Pisum_sativum_v1_Contig475

Contig Overview


Name	Pisum_sativum_v1_Contig475
Unique Name	Pisum_sativum_v1_Contig475
Type	contig
Organism	Pisum sativum (pea)
Sequence length	618

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
GH719199	EST	GH719199:43..324 +	Pisum sativum unigene v1	n/a
AM161721	EST	AM161721:40..325 +	Pisum sativum unigene v1	n/a
FG530778	EST	FG530778:1..618 -	Pisum sativum unigene v1	n/a

Unigenes

This contig is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Pisum sativum unigene v1	Pisum sativum unigene v1	contig

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Pisum sativum unigene v1	2010-12-27
Homology Analysis: Pisum sativum unigene v1 vs Trembl	2010-12-28
Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide	2011-02-03
InterProScan analysis for Pisum sativum unigene v1	2010-12-29

Relationships

The following EST feature(s) are a part of this contig:


Feature Name	Unique Name	Species	Type
GH719199	GH719199	Pisum sativum	EST
AM161721	AM161721	Pisum sativum	EST
FG530778	FG530778	Pisum sativum	EST

Homology

[Close]

BLAST of Pisum_sativum_v1_Contig475 vs. TrEMBL
Match: B7FJW2_MEDTR (Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 265.388 bits (677), Expect = 2.387e-69
Identity = 129/144 (89.58%), Postives = 134/144 (93.06%), Query Frame = -1

Query:  187 EQVKPAPVTPDGKALETSPPSPVELKIQQLTEERKELIKGSYRDKHFNAGSILLGFGVFEAVGGGLNTWLRTGKLFPGPHLFAGAGITVXXXXXXXLVPPMQKGSETARNLHIALNTLNVLLFVWQIPTGLDIVWKVFEFTNWP 618
            +Q+KPAPVTPDGKALETSP SPVEL+IQ+LTEERKELIKGSYRDKHFNAGSILLGFGVFEAVGGGLNTWLRTGKLFPGPHLFAGAGITV       LVPPMQKGSETARNLHIALNTL VLLF+WQIPTGLDIVWKVFEFT WP
Sbjct:  122 KQLKPAPVTPDGKALETSPASPVELEIQKLTEERKELIKGSYRDKHFNAGSILLGFGVFEAVGGGLNTWLRTGKLFPGPHLFAGAGITVLWALAAALVPPMQKGSETARNLHIALNTLKVLLFMWQIPTGLDIVWKVFEFTKWP 265

[Close]

BLAST of Pisum_sativum_v1_Contig475 vs. TrEMBL
Match: C6TC05_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 8.222e-62
Identity = 114/144 (79.17%), Postives = 127/144 (88.19%), Query Frame = -1

Query:  187 EQVKPAPVTPDGKALETSPPSPVELKIQQLTEERKELIKGSYRDKHFNAGSILLGFGVFEAVGGGLNTWLRTGKLFPGPHLFAGAGITVXXXXXXXLVPPMQKGSETARNLHIALNTLNVLLFVWQIPTGLDIVWKVFEFTNWP 618
            +QVKP PVTPDGK +E + PSPVEL+IQQLTEERKELIKGSY+D+HFNAGSILLGFGV E++GGG+NTW RTGKLFPGPHLFAGA ITV       LVP MQKG+ETARNLHIALN +NVLLFVWQIPTG+DIV+KVFEFT WP
Sbjct:  129 KQVKPTPVTPDGKPVEEASPSPVELQIQQLTEERKELIKGSYKDRHFNAGSILLGFGVLESIGGGVNTWFRTGKLFPGPHLFAGAAITVLWALAAALVPSMQKGNETARNLHIALNAVNVLLFVWQIPTGIDIVFKVFEFTTWP 272

[Close]

BLAST of Pisum_sativum_v1_Contig475 vs. TrEMBL
Match: B9T511_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0144260 PE=4 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 1.074e-61
Identity = 117/144 (81.25%), Postives = 127/144 (88.19%), Query Frame = -1

