Pisum_sativum_v1_Contig3026
Contig Overview
Alignments
The following features are aligned
Unigenes
This contig is part of the following unigenes:
Analyses
This contig is derived from or has results from the following analyses
Relationships
The following EST feature(s) are a part of this contig:
Homology
BLAST of Pisum_sativum_v1_Contig3026 vs. SwissProt
Match: TMP14_ARATH (Thylakoid membrane phosphoprotein 14 kDa, chloroplastic OS=Arabidopsis thaliana GN=TMP14 PE=1 SV=2) HSP 1 Score: 112.849 bits (281), Expect = 5.367e-25 Identity = 53/96 (55.21%), Postives = 66/96 (68.75%), Query Frame = -1 Query: 100 QLSVSDSPEFL*TIQETWEKVED*YAVSTIAVAGAVALWGSAGVISAIDRXXXXXXXXXXXGIGYTGWFAYKNIIFKPDREVLVRKIKGTVKEITG 387 + ++ PE + T QE WEKV+D YA+ ++A AG VALWGSAG+ISAIDR GIGYTGWF YKN++FKPDRE L K+K T K+I G Sbjct: 77 EAETTELPEIVKTAQEAWEKVDDKYAIGSLAFAGVVALWGSAGMISAIDRLPLVPGVLELVGIGYTGWFTYKNLVFKPDREALFEKVKSTYKDILG 172
BLAST of Pisum_sativum_v1_Contig3026 vs. SwissProt
Match: Y4115_ARATH (Uncharacterized protein At4g01150, chloroplastic OS=Arabidopsis thaliana GN=At4g01150 PE=1 SV=1) HSP 1 Score: 57.7658 bits (138), Expect = 2.049e-8 Identity = 31/98 (31.63%), Postives = 51/98 (52.04%), Query Frame = -1 Query: 100 AEQLSVSDSPEFL*TIQETWEKVED*YAVSTIAVAGAVALWGSAGVISAIDRXXXXXXXXXXXGIGYTGWFAYKNIIFKPDREVLVRKIKGTVKEITG 393 +E+ S D+ E + ++E W+ +E+ V VA+W S+ V+ AI+ G+GYTGWF Y+ ++FK R+ L I+ K+I G Sbjct: 65 SEETSSIDTNELITDLKEKWDGLENKSTVLIYGGGAIVAVWLSSIVVGAINSVPLLPKVMELVGLGYTGWFVYRYLLFKSSRKELAEDIESLKKKIAG 162
BLAST of Pisum_sativum_v1_Contig3026 vs. TrEMBL
Match: Q2HTB6_MEDTR (Putative uncharacterized protein OS=Medicago truncatula GN=MtrDRAFT_AC150443g23v2 PE=2 SV=1) HSP 1 Score: 139.813 bits (351), Expect = 8.351e-32 Identity = 68/96 (70.83%), Postives = 79/96 (82.29%), Query Frame = -1 Query: 94 SVSDSPEFL*TIQETWEKVED*YAVSTIAVAGAVALWGSAGVISAIDRXXXXXXXXXXXGIGYTGWFAYKNIIFKPDREVLVRKIKGTVKEITGID 381 +V+DSPE + TIQ+TW+KVED YAVS +AVAG VALWGSAGVISAIDR GIGYTGWFAYKN++FKP+RE L+RKIKGTVK+ITGID Sbjct: 84 TVTDSPELVKTIQQTWDKVEDKYAVSALAVAGTVALWGSAGVISAIDRLPLIPGVLELVGIGYTGWFAYKNLVFKPEREALIRKIKGTVKDITGID 179
BLAST of Pisum_sativum_v1_Contig3026 vs. TrEMBL
Match: B9GRR8_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_816652 PE=4 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 1.168e-25 Identity = 57/92 (61.96%), Postives = 68/92 (73.91%), Query Frame = -1 Query: 100 SDSPEFL*TIQETWEKVED*YAVSTIAVAGAVALWGSAGVISAIDRXXXXXXXXXXXGIGYTGWFAYKNIIFKPDREVLVRKIKGTVKEITG 375 +D PE + T+QE W+KVED YAVS++ VAG VALWGSAG ISAI+R GIGYTGWFAYKN++FKPDRE L+ KIK T KE+ G Sbjct: 79 TDLPEIVKTVQEAWDKVEDKYAVSSVVVAGGVALWGSAGFISAIERLPLIPGVLELAGIGYTGWFAYKNLVFKPDREALIAKIKDTYKEVIG 170
BLAST of Pisum_sativum_v1_Contig3026 vs. TrEMBL
