Pisum_sativum_v1_Contig3067

Contig Overview


Name	Pisum_sativum_v1_Contig3067
Unique Name	Pisum_sativum_v1_Contig3067
Type	contig
Organism	Pisum sativum (pea)
Sequence length	632

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
AJ419714	EST	AJ419714:1..312 -
AJ308191	EST	AJ308191:1..312 -
EX569377	EST	EX569377:52..592 +
FG536106	EST	FG536106:79..632 +
FG528834	EST	FG528834:80..632 +
EX568951	EST	EX568951:152..632 +
FG534297	EST	FG534297:80..632 +

Unigenes

This contig is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Pisum sativum unigene v1	Pisum sativum unigene v1	contig

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Pisum sativum unigene v1	2010-12-27
KEGG analysis for Pisum sativum unigene v1	2011-01-05
Homology Analysis: Pisum sativum unigene v1 vs Trembl	2010-12-28
Homology Analysis: Pisum sativum unigene v1 vs Swissprot	2010-12-28
Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide	2011-02-03
InterProScan analysis for Pisum sativum unigene v1	2010-12-29

Relationships

The following EST feature(s) are a part of this contig:


Feature Name	Unique Name	Species	Type
AJ419714	AJ419714	Pisum sativum	EST
AJ308191	AJ308191	Pisum sativum	EST
EX569377	EX569377	Pisum sativum	EST
FG536106	FG536106	Pisum sativum	EST
FG528834	FG528834	Pisum sativum	EST
EX568951	EX568951	Pisum sativum	EST
FG534297	FG534297	Pisum sativum	EST

Homology

[Close]

BLAST of Pisum_sativum_v1_Contig3067 vs. SwissProt
Match: RS241_ARATH (40S ribosomal protein S24-1 OS=Arabidopsis thaliana GN=RPS24A PE=2 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.394e-59
Identity = 111/122 (90.98%), Postives = 121/122 (99.18%), Query Frame = 3

Query:   54 MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARIYDVKDPNTVFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGV 419
            MA+KAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLAR+Y+VKDPN +FVFKFRTHFGGGKS+GFGLIYD+VE+AKK+EPKYRLIRNGLDTK+EKSRKQ+KERKNRAKKIRGV
Sbjct:    1 MAEKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSSGFGLIYDTVESAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIRGV 122

[Close]

BLAST of Pisum_sativum_v1_Contig3067 vs. SwissProt
Match: RS242_ARATH (40S ribosomal protein S24-2 OS=Arabidopsis thaliana GN=RPS24B PE=2 SV=2)

HSP 1 Score: 224.942 bits (572), Expect = 2.629e-58
Identity = 108/122 (88.52%), Postives = 119/122 (97.54%), Query Frame = 3

Query:   54 MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARIYDVKDPNTVFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGV 419
            MA+KAVTIRTR FMTNRLL+RKQFVIDVLHPGRANVSKAELKEKLAR+Y+VKDPN +F FKFRTHFGGGKS+G+GLIYD+VENAKK+EPKYRLIRNGLDTK+EKSRKQ+KERKNRAKKIRGV
Sbjct:    1 MAEKAVTIRTRNFMTNRLLARKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFCFKFRTHFGGGKSSGYGLIYDTVENAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIRGV 122

[Close]

BLAST of Pisum_sativum_v1_Contig3067 vs. SwissProt
Match: RS24_DICDI (40S ribosomal protein S24 OS=Dictyostelium discoideum GN=rps24 PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.229e-40
Identity = 79/118 (66.95%), Postives = 97/118 (82.20%), Query Frame = 3

Query:   54 MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARIYDVKDPNTVFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKK 407
            M   AV +RTRK +TNRLLSRKQFV++V+HPG+ANVSK +LK  +A+++ V DP T+F+F F+T FGGGKSTGFGLIYD++E AKKYEPKYRL R GL TK + SRKQ KE+KNR KK
Sbjct:    1 MDKAAVVVRTRKVLTNRLLSRKQFVVEVVHPGKANVSKKDLKTTIAKLHKVADPETIFLFGFKTDFGGGKSTGFGLIYDNLEIAKKYEPKYRLARAGLYTKPQTSRKQRKEKKNRLKK 118

