Pisum_sativum_v1_Contig3029

Contig Overview
NamePisum_sativum_v1_Contig3029
Unique NamePisum_sativum_v1_Contig3029
Typecontig
OrganismPisum sativum (pea)
Sequence length526
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CD858719ESTCD858719:1..464 -
EX569427ESTEX569427:52..526 +
EX569428ESTEX569428:63..526 +
Unigenes
This contig is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Pisum sativum unigene v1Pisum sativum unigene v1contig
Analyses
This contig is derived from or has results from the following analyses
Analysis NameDate Performed
Pisum sativum unigene v12010-12-27
Homology Analysis: Pisum sativum unigene v1 vs Trembl2010-12-28
Homology Analysis: Pisum sativum unigene v1 vs Swissprot2010-12-28
Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide2011-02-03
Relationships

The following EST feature(s) are a part of this contig:

Feature NameUnique NameSpeciesType
CD858719CD858719Pisum sativumEST
EX569427EX569427Pisum sativumEST
EX569428EX569428Pisum sativumEST


Homology
[Close]
BLAST of Pisum_sativum_v1_Contig3029 vs. SwissProt
Match: SSY1_WHEAT (Starch synthase 1, chloroplastic/amyloplastic OS=Triticum aestivum GN=WSSI-2 PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 6.038e-14
Identity = 33/51 (64.71%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:   16 WL*DTPFLTLHEH*SSWEGLMKRGMTRDYTWENAATQYEQIIEWAFMDPPY 168
            W   T   T  EH  SWEGLMKRGMT+D+TW++AA QYEQI EWAF+D PY
Sbjct:  595 WALRTAMSTFREHKPSWEGLMKRGMTKDHTWDHAAEQYEQIFEWAFVDQPY 645
[Close]
BLAST of Pisum_sativum_v1_Contig3029 vs. SwissProt
Match: SSY1_SOLTU (Soluble starch synthase 1, chloroplastic/amyloplastic OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 7.886e-14
Identity = 32/43 (74.42%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:   40 TLHEH*SSWEGLMKRGMTRDYTWENAATQYEQIIEWAFMDPPY 168
            T  EH SSWEGLM+RGM RDY+WENAA QYEQ+  WAF+DPPY
Sbjct:  597 TYTEHKSSWEGLMRRGMGRDYSWENAAIQYEQVFTWAFIDPPY 639
[Close]
BLAST of Pisum_sativum_v1_Contig3029 vs. SwissProt
Match: SSY1_ORYSJ (Soluble starch synthase 1, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=Os06g0160700 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.030e-13
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 1 
Query:   40 TLHEH*SSWEGLMKRGMTRDYTWENAATQYEQIIEWAFMDPPY 168
            T  EH SSWEGLMKRGM+ D+TW++AA+QYEQI EWAFMD PY
Sbjct:  597 TYREHKSSWEGLMKRGMSSDFTWDHAASQYEQIFEWAFMDQPY 639
[Close]
BLAST of Pisum_sativum_v1_Contig3029 vs. SwissProt
Match: SSY1_ORYSI (Soluble starch synthase 1, chloroplastic/amyloplastic OS=Oryza sativa subsp. indica GN=OsI_021017 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.030e-13
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 1 
Query:   40 TLHEH*SSWEGLMKRGMTRDYTWENAATQYEQIIEWAFMDPPY 168
            T  EH SSWEGLMKRGM+ D+TW++AA+QYEQI EWAFMD PY
Sbjct:  597 TYREHKSSWEGLMKRGMSSDFTWDHAASQYEQIFEWAFMDQPY 639
[Close]
BLAST of Pisum_sativum_v1_Contig3029 vs. SwissProt
Match: SSY1_ARATH (Soluble starch synthase, chloroplastic/amyloplastic OS=Arabidopsis thaliana GN=At5g24300 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.345e-13
Identity = 30/43 (69.77%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:   40 TLHEH*SSWEGLMKRGMTRDYTWENAATQYEQIIEWAFMDPPY 168
            T  E+  SWEGLM+RGMTR+Y+WENAA QYEQ+ +W FMDPPY
Sbjct:  608 TYREYKQSWEGLMRRGMTRNYSWENAAVQYEQVFQWVFMDPPY 650
[Close]
BLAST of Pisum_sativum_v1_Contig3029 vs. TrEMBL
Match: Q75T80_PHAVU (Starch synthase I OS=Phaseolus vulgaris GN=pvss1 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.682e-15
Identity = 36/44 (81.82%), Postives = 39/44 (88.64%), Query Frame = 1 
Query:   40 TLHEH*SSWEGLMKRGMTRDYTWENAATQYEQIIEWAFMDPPYC 171
            T +EH SSWEGLM RGMT+DYTW NAATQYEQIIEWAF+ PPYC
Sbjct:  602 TYNEHKSSWEGLMLRGMTKDYTWVNAATQYEQIIEWAFIGPPYC 645