Query:  187 EQVKPAPVTPDGKALETSPPSPVELKIQQLTEERKELIKGSYRDKHFNAGSILLGFGVFEAVGGGLNTWLRTGKLFPGPHLFAGAGITVXXXXXXXLVPPMQKGSETARNLHIALNTLNVLLFVWQIPTGLDIVWKVFEFTNWP 618
            +QVKPA VTPDGK +E +PPSPVELKIQQLTEERKELIKGSY+D+HFNAGSILLGFGV E++GGGLNTW RTGKLFPGPHLFAGAGITV       LVP MQKG+ETARNLHIALN LNVLLF+WQIPTG +IV KVFEFT WP
Sbjct:  128 KQVKPAAVTPDGKPVE-APPSPVELKIQQLTEERKELIKGSYKDRHFNAGSILLGFGVLESIGGGLNTWFRTGKLFPGPHLFAGAGITVLWAAAAALVPAMQKGNETARNLHIALNALNVLLFIWQIPTGFEIVLKVFEFTKWP 270

[Close]

BLAST of Pisum_sativum_v1_Contig475 vs. TrEMBL
Match: B9I918_POPTR (Predicted protein (Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_245090 PE=4 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 9.091e-61
Identity = 114/143 (79.72%), Postives = 128/143 (89.51%), Query Frame = -1

Query:  187 QVKPAPVTPDGKALETSPPSPVELKIQQLTEERKELIKGSYRDKHFNAGSILLGFGVFEAVGGGLNTWLRTGKLFPGPHLFAGAGITVXXXXXXXLVPPMQKGSETARNLHIALNTLNVLLFVWQIPTGLDIVWKVFEFTNWP 615
            QVKP PVTP+G  +E +P SPVELKIQQL+EERKELIKGSYRD+HFNAGSILLGFGVFEA+GGG+NTWLRTGKLFPGPHLFAGAGITV       LVP MQKG+ETAR+LHIALN +NV+LF+WQIPTG+DIV+KVFEFT WP
Sbjct:   58 QVKPTPVTPEGTPVEAAP-SPVELKIQQLSEERKELIKGSYRDRHFNAGSILLGFGVFEAIGGGVNTWLRTGKLFPGPHLFAGAGITVLWAAAAALVPAMQKGNETARSLHIALNAINVVLFLWQIPTGIDIVFKVFEFTKWP 199

[Close]

BLAST of Pisum_sativum_v1_Contig475 vs. TrEMBL
Match: A9PH65_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 9.091e-61
Identity = 114/143 (79.72%), Postives = 128/143 (89.51%), Query Frame = -1

Query:  187 QVKPAPVTPDGKALETSPPSPVELKIQQLTEERKELIKGSYRDKHFNAGSILLGFGVFEAVGGGLNTWLRTGKLFPGPHLFAGAGITVXXXXXXXLVPPMQKGSETARNLHIALNTLNVLLFVWQIPTGLDIVWKVFEFTNWP 615
            QVKP PVTP+G  +E +P SPVELKIQQL+EERKELIKGSYRD+HFNAGSILLGFGVFEA+GGG+NTWLRTGKLFPGPHLFAGAGITV       LVP MQKG+ETAR+LHIALN +NV+LF+WQIPTG+DIV+KVFEFT WP
Sbjct:  133 QVKPTPVTPEGTPVEAAP-SPVELKIQQLSEERKELIKGSYRDRHFNAGSILLGFGVFEAIGGGVNTWLRTGKLFPGPHLFAGAGITVLWAAAAALVPAMQKGNETARSLHIALNAINVVLFLWQIPTGIDIVFKVFEFTKWP 274

[Close]

BLAST of Pisum_sativum_v1_Contig475 vs. TrEMBL
Match: D7U7Z9_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_48.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00027398001 PE=4 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 2.924e-59
Identity = 111/145 (76.55%), Postives = 124/145 (85.52%), Query Frame = -1