Match: A9PJN6_9ROSI (Putative uncharacterized protein OS=Populus trichocarpa x Populus deltoides PE=2 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 1.168e-25 Identity = 57/92 (61.96%), Postives = 68/92 (73.91%), Query Frame = -1 Query: 100 SDSPEFL*TIQETWEKVED*YAVSTIAVAGAVALWGSAGVISAIDRXXXXXXXXXXXGIGYTGWFAYKNIIFKPDREVLVRKIKGTVKEITG 375 +D PE + T+QE W+KVED YAVS++ VAG VALWGSAG ISAI+R GIGYTGWFAYKN++FKPDRE L+ KIK T KE+ G Sbjct: 79 TDLPEIVKTVQEAWDKVEDKYAVSSVVVAGGVALWGSAGFISAIERLPLIPGVLELAGIGYTGWFAYKNLVFKPDREALIAKIKDTYKEVIG 170
BLAST of Pisum_sativum_v1_Contig3026 vs. TrEMBL
Match: C6T0E6_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 3.398e-25 Identity = 59/96 (61.46%), Postives = 72/96 (75.00%), Query Frame = -1 Query: 100 QLSVSDSPEFL*TIQETWEKVED*YAVSTIAVAGAVALWGSAGVISAIDRXXXXXXXXXXXGIGYTGWFAYKNIIFKPDREVLVRKIKGTVKEITG 387 +LSV+++PE + TIQE W+KVED YAVS++AVAG VAL GSAG+ISAIDR GIGY+GWFAYKN+ FKPDRE +RK+K T EI G Sbjct: 72 ELSVAETPEIVKTIQEAWDKVEDKYAVSSLAVAGVVALVGSAGMISAIDRLPLIPGVLEVVGIGYSGWFAYKNLFFKPDREAFLRKVKETYSEILG 167
BLAST of Pisum_sativum_v1_Contig3026 vs. TrEMBL
Match: B9I954_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_664200 PE=4 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 9.888e-25 Identity = 54/96 (56.25%), Postives = 71/96 (73.96%), Query Frame = -1 Query: 100 QLSVSDSPEFL*TIQETWEKVED*YAVSTIAVAGAVALWGSAGVISAIDRXXXXXXXXXXXGIGYTGWFAYKNIIFKPDREVLVRKIKGTVKEITG 387 +++ ++ PE + T+QE W+KVED YAVS++ VAG VALWGS G+ISAIDR GIGY+GWFAYKN++FKPDRE L+ KIK T +E+ G Sbjct: 75 EVASTELPEIVKTVQEAWDKVEDKYAVSSLVVAGGVALWGSTGLISAIDRLPLIPGVLELVGIGYSGWFAYKNLVFKPDREALIAKIKDTYREVIG 170
BLAST of Pisum_sativum_v1_Contig3026 vs. TrEMBL
Match: A9PFP7_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 9.888e-25 Identity = 54/96 (56.25%), Postives = 71/96 (73.96%), Query Frame = -1 Query: 100 QLSVSDSPEFL*TIQETWEKVED*YAVSTIAVAGAVALWGSAGVISAIDRXXXXXXXXXXXGIGYTGWFAYKNIIFKPDREVLVRKIKGTVKEITG 387 +++ ++ PE + T+QE W+KVED YAVS++ VAG VALWGS G+ISAIDR GIGY+GWFAYKN++FKPDRE L+ KIK T +E+ G Sbjct: 75 EVASTELPEIVKTVQEAWDKVEDKYAVSSLVVAGGVALWGSTGLISAIDRLPLIPGVLELVGIGYSGWFAYKNLVFKPDREALIAKIKDTYREVIG 170
BLAST of Pisum_sativum_v1_Contig3026 vs. TrEMBL
Match: D7LF91_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_483848 PE=4 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 4.907e-24 Identity = 54/96 (56.25%), Postives = 66/96 (68.75%), Query Frame = -1 Query: 100 QLSVSDSPEFL*TIQETWEKVED*YAVSTIAVAGAVALWGSAGVISAIDRXXXXXXXXXXXGIGYTGWFAYKNIIFKPDREVLVRKIKGTVKEITG 387 + ++ PE + T QE WEKVED YA+ ++A AG VALWGSAG+ISAIDR GIGYTGWF YKN++FKPDRE L K+K T K+I G Sbjct: 80 EAETTELPEIVKTAQEAWEKVEDKYAIGSLAFAGVVALWGSAGMISAIDRLPLVPGVLELVGIGYTGWFTYKNLVFKPDREALFEKVKNTYKDILG 175
BLAST of Pisum_sativum_v1_Contig3026 vs. TrEMBL