HSP 2 Score: 22.3274 bits (46), Expect = 1.682e-15
Identity = 10/11 (90.91%), Postives = 10/11 (90.91%), Query Frame = 3 
Query:    3 ESMLVALRYAI 35
            ESML ALRYAI
Sbjct:  590 ESMLTALRYAI 600
[Close]
BLAST of Pisum_sativum_v1_Contig3029 vs. TrEMBL
Match: Q9SQH0_AEGTA (Starch synthase I OS=Aegilops tauschii PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.866e-13
Identity = 33/51 (64.71%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:   16 WL*DTPFLTLHEH*SSWEGLMKRGMTRDYTWENAATQYEQIIEWAFMDPPY 168
            W   T   T  EH  SWEGLMKRGMT+D+TW++AA QYEQI EWAF+D PY
Sbjct:  595 WALRTAMSTFREHKPSWEGLMKRGMTKDHTWDHAAEQYEQIFEWAFVDQPY 645
[Close]
BLAST of Pisum_sativum_v1_Contig3029 vs. TrEMBL
Match: Q9SQG9_WHEAT (Starch synthase I OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.866e-13
Identity = 33/51 (64.71%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:   16 WL*DTPFLTLHEH*SSWEGLMKRGMTRDYTWENAATQYEQIIEWAFMDPPY 168
            W   T   T  EH  SWEGLMKRGMT+D+TW++AA QYEQI EWAF+D PY
Sbjct:  595 WALRTAMSTFREHKPSWEGLMKRGMTKDHTWDHAAEQYEQIFEWAFVDQPY 645
[Close]
BLAST of Pisum_sativum_v1_Contig3029 vs. TrEMBL
Match: Q9M5A3_HORVU (Starch synthase I OS=Hordeum vulgare GN=SSI PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.866e-13
Identity = 33/51 (64.71%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:   16 WL*DTPFLTLHEH*SSWEGLMKRGMTRDYTWENAATQYEQIIEWAFMDPPY 168
            W   T   T  EH  SWEGLMKRGMT+D+TW++AA QYEQI EWAF+D PY
Sbjct:  591 WALRTAISTFREHKPSWEGLMKRGMTKDHTWDHAAEQYEQIFEWAFVDQPY 641
[Close]
BLAST of Pisum_sativum_v1_Contig3029 vs. TrEMBL
Match: Q9LEC0_WHEAT (Starch synthase I-1 OS=Triticum aestivum GN=wSsI-1 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.866e-13
Identity = 33/51 (64.71%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:   16 WL*DTPFLTLHEH*SSWEGLMKRGMTRDYTWENAATQYEQIIEWAFMDPPY 168
            W   T   T  EH  SWEGLMKRGMT+D+TW++AA QYEQI EWAF+D PY
Sbjct:  595 WALRTAMSTFREHKPSWEGLMKRGMTKDHTWDHAAEQYEQIFEWAFVDQPY 645
[Close]
BLAST of Pisum_sativum_v1_Contig3029 vs. TrEMBL
Match: C3W8L3_HORVD (Soluble starch synthase (Fragment) OS=Hordeum vulgare var. distichum GN=SSI PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.866e-13
