Pisum_sativum_v1_Contig568

Contig Overview


Name	Pisum_sativum_v1_Contig568
Unique Name	Pisum_sativum_v1_Contig568
Type	contig
Organism	Pisum sativum (pea)
Sequence length	616

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
FG535033	EST	FG535033:46..410 +	Pisum sativum unigene v1	n/a
FG535080	EST	FG535080:1..514 +	Pisum sativum unigene v1	n/a
FG532641	EST	FG532641:46..494 +	Pisum sativum unigene v1	n/a
FG535031	EST	FG535031:46..547 +	Pisum sativum unigene v1	n/a
FG530024	EST	FG530024:1..616 +	Pisum sativum unigene v1	n/a

Unigenes

This contig is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Pisum sativum unigene v2	Pisum sativum unigene v2	contig
Pisum sativum unigene v1	Pisum sativum unigene v1	contig

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Pisum sativum unigene v1	2010-12-27
Homology Analysis: Pisum sativum unigene v1 vs Trembl	2010-12-28
Homology Analysis: Pisum sativum unigene v1 vs Swissprot	2010-12-28
Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide	2011-02-03
Pisum sativum unigene v2	2011-03-01
Homology Analysis: Pisum sativum unigene v2 vs TAIR 10 peptide	2011-04-21
Homology Analysis: Pisum sativum unigene v2 vs Trembl	2011-04-27
Homology Analysis: Pisum sativum unigene v2 vs Soybean peptides	2011-04-21
Homology Analysis: Pisum sativum unigene v2 vs Swissprot	2011-04-21
Homology Analysis: Pisum sativum unigene v2 vs Medicago proteins	2011-04-21

Relationships

The following EST feature(s) are a part of this contig:


Feature Name	Unique Name	Species	Type
FG535033	FG535033	Pisum sativum	EST
FG535080	FG535080	Pisum sativum	EST
FG532641	FG532641	Pisum sativum	EST
FG535031	FG535031	Pisum sativum	EST
FG530024	FG530024	Pisum sativum	EST

Homology

[Close]

BLAST of Pisum_sativum_v1_Contig568 vs. SwissProt
Match: RH18_ORYSJ (DEAD-box ATP-dependent RNA helicase 18 OS=Oryza sativa subsp. japonica GN=Os01g0164500 PE=1 SV=2)

HSP 1 Score: 59.3066 bits (142), Expect = 1.813e-8
Identity = 29/38 (76.32%), Postives = 31/38 (81.58%), Query Frame = 2

Query:    2 RHAQQTVEDDEELTQEYRLLKKLKKGVIDEDEYAKLTG 115
            R A QT ED +EL  EYRLLKKLK+GVIDEDEY KLTG
Sbjct:  556 RQAVQTKEDMDELANEYRLLKKLKRGVIDEDEYEKLTG 593

[Close]

BLAST of Pisum_sativum_v1_Contig568 vs. TrEMBL
Match: B9S466_RICCO (Dead box ATP-dependent RNA helicase, putative OS=Ricinus communis GN=RCOM_0687340 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.991e-11
Identity = 34/43 (79.07%), Postives = 39/43 (90.70%), Query Frame = 2

Query:    2 RHAQQTVEDDEELTQEYRLLKKLKKGVIDEDEYAKLTGTEDLL 130
            R A QTVED++EL++EYRLLKKLKKG IDE E+AKLTGTEDLL
Sbjct:  550 RRAAQTVEDEDELSREYRLLKKLKKGTIDESEFAKLTGTEDLL 592

[Close]

BLAST of Pisum_sativum_v1_Contig568 vs. TrEMBL
Match: B9HHV1_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_803335 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.206e-10
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 2

Query:    2 RHAQQTVEDDEELTQEYRLLKKLKKGVIDEDEYAKLTGTEDLL 130
            R A QTVED+EEL +EYRLLKKLKKG IDE E+ KLTGT++LL
Sbjct:  550 RRAAQTVEDEEELAREYRLLKKLKKGTIDESEFEKLTGTDELL 592

[Close]

BLAST of Pisum_sativum_v1_Contig568 vs. TrEMBL
Match: B8ADF1_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_00527 PE=3 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 6.745e-8
Identity = 30/38 (78.95%), Postives = 32/38 (84.21%), Query Frame = 2