Query:  187 EQVKPAPVTPDGKA-LETSPPSPVELKIQQLTEERKELIKGSYRDKHFNAGSILLGFGVFEAVGGGLNTWLRTGKLFPGPHLFAGAGITVXXXXXXXLVPPMQKGSETARNLHIALNTLNVLLFVWQIPTGLDIVWKVFEFTNWP 618
            +QV+P  VTP+G    E  PPSP+E KIQQLTEERKELIKGS+RD+HFNAGSILLGFGVFE++GGG+NTW RTGKLFPGPHLFAGA IT        LVP MQKG+ETARNLHIALN LNVLLF+WQIPTG+DIV+KVFEFTNWP
Sbjct:  129 KQVRPVAVTPEGSPPAEAPPPSPIEAKIQQLTEERKELIKGSFRDRHFNAGSILLGFGVFESIGGGVNTWFRTGKLFPGPHLFAGAAITALWAAAAALVPAMQKGNETARNLHIALNGLNVLLFIWQIPTGIDIVFKVFEFTNWP 273

[Close]

BLAST of Pisum_sativum_v1_Contig475 vs. TrEMBL
Match: C6TKB0_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 3.026e-56
Identity = 109/144 (75.69%), Postives = 121/144 (84.03%), Query Frame = -1

Query:  187 EQVKPAPVTPDGKALETSPPSPVELKIQQLTEERKELIKGSYRDKHFNAGSILLGFGVFEAVGGGLNTWLRTGKLFPGPHLFAGAGITVXXXXXXXLVPPMQKGSETARNLHIALNTLNVLLFVWQIPTGLDIVWKVFEFTNWP 618
            +QVKP PVTP+    E  PPS +ELKIQQLTEERKEL+KGSY+D+H+NAGSILLGFGV EAVGGGLNTW+RTGKLFPGPHLF GA I V       LVP MQ+GSETAR+LHIALNTLNVLLFV Q+PTG DI+ KVFEFTNWP
Sbjct:  133 KQVKPTPVTPE----EVPPPSEIELKIQQLTEERKELLKGSYKDRHYNAGSILLGFGVLEAVGGGLNTWIRTGKLFPGPHLFGGAAIAVLWALSAALVPSMQRGSETARSLHIALNTLNVLLFVSQLPTGFDILLKVFEFTNWP 272

[Close]

BLAST of Pisum_sativum_v1_Contig475 vs. TrEMBL
Match: D7LSQ2_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_486691 PE=4 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 3.952e-56
Identity = 108/146 (73.97%), Postives = 124/146 (84.93%), Query Frame = -1

Query:  187 EQVKPAPVTPDGKAL--ETSPPSPVELKIQQLTEERKELIKGSYRDKHFNAGSILLGFGVFEAVGGGLNTWLRTGKLFPGPHLFAGAGITVXXXXXXXLVPPMQKGSETARNLHIALNTLNVLLFVWQIPTGLDIVWKVFEFTNWP 618
            +Q+KP PV+PDG      +SPPS  EL+IQ+LTEERKEL+KGSYRDKHF+AGS+LLGFGV EAV GG+NT+LRTGKLFPGPHL+AGAGITV       LVP MQKG+ETAR+LHIALN +NVLLF+WQIPTGLDIV KVFEFT WP
Sbjct:  126 KQLKPTPVSPDGSTAVDSSSPPSTTELQIQRLTEERKELVKGSYRDKHFDAGSVLLGFGVLEAVFGGVNTYLRTGKLFPGPHLYAGAGITVLWAAAAALVPAMQKGNETARSLHIALNAVNVLLFIWQIPTGLDIVLKVFEFTKWP 271

[Close]

BLAST of Pisum_sativum_v1_Contig475 vs. TrEMBL
Match: Q9M277_ARATH (AT3g61870/F21F14_40 OS=Arabidopsis thaliana GN=At3g61870 PE=2 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 8.805e-56
Identity = 107/146 (73.29%), Postives = 124/146 (84.93%), Query Frame = -1

