTGTCCATATTTGGCATCATTTACTTCATTTGACTTTTCAACA
ACCTCATCAGTTAAGTCCCTAGCTGACACTTGTGAGGAAATAACAAGAAG
CATGGCCAATAGACCAAAGATGAGGATTGCATTTTTGGAATCCATTGTAC
CTCGGCCGCGACCACGC
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR010800GRP