Query:    2 RHAQQTVEDDEELTQEYRLLKKLKKGVIDEDEYAKLTG 115
            R A QT ED +ELT EYRLLKKLK+GVIDEDEY KLTG
Sbjct:  557 RQAVQTKEDMDELTNEYRLLKKLKRGVIDEDEYEKLTG 594

[Close]

BLAST of Pisum_sativum_v1_Contig568 vs. TrEMBL
Match: A2WL22_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_00534 PE=4 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 6.745e-8
Identity = 30/38 (78.95%), Postives = 32/38 (84.21%), Query Frame = 2

Query:    2 RHAQQTVEDDEELTQEYRLLKKLKKGVIDEDEYAKLTG 115
            R A QT ED +ELT EYRLLKKLK+GVIDEDEY KLTG
Sbjct:   52 RQAVQTKEDMDELTNEYRLLKKLKRGVIDEDEYEKLTG 89

[Close]

BLAST of Pisum_sativum_v1_Contig568 vs. TrEMBL
Match: B7EFB7_ORYSJ (cDNA clone:J013162N07, full insert sequence OS=Oryza sativa subsp. japonica PE=2 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 2.563e-7
Identity = 29/38 (76.32%), Postives = 31/38 (81.58%), Query Frame = 2

Query:    2 RHAQQTVEDDEELTQEYRLLKKLKKGVIDEDEYAKLTG 115
            R A QT ED +EL  EYRLLKKLK+GVIDEDEY KLTG
Sbjct:  556 RQAVQTKEDMDELANEYRLLKKLKRGVIDEDEYEKLTG 593

[Close]

BLAST of Pisum_sativum_v1_Contig568 vs. TAIR peptide
Match: AT5G05450.1 (| Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr5:1612077-1615195 FORWARD LENGTH=593)

HSP 1 Score: 50.8322 bits (120), Expect = 6.698e-7
Identity = 22/42 (52.38%), Postives = 32/42 (76.19%), Query Frame = 2

Query:    2 RHAQQTVEDDEELTQEYRLLKKLKKGVIDEDEYAKLTGTEDL 127
            R   QT ED+E + ++Y+L+ K+KKG+I EDEY +LTG +DL
Sbjct:  551 RQTIQTAEDEEVMDRDYKLMIKVKKGLIKEDEYERLTGDDDL 592

[Close]

Query:    2 RHAQQTVEDDEELTQEYRLLKKLKKGVIDEDEYAKLTGTEDL 127
            R   QT ED+E + ++Y+L+ K+KKG+I EDEY +LTG +DL
Sbjct:  551 RQTIQTAEDEEVMDRDYKLMIKVKKGLIKEDEYERLTGDDDL 592

[Close]

BLAST of Pisum_sativum_v1_Contig568 vs. TrEMBL
Match: B9S466_RICCO (Dead box ATP-dependent RNA helicase, putative OS=Ricinus communis GN=RCOM_0687340 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.124e-11
Identity = 34/43 (79.07%), Postives = 39/43 (90.70%), Query Frame = 2

Query:    2 RHAQQTVEDDEELTQEYRLLKKLKKGVIDEDEYAKLTGTEDLL 130
            R A QTVED++EL++EYRLLKKLKKG IDE E+AKLTGTEDLL
Sbjct:  550 RRAAQTVEDEDELSREYRLLKKLKKGTIDESEFAKLTGTEDLL 592

[Close]

BLAST of Pisum_sativum_v1_Contig568 vs. TrEMBL
Match: B9HHV1_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_803335 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.843e-10
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 2

Query:    2 RHAQQTVEDDEELTQEYRLLKKLKKGVIDEDEYAKLTGTEDLL 130
            R A QTVED+EEL +EYRLLKKLKKG IDE E+ KLTGT++LL
Sbjct:  550 RRAAQTVEDEEELAREYRLLKKLKKGTIDESEFEKLTGTDELL 592

[Close]

BLAST of Pisum_sativum_v1_Contig568 vs. TrEMBL
Match: B8ADF1_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_00527 PE=3 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 8.277e-8
Identity = 30/38 (78.95%), Postives = 32/38 (84.21%), Query Frame = 2