[Close]

BLAST of Pisum_sativum_v1_Contig3067 vs. SwissProt
Match: RS24_RAT (40S ribosomal protein S24 OS=Rattus norvegicus GN=Rps24 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 4.217e-40
Identity = 81/116 (69.83%), Postives = 96/116 (82.76%), Query Frame = 3

Query:   69 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARIYDVKDPNTVFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRG 416
            VTIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA++Y    P+ +FVF FRTHFGGGK+TGFG+IYDS++ AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTT-PDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRG 119

[Close]

BLAST of Pisum_sativum_v1_Contig3067 vs. SwissProt
Match: RS24_PONAB (40S ribosomal protein S24 OS=Pongo abelii GN=RPS24 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 4.217e-40
Identity = 81/116 (69.83%), Postives = 96/116 (82.76%), Query Frame = 3

Query:   69 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARIYDVKDPNTVFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRG 416
            VTIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA++Y    P+ +FVF FRTHFGGGK+TGFG+IYDS++ AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTT-PDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRG 119

[Close]

BLAST of Pisum_sativum_v1_Contig3067 vs. SwissProt
Match: RS24_MOUSE (40S ribosomal protein S24 OS=Mus musculus GN=Rps24 PE=1 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 4.217e-40
Identity = 81/116 (69.83%), Postives = 96/116 (82.76%), Query Frame = 3

Query:   69 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARIYDVKDPNTVFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRG 416
            VTIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA++Y    P+ +FVF FRTHFGGGK+TGFG+IYDS++ AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTT-PDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRG 119

[Close]

BLAST of Pisum_sativum_v1_Contig3067 vs. SwissProt
Match: RS24_MESAU (40S ribosomal protein S24 OS=Mesocricetus auratus GN=RPS24 PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 4.217e-40
Identity = 81/116 (69.83%), Postives = 96/116 (82.76%), Query Frame = 3

Query:   69 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARIYDVKDPNTVFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRG 416
            VTIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA++Y    P+ +FVF FRTHFGGGK+TGFG+IYDS++ AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTT-PDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRG 119

[Close]

BLAST of Pisum_sativum_v1_Contig3067 vs. SwissProt
Match: RS24_HUMAN (40S ribosomal protein S24 OS=Homo sapiens GN=RPS24 PE=1 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 4.217e-40
Identity = 81/116 (69.83%), Postives = 96/116 (82.76%), Query Frame = 3

Query:   69 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARIYDVKDPNTVFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRG 416
            VTIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA++Y    P+ +FVF FRTHFGGGK+TGFG+IYDS++ AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTT-PDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRG 119

[Close]

BLAST of Pisum_sativum_v1_Contig3067 vs. SwissProt
Match: RS24_BOVIN (40S ribosomal protein S24 OS=Bos taurus GN=RPS24 PE=2 SV=2)

HSP 1 Score: 164.466 bits (415), Expect = 4.217e-40
Identity = 81/116 (69.83%), Postives = 96/116 (82.76%), Query Frame = 3

Query:   69 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARIYDVKDPNTVFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRG 416
            VTIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA++Y    P+ +FVF FRTHFGGGK+TGFG+IYDS++ AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTT-PDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRG 119

[Close]

BLAST of Pisum_sativum_v1_Contig3067 vs. SwissProt
Match: RS24_XENLA (40S ribosomal protein S24 OS=Xenopus laevis GN=rps24 PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 9.395e-40
Identity = 80/116 (68.97%), Postives = 96/116 (82.76%), Query Frame = 3

Query:   69 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARIYDVKDPNTVFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRG 416
            VTIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA++Y    P+ +FVF FRTHFGGGK+TGFG+IYDS++ AKK EPK+RL ++GL  K + SRKQ KERKNR KK+RG
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTT-PDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLAKHGLYEKKKTSRKQRKERKNRMKKVRG 119