Identity = 33/51 (64.71%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:   16 WL*DTPFLTLHEH*SSWEGLMKRGMTRDYTWENAATQYEQIIEWAFMDPPY 168
            W   T   T  EH  SWEGLMKRGMT+D+TW++AA QYEQI EWAF+D PY
Sbjct:  463 WALRTAISTFREHKPSWEGLMKRGMTKDHTWDHAAEQYEQIFEWAFVDQPY 513
[Close]
BLAST of Pisum_sativum_v1_Contig3029 vs. TrEMBL
Match: D3U2H8_ORYSA (Starch synthase OS=Oryza sativa PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.342e-12
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 1 
Query:   40 TLHEH*SSWEGLMKRGMTRDYTWENAATQYEQIIEWAFMDPPY 168
            T  EH SSWEGLMKRGM+ D+TW++AA+QYEQI EWAFMD PY
Sbjct:  597 TYREHKSSWEGLMKRGMSSDFTWDHAASQYEQIFEWAFMDQPY 639
[Close]
BLAST of Pisum_sativum_v1_Contig3029 vs. TrEMBL
Match: D0TZM8_ORYSI (Soluble starch synthase I OS=Oryza sativa subsp. indica GN=SSI PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.342e-12
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 1 
Query:   40 TLHEH*SSWEGLMKRGMTRDYTWENAATQYEQIIEWAFMDPPY 168
            T  EH SSWEGLMKRGM+ D+TW++AA+QYEQI EWAFMD PY
Sbjct:  597 TYREHKSSWEGLMKRGMSSDFTWDHAASQYEQIFEWAFMDQPY 639
[Close]
BLAST of Pisum_sativum_v1_Contig3029 vs. TrEMBL
Match: D0TZM7_ORYSI (Soluble starch synthase I OS=Oryza sativa subsp. indica GN=SSI PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.342e-12
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 1 
Query:   40 TLHEH*SSWEGLMKRGMTRDYTWENAATQYEQIIEWAFMDPPY 168
            T  EH SSWEGLMKRGM+ D+TW++AA+QYEQI EWAFMD PY
Sbjct:  597 TYREHKSSWEGLMKRGMSSDFTWDHAASQYEQIFEWAFMDQPY 639
[Close]
BLAST of Pisum_sativum_v1_Contig3029 vs. TrEMBL
Match: D0TZM6_ORYSI (Soluble starch synthase I OS=Oryza sativa subsp. indica GN=SSI PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.342e-12
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 1 
Query:   40 TLHEH*SSWEGLMKRGMTRDYTWENAATQYEQIIEWAFMDPPY 168
            T  EH SSWEGLMKRGM+ D+TW++AA+QYEQI EWAFMD PY
Sbjct:  597 TYREHKSSWEGLMKRGMSSDFTWDHAASQYEQIFEWAFMDQPY 639
[Close]
BLAST of Pisum_sativum_v1_Contig3029 vs. TAIR peptide
Match: AT5G24300.2 (| Symbols: SSI1 | Glycogen/starch synthases, ADP-glucose type | chr5:8266934-8270860 FORWARD LENGTH=652)