Match: D7U838_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_48.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00027447001 PE=4 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 1.428e-23 Identity = 53/96 (55.21%), Postives = 69/96 (71.88%), Query Frame = -1 Query: 100 QLSVSDSPEFL*TIQETWEKVED*YAVSTIAVAGAVALWGSAGVISAIDRXXXXXXXXXXXGIGYTGWFAYKNIIFKPDREVLVRKIKGTVKEITG 387 ++ ++ PE + T+QE W+KVED YAVS++A AG V LW S G++SAID+ GIGY+GWFAYKN+IFKPDRE L++KIK T KEI G Sbjct: 74 EVGTTEVPEIIKTVQEAWDKVEDKYAVSSLAAAGFVGLWVSTGMVSAIDKLPLVPGVLEIVGIGYSGWFAYKNLIFKPDREALIQKIKDTYKEIIG 169
BLAST of Pisum_sativum_v1_Contig3026 vs. TrEMBL
Match: A5C9J2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_028013 PE=4 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 3.181e-23 Identity = 52/96 (54.17%), Postives = 69/96 (71.88%), Query Frame = -1 Query: 100 QLSVSDSPEFL*TIQETWEKVED*YAVSTIAVAGAVALWGSAGVISAIDRXXXXXXXXXXXGIGYTGWFAYKNIIFKPDREVLVRKIKGTVKEITG 387 ++ ++ PE + T+QE W+KVED YAVS++A AG V LW S G++SAID+ GIGY+GWFAYKN+IFKPDR+ L++KIK T KEI G Sbjct: 74 EVGTTEVPEIIKTVQEAWDKVEDKYAVSSLAAAGFVGLWVSTGMVSAIDKLPLVPGVLEIVGIGYSGWFAYKNLIFKPDRDALIQKIKDTYKEIIG 169
BLAST of Pisum_sativum_v1_Contig3026 vs. TrEMBL
Match: B4FS61_MAIZE (Putative uncharacterized protein OS=Zea mays PE=2 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 1.930e-20 Identity = 49/94 (52.13%), Postives = 61/94 (64.89%), Query Frame = -1 Query: 100 SVSDSPEFL*TIQETWEKVED*YAVSTIAVAGAVALWGSAGVISAIDRXXXXXXXXXXXGIGYTGWFAYKNIIFKPDREVLVRKIKGTVKEITG 381 + + PE + Q+ W+KVED YAV+TI VA VALW G I AID+ GIGYTGWF Y+N++F+PDRE L+ KIK T KEITG Sbjct: 54 ATEEVPEIVKAAQDAWDKVEDKYAVATIGVAAIVALWTVVGAIKAIDKLPLLPGVLEIVGIGYTGWFTYRNLVFQPDREALIGKIKSTYKEITG 147
BLAST of Pisum_sativum_v1_Contig3026 vs. TAIR peptide
Match: AT2G46820.2 (| Symbols: PTAC8, TMP14, PSAP, PSI-P | photosystem I P subunit | chr2:19243729-19244870 FORWARD LENGTH=174) HSP 1 Score: 112.849 bits (281), Expect = 5.654e-26 Identity = 53/96 (55.21%), Postives = 66/96 (68.75%), Query Frame = -1 Query: 100 QLSVSDSPEFL*TIQETWEKVED*YAVSTIAVAGAVALWGSAGVISAIDRXXXXXXXXXXXGIGYTGWFAYKNIIFKPDREVLVRKIKGTVKEITG 387 + ++ PE + T QE WEKV+D YA+ ++A AG VALWGSAG+ISAIDR GIGYTGWF YKN++FKPDRE L K+K T K+I G Sbjct: 77 EAETTELPEIVKTAQEAWEKVDDKYAIGSLAFAGVVALWGSAGMISAIDRLPLVPGVLELVGIGYTGWFTYKNLVFKPDREALFEKVKSTYKDILG 172
BLAST of Pisum_sativum_v1_Contig3026 vs. TAIR peptide
Match: AT2G46820.1 (| Symbols: PTAC8, TMP14, PSAP, PSI-P | photosystem I P subunit | chr2:19243729-19244870 FORWARD LENGTH=174) HSP 1 Score: 112.849 bits (281), Expect = 5.654e-26 Identity = 53/96 (55.21%), Postives = 66/96 (68.75%), Query Frame = -1 Query: 100 QLSVSDSPEFL*TIQETWEKVED*YAVSTIAVAGAVALWGSAGVISAIDRXXXXXXXXXXXGIGYTGWFAYKNIIFKPDREVLVRKIKGTVKEITG 387 + ++ PE + T QE WEKV+D YA+ ++A AG VALWGSAG+ISAIDR GIGYTGWF YKN++FKPDRE L K+K T K+I G Sbjct: 77 EAETTELPEIVKTAQEAWEKVDDKYAIGSLAFAGVVALWGSAGMISAIDRLPLVPGVLELVGIGYTGWFTYKNLVFKPDREALFEKVKSTYKDILG 172
BLAST of Pisum_sativum_v1_Contig3026 vs. TAIR peptide