Query:  187 EQVKPAPVTPDGKAL--ETSPPSPVELKIQQLTEERKELIKGSYRDKHFNAGSILLGFGVFEAVGGGLNTWLRTGKLFPGPHLFAGAGITVXXXXXXXLVPPMQKGSETARNLHIALNTLNVLLFVWQIPTGLDIVWKVFEFTNWP 618
            +Q+KP PV+PDG      +SPPS  EL+IQ+LTEERKEL+KGSYRDKHF+AGS+LLGFGV EAV GG+NT+LRTGKLFPGPHL+AGAGITV       LVP MQKG++TAR+LHIALN +NVLLF+WQIPTGLDIV KVFEFT WP
Sbjct:  127 KQLKPTPVSPDGSTAVDSSSPPSTTELQIQRLTEERKELVKGSYRDKHFDAGSVLLGFGVLEAVFGGVNTYLRTGKLFPGPHLYAGAGITVLWAAAAALVPAMQKGNDTARSLHIALNAVNVLLFIWQIPTGLDIVLKVFEFTKWP 272

[Close]

BLAST of Pisum_sativum_v1_Contig475 vs. TrEMBL
Match: A9NZT2_PICSI (Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 7.714e-52
Identity = 100/144 (69.44%), Postives = 115/144 (79.86%), Query Frame = -1

Query:  187 EQVKPAPVTPDGKALETSPPSPVELKIQQLTEERKELIKGSYRDKHFNAGSILLGFGVFEAVGGGLNTWLRTGKLFPGPHLFAGAGITVXXXXXXXLVPPMQKGSETARNLHIALNTLNVLLFVWQIPTGLDIVWKVFEFTNWP 618
            +QVKP P          +PPSP+E KIQQLTEERK L+KGS+RD+H+NAGSILLGFGVFEA+GGG NTW+R GKLFPGPHLFAGAGIT+       LVP MQKG+  ARNLHIALN +NVLLF+WQIPTG++IV KV EFT WP
Sbjct:  187 KQVKPQPKKEGDPP---APPSPIETKIQQLTEERKGLLKGSFRDRHYNAGSILLGFGVFEALGGGFNTWVRAGKLFPGPHLFAGAGITILWALAAALVPAMQKGNGVARNLHIALNAVNVLLFIWQIPTGIEIVLKVLEFTTWP 327

[Close]

BLAST of Pisum_sativum_v1_Contig475 vs. TAIR peptide
Match: AT3G61870.1 (| Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast inner membrane, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 200 Blast hits to 200 proteins in 73 species: Archae - 0; Bacteria - 112; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink). | chr3:22902702-22903895 FORWARD LENGTH=272)

HSP 1 Score: 220.32 bits (560), Expect = 6.442e-58
Identity = 107/146 (73.29%), Postives = 124/146 (84.93%), Query Frame = -1

Query:  187 EQVKPAPVTPDGKAL--ETSPPSPVELKIQQLTEERKELIKGSYRDKHFNAGSILLGFGVFEAVGGGLNTWLRTGKLFPGPHLFAGAGITVXXXXXXXLVPPMQKGSETARNLHIALNTLNVLLFVWQIPTGLDIVWKVFEFTNWP 618
            +Q+KP PV+PDG      +SPPS  EL+IQ+LTEERKEL+KGSYRDKHF+AGS+LLGFGV EAV GG+NT+LRTGKLFPGPHL+AGAGITV       LVP MQKG++TAR+LHIALN +NVLLF+WQIPTGLDIV KVFEFT WP
Sbjct:  127 KQLKPTPVSPDGSTAVDSSSPPSTTELQIQRLTEERKELVKGSYRDKHFDAGSVLLGFGVLEAVFGGVNTYLRTGKLFPGPHLYAGAGITVLWAAAAALVPAMQKGNDTARSLHIALNAVNVLLFIWQIPTGLDIVLKVFEFTKWP 272

[Close]

BLAST of Pisum_sativum_v1_Contig475 vs. TAIR peptide
Match: AT3G61870.2 (| Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast inner membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr3:22902702-22903561 FORWARD LENGTH=254)

HSP 1 Score: 137.502 bits (345), Expect = 5.491e-33
Identity = 65/88 (73.86%), Postives = 77/88 (87.50%), Query Frame = -1