HSP 1 Score: 75.8702 bits (185), Expect = 1.454e-14
Identity = 30/43 (69.77%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:   40 TLHEH*SSWEGLMKRGMTRDYTWENAATQYEQIIEWAFMDPPY 168
            T  E+  SWEGLM+RGMTR+Y+WENAA QYEQ+ +W FMDPPY
Sbjct:  608 TYREYKQSWEGLMRRGMTRNYSWENAAVQYEQVFQWVFMDPPY 650
[Close]
BLAST of Pisum_sativum_v1_Contig3029 vs. TAIR peptide
Match: AT5G24300.1 (| Symbols: SSI1, SSI, ATSS1 | Glycogen/starch synthases, ADP-glucose type | chr5:8266934-8270860 FORWARD LENGTH=652)

HSP 1 Score: 75.8702 bits (185), Expect = 1.454e-14
Identity = 30/43 (69.77%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:   40 TLHEH*SSWEGLMKRGMTRDYTWENAATQYEQIIEWAFMDPPY 168
            T  E+  SWEGLM+RGMTR+Y+WENAA QYEQ+ +W FMDPPY
Sbjct:  608 TYREYKQSWEGLMRRGMTRNYSWENAAVQYEQVFQWVFMDPPY 650
The following BLAST results are available for this feature:
BLAST of Pisum_sativum_v1_Contig3029 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Swissprot)
Total hits: 5
Match NameE-valueIdentityDescription
SSY1_WHEAT6.038e-1464.71Starch synthase 1, chloroplastic/amyloplastic OS=T... [more]
SSY1_SOLTU7.886e-1474.42Soluble starch synthase 1, chloroplastic/amyloplas... [more]
SSY1_ORYSJ1.030e-1374.42Soluble starch synthase 1, chloroplastic/amyloplas... [more]
SSY1_ORYSI1.030e-1374.42Soluble starch synthase 1, chloroplastic/amyloplas... [more]
SSY1_ARATH1.345e-1369.77Soluble starch synthase, chloroplastic/amyloplasti... [more]
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BLAST of Pisum_sativum_v1_Contig3029 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
Q75T80_PHAVU1.682e-1581.82Starch synthase I OS=Phaseolus vulgaris GN=pvss1 P... [more]
Q9SQH0_AEGTA7.866e-1364.71Starch synthase I OS=Aegilops tauschii PE=3 SV=1[more]
Q9SQG9_WHEAT7.866e-1364.71Starch synthase I OS=Triticum aestivum PE=2 SV=1[more]
Q9M5A3_HORVU7.866e-1364.71Starch synthase I OS=Hordeum vulgare GN=SSI PE=3 S... [more]
Q9LEC0_WHEAT7.866e-1364.71Starch synthase I-1 OS=Triticum aestivum GN=wSsI-1... [more]
C3W8L3_HORVD7.866e-1364.71Soluble starch synthase (Fragment) OS=Hordeum vulg... [more]
D3U2H8_ORYSA1.342e-1274.42Starch synthase OS=Oryza sativa PE=2 SV=1[more]
D0TZM8_ORYSI1.342e-1274.42Soluble starch synthase I OS=Oryza sativa subsp. i... [more]
D0TZM7_ORYSI1.342e-1274.42Soluble starch synthase I OS=Oryza sativa subsp. i... [more]
D0TZM6_ORYSI1.342e-1274.42Soluble starch synthase I OS=Oryza sativa subsp. i... [more]
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BLAST of Pisum_sativum_v1_Contig3029 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide)
Total hits: 2
Match NameE-valueIdentityDescription
AT5G24300.21.454e-1469.77| Symbols: SSI1 | Glycogen/starch synthases, ADP-g... [more]
AT5G24300.11.454e-1469.77| Symbols: SSI1, SSI, ATSS1 | Glycogen/starch synt... [more]
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Sequences
The following sequences are available for this feature:

contig sequence

>Pisum_sativum_v1_Contig3029 ID=Pisum_sativum_v1_Contig3029; Name=Pisum_sativum_v1_Contig3029; organism=Pisum sativum; type=contig; length=526bp
AGGAGAGCATGTTAGTGGCTCTAAGATACGCCATTCTTAACGCTTCACGA
ACACTAGTCTTCATGGGAGGGATTAATGAAAAGAGGTATGACGAGAGATT
ACACGTGGGAAAACGCCGCCACTCAATACGAGCAAATTATTGAGTGGGCA
TTCATGGATCCGCCCTATTGCTGAAAGCTGAAATGAAGTTGGCACAAAGC
ATCAAAGATCTACACAAGGCTTTCCTTCAATATCAAGGCTCGAACGAGAA
TAATGGTAATTGTGACCGATTGATAACAGGAAAGTGGCCTTGAGACCAGC
TGCTTGCTGTAATTTTTACCATTAAACACAATTTTTTCCTACCATTTGTT
GAGGGGTGCAGAGCAAACAATGTATACTACCCTTGTTGGTCTGTCTGTAT
TCTATGATAGGTGAATAAAATCAGGTAAGTAGTCCTCTAGAATATTTTTT
ATATTTATTGTAGTACCACGTTGTTTGTAACTATGTATGAAGCAATGGTG
AATGTTACTGGATACAATCTTGAGTT
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