[Close]

BLAST of Pisum_sativum_v1_Contig3067 vs. TrEMBL
Match: B7FMK4_MEDTR (40S ribosomal protein S24 OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 1.023e-62
Identity = 121/122 (99.18%), Postives = 122/122 (100.00%), Query Frame = 3

Query:   54 MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARIYDVKDPNTVFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGV 419
            MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARIYDVKDPNTVFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRL+RNGLDTKVEKSRKQMKERKNRAKKIRGV
Sbjct:    1 MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARIYDVKDPNTVFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLVRNGLDTKVEKSRKQMKERKNRAKKIRGV 122

[Close]

BLAST of Pisum_sativum_v1_Contig3067 vs. TrEMBL
Match: C6SXD3_SOYBN (40S ribosomal protein S24 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 1.131e-61
Identity = 118/122 (96.72%), Postives = 122/122 (100.00%), Query Frame = 3

Query:   54 MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARIYDVKDPNTVFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGV 419
            MADKAVTIRTRKFMTNRLLSRKQFV+DVLHPGRANVSKAELKEKLAR+YDVKDPNTVFVFKFRTHFGGGKSTGFGLIYD++ENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGV
Sbjct:    1 MADKAVTIRTRKFMTNRLLSRKQFVVDVLHPGRANVSKAELKEKLARMYDVKDPNTVFVFKFRTHFGGGKSTGFGLIYDTMENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGV 122

[Close]

BLAST of Pisum_sativum_v1_Contig3067 vs. TrEMBL
Match: C6TAW2_SOYBN (40S ribosomal protein S24 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 1.477e-61
Identity = 118/122 (96.72%), Postives = 122/122 (100.00%), Query Frame = 3

Query:   54 MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARIYDVKDPNTVFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGV 419
            MADKAVTIRTRKFMTNRLLSRKQFV+DVLHPGRANVSKAELKEKLAR+Y+VKDPNTVFVFKFRTHFGGGKSTGFGLIYD+VENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGV
Sbjct:    1 MADKAVTIRTRKFMTNRLLSRKQFVVDVLHPGRANVSKAELKEKLARMYEVKDPNTVFVFKFRTHFGGGKSTGFGLIYDTVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGV 122

[Close]

BLAST of Pisum_sativum_v1_Contig3067 vs. TrEMBL
Match: C6SVB8_SOYBN (40S ribosomal protein S24 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 5.614e-61
Identity = 118/122 (96.72%), Postives = 120/122 (98.36%), Query Frame = 3

Query:   54 MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARIYDVKDPNTVFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGV 419
            MADKAVTIRTRKFMTNRLLSRKQFV+DVLHPGRANVSKAELKEKL R+YDVKD NTVFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGV
Sbjct:    1 MADKAVTIRTRKFMTNRLLSRKQFVVDVLHPGRANVSKAELKEKLGRMYDVKDTNTVFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGV 122

[Close]

BLAST of Pisum_sativum_v1_Contig3067 vs. TrEMBL
Match: C6SVP0_SOYBN (40S ribosomal protein S24 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.633e-60
Identity = 116/122 (95.08%), Postives = 120/122 (98.36%), Query Frame = 3

Query:   54 MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARIYDVKDPNTVFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGV 419
            MADKAVTIRTRKFMTNRLLSRKQF++DVLHPGRANVSKAELKE+L R+YDVKD NTVFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGV
Sbjct:    1 MADKAVTIRTRKFMTNRLLSRKQFIVDVLHPGRANVSKAELKERLGRMYDVKDTNTVFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGV 122

[Close]

BLAST of Pisum_sativum_v1_Contig3067 vs. TrEMBL
Match: B9RES8_RICCO (40S ribosomal protein S24 OS=Ricinus communis GN=RCOM_1428520 PE=3 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.633e-60
Identity = 114/122 (93.44%), Postives = 121/122 (99.18%), Query Frame = 3