Query:  361 EQVKPAPVTPDGKAL--ETSPPSPVELKIQQLTEERKELIKGSYRDKHFNAGSILLGFGVFEAVGGGLNTWLRTGKLFPGPHLFAGAG 618
            +Q+KP PV+PDG      +SPPS  EL+IQ+LTEERKEL+KGSYRDKHF+AGS+LLGFGV EAV GG+NT+LRTGKLFPGPHL+AGAG
Sbjct:  127 KQLKPTPVSPDGSTAVDSSSPPSTTELQIQRLTEERKELVKGSYRDKHFDAGSVLLGFGVLEAVFGGVNTYLRTGKLFPGPHLYAGAG 214

The following BLAST results are available for this feature:

BLAST of Pisum_sativum_v1_Contig475 vs. TrEMBL
BLAST of Pisum_sativum_v1_Contig475 vs. TAIR peptide

BLAST of Pisum_sativum_v1_Contig475 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
B7FJW2_MEDTR	2.387e-69	89.58	Putative uncharacterized protein OS=Medicago trunc...	[more]
C6TC05_SOYBN	8.222e-62	79.17	Putative uncharacterized protein OS=Glycine max PE...	[more]
B9T511_RICCO	1.074e-61	81.25	Putative uncharacterized protein OS=Ricinus commun...	[more]
B9I918_POPTR	9.091e-61	79.72	Predicted protein (Fragment) OS=Populus trichocarp...	[more]
A9PH65_POPTR	9.091e-61	79.72	Putative uncharacterized protein OS=Populus tricho...	[more]
D7U7Z9_VITVI	2.924e-59	76.55	Whole genome shotgun sequence of line PN40024, sca...	[more]
C6TKB0_SOYBN	3.026e-56	75.69	Putative uncharacterized protein OS=Glycine max PE...	[more]
D7LSQ2_ARALY	3.952e-56	73.97	Putative uncharacterized protein OS=Arabidopsis ly...	[more]
Q9M277_ARATH	8.805e-56	73.29	AT3g61870/F21F14_40 OS=Arabidopsis thaliana GN=At3...	[more]
A9NZT2_PICSI	7.714e-52	69.44	Putative uncharacterized protein OS=Picea sitchens...	[more]

BLAST of Pisum_sativum_v1_Contig475 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide)
Total hits: 2


Match Name	E-value	Identity	Description
AT3G61870.1	6.442e-58	73.29	\| Symbols: \| unknown protein; FUNCTIONS IN: molec...	[more]
AT3G61870.2	5.491e-33	73.86	\| Symbols: \| unknown protein; FUNCTIONS IN: molec...	[more]

InterPro

Analysis Name: InterProScan analysis for Pisum sativum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SEG	seg	seg	coord: 90..97 score
None	No IPR available	SEG	seg	seg	coord: 13..31 score

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>Pisum_sativum_v1_Contig475 ID=Pisum_sativum_v1_Contig475; Name=Pisum_sativum_v1_Contig475; organism=Pisum sativum; type=contig; length=618bp
ATATGTATACTACATTATACAAAAGAATGGTGTAATAGTACAGTTATGCA
ATACTTACCGACACAATAATGTTACAAGGCCAAAGAAAAATGCAGAATGC
CAAACTTTGCACTTATTGATGTTGCGAGAATACTAATTTGAAAGCAAAAT
ACCTGAGAACTGTTAAACATGAGAATCTTACATTCAAGGCCAATTTGTGA
ACTCAAACACTTTCCATACAATATCAAGTCCAGTGGGAATCTGCCATACG
AAAAGAAGAACATTCAACGTATTCAGCGCGATGTGAAGATTTCTCGCTGT
TTCACTCCCTTTCTGCATGGGTGGTACTAGCGCTGCAGCCAGTGCCCATA
AGACCGTAATACCTGCTCCTGCGAATAAATGTGGACCGGGAAATAACTTT
CCTGTCCTTAACCATGTGTTGAGTCCTCCACCAACAGCCTCAAAGACACC
AAATCCTAGAAGTATGGATCCTGCATTGAAGTGTTTATCCCTATATGAAC
CTTTGATAAGCTCTTTCCTCTCCTCAGTAAGTTGCTGGATTTTGAGTTCA
ACAGGTGATGGTGGTGAAGTTTCCAGTGCTTTACCATCTGGGGTGACTGG
AGCAGGCTTGACTTGTTC

Search form

Pisum_sativum_v1_Contig475