Match: AT1G52220.1 (| Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: photosystem I P subunit (TAIR:AT2G46820.2); Has 291 Blast hits to 291 proteins in 50 species: Archae - 0; Bacteria - 90; Metazoa - 0; Fungi - 0; Plants - 200; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr1:19453770-19454605 REVERSE LENGTH=156) HSP 1 Score: 66.2402 bits (160), Expect = 6.069e-12 Identity = 33/84 (39.29%), Postives = 49/84 (58.33%), Query Frame = -1 Query: 100 TIQETWEKVED*YAVSTIAVAGAVALWGSAGVISAIDRXXXXXXXXXXXGIGYTGWFAYKNIIFKPDREVLVRKIKGTVKEITG 351 TIQ W+K ED + + AG VALW S +I+AID+ GI ++ WF Y+ ++FKPDR+ L + +K +V +I G Sbjct: 72 TIQNVWDKSEDRLGLIGLGFAGIVALWASLNLITAIDKLPVISSGFELVGILFSTWFTYRYLLFKPDRQELSKIVKKSVADILG 155
BLAST of Pisum_sativum_v1_Contig3026 vs. TAIR peptide
Match: AT1G52220.2 (| Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: photosystem I P subunit (TAIR:AT2G46820.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr1:19453770-19454605 REVERSE LENGTH=155) HSP 1 Score: 61.6178 bits (148), Expect = 1.495e-10 Identity = 30/81 (37.04%), Postives = 47/81 (58.02%), Query Frame = -1 Query: 100 ETWEKVED*YAVSTIAVAGAVALWGSAGVISAIDRXXXXXXXXXXXGIGYTGWFAYKNIIFKPDREVLVRKIKGTVKEITG 342 + W+K ED + + AG VALW S +I+AID+ GI ++ WF Y+ ++FKPDR+ L + +K +V +I G Sbjct: 74 QNWDKSEDRLGLIGLGFAGIVALWASLNLITAIDKLPVISSGFELVGILFSTWFTYRYLLFKPDRQELSKIVKKSVADILG 154
BLAST of Pisum_sativum_v1_Contig3026 vs. TAIR peptide
Match: AT4G01150.1 (| Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, plastoglobule, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G38100.1); Has 323 Blast hits to 323 proteins in 59 species: Archae - 0; Bacteria - 107; Metazoa - 0; Fungi - 0; Plants - 206; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). | chr4:493692-494668 FORWARD LENGTH=164) HSP 1 Score: 57.7658 bits (138), Expect = 2.158e-9 Identity = 31/98 (31.63%), Postives = 51/98 (52.04%), Query Frame = -1 Query: 100 AEQLSVSDSPEFL*TIQETWEKVED*YAVSTIAVAGAVALWGSAGVISAIDRXXXXXXXXXXXGIGYTGWFAYKNIIFKPDREVLVRKIKGTVKEITG 393 +E+ S D+ E + ++E W+ +E+ V VA+W S+ V+ AI+ G+GYTGWF Y+ ++FK R+ L I+ K+I G Sbjct: 65 SEETSSIDTNELITDLKEKWDGLENKSTVLIYGGGAIVAVWLSSIVVGAINSVPLLPKVMELVGLGYTGWFVYRYLLFKSSRKELAEDIESLKKKIAG 162 The following BLAST results are available for this feature:
BLAST of Pisum_sativum_v1_Contig3026 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Swissprot) Total hits: 2
BLAST of Pisum_sativum_v1_Contig3026 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl) Total hits: 10
BLAST of Pisum_sativum_v1_Contig3026 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide) Total hits: 5
InterPro
Analysis Name: InterProScan analysis for Pisum sativum unigene v1
Date Performed: 2010-12-29
Sequences
The
following sequences are available for this feature:
contig sequence >Pisum_sativum_v1_Contig3026 ID=Pisum_sativum_v1_Contig3026; Name=Pisum_sativum_v1_Contig3026; organism=Pisum sativum; type=contig; length=393bpback to top |