Query:   54 MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARIYDVKDPNTVFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGV 419
            MADKAVTIRTRKFMTNRLLSRKQF+IDVLHPGRANVSKAELKEKL+ IY+VKDPNT+FVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTK+EKSRKQMKERKNR+KK+RGV
Sbjct:    1 MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRANVSKAELKEKLSSIYEVKDPNTIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKIEKSRKQMKERKNRSKKVRGV 122

[Close]

BLAST of Pisum_sativum_v1_Contig3067 vs. TrEMBL
Match: B9RWY8_RICCO (40S ribosomal protein S24 OS=Ricinus communis GN=RCOM_1707070 PE=3 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 2.133e-60
Identity = 115/122 (94.26%), Postives = 120/122 (98.36%), Query Frame = 3

Query:   54 MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARIYDVKDPNTVFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGV 419
            MADKAVTIRTRKFMTNRLLSRKQF+IDVLHPGRANVSKAELKEKLA IY+VKDPN +FVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNR+KK+RGV
Sbjct:    1 MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRANVSKAELKEKLASIYEVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRSKKVRGV 122

[Close]

BLAST of Pisum_sativum_v1_Contig3067 vs. TrEMBL
Match: C6THP2_SOYBN (40S ribosomal protein S24 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 4.752e-60
Identity = 115/122 (94.26%), Postives = 119/122 (97.54%), Query Frame = 3

Query:   54 MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARIYDVKDPNTVFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGV 419
            MADKAVTIRTRKFMTNRLLSRKQ ++DVLHPGRANVSKAELKEKL R+YDVKD NTVFVFKFRTHFGGGKSTGFGL+YDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGV
Sbjct:    1 MADKAVTIRTRKFMTNRLLSRKQLIVDVLHPGRANVSKAELKEKLGRMYDVKDTNTVFVFKFRTHFGGGKSTGFGLVYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGV 122

[Close]

BLAST of Pisum_sativum_v1_Contig3067 vs. TrEMBL
Match: A5BH65_VITVI (40S ribosomal protein S24 OS=Vitis vinifera GN=VITISV_035625 PE=3 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 3.080e-59
Identity = 112/122 (91.80%), Postives = 120/122 (98.36%), Query Frame = 3

Query:   54 MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARIYDVKDPNTVFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGV 419
            MADKAVTIRTRKFMTNRLLSRKQF+IDVLHPGR NVSKAELK+KLA +Y+VKDPN++FVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNR+KK+RGV
Sbjct:    1 MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRPNVSKAELKDKLASMYEVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRSKKVRGV 122

[Close]

BLAST of Pisum_sativum_v1_Contig3067 vs. TrEMBL
Match: B9I8B3_POPTR (40S ribosomal protein S24 (Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_241120 PE=3 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 4.023e-59
Identity = 111/122 (90.98%), Postives = 120/122 (98.36%), Query Frame = 3

Query:   54 MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARIYDVKDPNTVFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGV 419
            MADKAVTIRTRKFMTNRLLSRKQF+IDVLHPGRANVSKAELKEKLA +Y+VKDPNT+FVFKFRTHFGGGKSTGFGLIYD+V+NAKKYEPKYRLIRNGL TK+EKSRKQ+KERKNRAKK+RGV
Sbjct:    1 MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRANVSKAELKEKLANLYEVKDPNTIFVFKFRTHFGGGKSTGFGLIYDTVDNAKKYEPKYRLIRNGLATKIEKSRKQLKERKNRAKKVRGV 122

[Close]

BLAST of Pisum_sativum_v1_Contig3067 vs. TAIR peptide
Match: AT3G04920.1 (| Symbols: | Ribosomal protein S24e family protein | chr3:1360989-1362065 FORWARD LENGTH=133)

HSP 1 Score: 229.18 bits (583), Expect = 1.437e-60
Identity = 111/122 (90.98%), Postives = 121/122 (99.18%), Query Frame = 3

Query:   54 MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARIYDVKDPNTVFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGV 419
            MA+KAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLAR+Y+VKDPN +FVFKFRTHFGGGKS+GFGLIYD+VE+AKK+EPKYRLIRNGLDTK+EKSRKQ+KERKNRAKKIRGV
Sbjct:    1 MAEKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSSGFGLIYDTVESAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIRGV 122

[Close]

BLAST of Pisum_sativum_v1_Contig3067 vs. TAIR peptide
Match: AT5G28060.1 (| Symbols: | Ribosomal protein S24e family protein | chr5:10069791-10070792 REVERSE LENGTH=133)

HSP 1 Score: 224.942 bits (572), Expect = 2.710e-59
Identity = 108/122 (88.52%), Postives = 119/122 (97.54%), Query Frame = 3

Query:   54 MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARIYDVKDPNTVFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGV 419
            MA+KAVTIRTR FMTNRLL+RKQFVIDVLHPGRANVSKAELKEKLAR+Y+VKDPN +F FKFRTHFGGGKS+G+GLIYD+VENAKK+EPKYRLIRNGLDTK+EKSRKQ+KERKNRAKKIRGV
Sbjct:    1 MAEKAVTIRTRNFMTNRLLARKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFCFKFRTHFGGGKSSGYGLIYDTVENAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIRGV 122

The following BLAST results are available for this feature:

BLAST of Pisum_sativum_v1_Contig3067 vs. SwissProt
BLAST of Pisum_sativum_v1_Contig3067 vs. TrEMBL
BLAST of Pisum_sativum_v1_Contig3067 vs. TAIR peptide

BLAST of Pisum_sativum_v1_Contig3067 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Swissprot)
Total hits: 10


Match Name	E-value	Identity	Description
RS241_ARATH	1.394e-59	90.98	40S ribosomal protein S24-1 OS=Arabidopsis thalian...	[more]
RS242_ARATH	2.629e-58	88.52	40S ribosomal protein S24-2 OS=Arabidopsis thalian...	[more]
RS24_DICDI	3.229e-40	66.95	40S ribosomal protein S24 OS=Dictyostelium discoid...	[more]
RS24_RAT	4.217e-40	69.83	40S ribosomal protein S24 OS=Rattus norvegicus GN=...	[more]
RS24_PONAB	4.217e-40	69.83	40S ribosomal protein S24 OS=Pongo abelii GN=RPS24...	[more]
RS24_MOUSE	4.217e-40	69.83	40S ribosomal protein S24 OS=Mus musculus GN=Rps24...	[more]
RS24_MESAU	4.217e-40	69.83	40S ribosomal protein S24 OS=Mesocricetus auratus ...	[more]
RS24_HUMAN	4.217e-40	69.83	40S ribosomal protein S24 OS=Homo sapiens GN=RPS24...	[more]
RS24_BOVIN	4.217e-40	69.83	40S ribosomal protein S24 OS=Bos taurus GN=RPS24 P...	[more]
RS24_XENLA	9.395e-40	68.97	40S ribosomal protein S24 OS=Xenopus laevis GN=rps...	[more]

BLAST of Pisum_sativum_v1_Contig3067 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
B7FMK4_MEDTR	1.023e-62	99.18	40S ribosomal protein S24 OS=Medicago truncatula P...	[more]
C6SXD3_SOYBN	1.131e-61	96.72	40S ribosomal protein S24 OS=Glycine max PE=2 SV=1	[more]
C6TAW2_SOYBN	1.477e-61	96.72	40S ribosomal protein S24 OS=Glycine max PE=2 SV=1	[more]
C6SVB8_SOYBN	5.614e-61	96.72	40S ribosomal protein S24 OS=Glycine max PE=2 SV=1	[more]
C6SVP0_SOYBN	1.633e-60	95.08	40S ribosomal protein S24 OS=Glycine max PE=2 SV=1	[more]
B9RES8_RICCO	1.633e-60	93.44	40S ribosomal protein S24 OS=Ricinus communis GN=R...	[more]
B9RWY8_RICCO	2.133e-60	94.26	40S ribosomal protein S24 OS=Ricinus communis GN=R...	[more]
C6THP2_SOYBN	4.752e-60	94.26	40S ribosomal protein S24 OS=Glycine max PE=2 SV=1	[more]
A5BH65_VITVI	3.080e-59	91.80	40S ribosomal protein S24 OS=Vitis vinifera GN=VIT...	[more]
B9I8B3_POPTR	4.023e-59	90.98	40S ribosomal protein S24 (Fragment) OS=Populus tr...	[more]

BLAST of Pisum_sativum_v1_Contig3067 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide)
Total hits: 2


Match Name	E-value	Identity	Description
AT3G04920.1	1.437e-60	90.98	\| Symbols: \| Ribosomal protein S24e family protei...	[more]
AT5G28060.1	2.710e-59	88.52	\| Symbols: \| Ribosomal protein S24e family protei...	[more]

InterPro

Analysis Name: InterProScan analysis for Pisum sativum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001976	Ribosomal protein S24e	PANTHER	PTHR10496	40S RIBOSOMAL PROTEIN S24	coord: 13..143 score: 2.4
IPR001976	Ribosomal protein S24e	PFAM	PF01282	Ribosomal_S24e	coord: 33..115 score: 1.1
IPR012677	Nucleotide-binding, alpha-beta plait	GENE3D	3.30.70.330	no description	coord: 15..117 score: 1.4
IPR012678	Ribosomal protein L23/L15e	SUPERFAMILY	54189	Ribosomal proteins S24e, L23 and L15e	coord: 15..117 score: 4.6
IPR018098	Ribosomal S24e conserved site	PROSITE	PS00529	RIBOSOMAL_S24E	coord: 75..97 score
None	No IPR available	SEG	seg	seg	coord: 132..146 score
None	No IPR available	SEG	seg	seg	coord: 10..24 score

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>Pisum_sativum_v1_Contig3067 ID=Pisum_sativum_v1_Contig3067; Name=Pisum_sativum_v1_Contig3067; organism=Pisum sativum; type=contig; length=632bp
TTCGAGCATCACTGCCTATTCCTTGAAGCTTGTTTACCGGCGCAGAACAA
ACCATGGCGGACAAGGCAGTCACCATCAGAACCAGGAAGTTCATGACTAA
CAGGCTTCTCTCAAGGAAGCAATTTGTCATTGATGTTCTTCATCCAGGGA
GGGCCAATGTCTCAAAGGCTGAACTCAAAGAGAAGTTGGCTAGAATCTAT
GACGTGAAGGACCCAAACACTGTTTTCGTGTTCAAGTTCAGAACTCATTT
TGGAGGAGGCAAGTCAACTGGTTTTGGTTTGATCTACGATTCTGTTGAGA
ATGCTAAGAAGTACGAGCCAAAATACAGACTTATCAGGAATGGGCTTGAT
ACTAAGGTTGAGAAGTCAAGGAAGCAAATGAAGGAGAGGAAGAACAGAGC
CAAGAAGATTCGTGGAGTAAAGAAGACCAAGGCTGGTGATGCTGCCAAGG
CTGGAAAGAAGAAATAAGTTTCAGATATTTTGTTATGATATTAAAGTTAT
TTTACTGCTGGTTTTTCTTAAGACTATTTTTATAGTCTTGTAGCTTTCTA
GAAATGAAGGATTTTGCTTTAGTTGTCTTTTGTACTTTAACATTTATGTG
TTGAGATTGAGTACCAGTGACCAATTTTGATT

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome
GO:0000166	nucleotide binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular anatomical structure
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **INTERPRO**
Term	Definition
IPR001976	Ribosomal_eS24
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR012678	Ribosomal_uL23/eL15/eS24_sf
IPR018098	Ribosomal_S24e_CS

Search form

Pisum_sativum_v1_Contig3067