Query:    2 RHAQQTVEDDEELTQEYRLLKKLKKGVIDEDEYAKLTG 115
            R A QT ED +ELT EYRLLKKLK+GVIDEDEY KLTG
Sbjct:  557 RQAVQTKEDMDELTNEYRLLKKLKRGVIDEDEYEKLTG 594

[Close]

BLAST of Pisum_sativum_v1_Contig568 vs. TrEMBL
Match: A2WL22_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_00534 PE=4 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 8.277e-8
Identity = 30/38 (78.95%), Postives = 32/38 (84.21%), Query Frame = 2

Query:    2 RHAQQTVEDDEELTQEYRLLKKLKKGVIDEDEYAKLTG 115
            R A QT ED +ELT EYRLLKKLK+GVIDEDEY KLTG
Sbjct:   52 RQAVQTKEDMDELTNEYRLLKKLKRGVIDEDEYEKLTG 89

[Close]

BLAST of Pisum_sativum_v1_Contig568 vs. TrEMBL
Match: B7EFB7_ORYSJ (cDNA clone:J013162N07, full insert sequence OS=Oryza sativa subsp. japonica PE=2 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 3.145e-7
Identity = 29/38 (76.32%), Postives = 31/38 (81.58%), Query Frame = 2

Query:    2 RHAQQTVEDDEELTQEYRLLKKLKKGVIDEDEYAKLTG 115
            R A QT ED +EL  EYRLLKKLK+GVIDEDEY KLTG
Sbjct:  556 RQAVQTKEDMDELANEYRLLKKLKRGVIDEDEYEKLTG 593

[Close]

BLAST of Pisum_sativum_v1_Contig568 vs. Soybean peptides
Match: Glyma11g35640.1|PACid:16285499 ()

HSP 1 Score: 75.0998 bits (183), Expect = 5.000e-14
Identity = 36/43 (83.72%), Postives = 40/43 (93.02%), Query Frame = 2

Query:    2 RHAQQTVEDDEELTQEYRLLKKLKKGVIDEDEYAKLTGTEDLL 130
            R AQQT+ED+EEL QEYRLLKKLKKG IDE+EYAKLTGTE+LL
Sbjct:  547 RRAQQTMEDEEELMQEYRLLKKLKKGTIDENEYAKLTGTEELL 589

[Close]

BLAST of Pisum_sativum_v1_Contig568 vs. Soybean peptides
Match: Glyma18g02760.1|PACid:16307730 ()

HSP 1 Score: 73.1738 bits (178), Expect = 1.900e-13
Identity = 35/43 (81.40%), Postives = 39/43 (90.70%), Query Frame = 2

Query:    2 RHAQQTVEDDEELTQEYRLLKKLKKGVIDEDEYAKLTGTEDLL 130
            R AQQT+ED+EEL  EYRLLKKLKKG IDE+EYAKLTGTE+LL
Sbjct:  547 RRAQQTMEDEEELMHEYRLLKKLKKGTIDENEYAKLTGTEELL 589

[Close]

BLAST of Pisum_sativum_v1_Contig568 vs. SwissProt
Match: RH18_ORYSJ (DEAD-box ATP-dependent RNA helicase 18 OS=Oryza sativa subsp. japonica GN=Os01g0164500 PE=1 SV=2)

HSP 1 Score: 59.3066 bits (142), Expect = 1.846e-8
Identity = 29/38 (76.32%), Postives = 31/38 (81.58%), Query Frame = 2

Query:    2 RHAQQTVEDDEELTQEYRLLKKLKKGVIDEDEYAKLTG 115
            R A QT ED +EL  EYRLLKKLK+GVIDEDEY KLTG
Sbjct:  556 RQAVQTKEDMDELANEYRLLKKLKRGVIDEDEYEKLTG 593

[Close]

BLAST of Pisum_sativum_v1_Contig568 vs. Medicago proteins
Match: IMGA|Medtr3g071620.1 (DEAD-box ATP-dependent RNA helicase 18 (AHRD V1 **** Q9FLB0); contains Interpro domain(s) IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal chr03_pseudomolecule_IMGAG_V3.5 22846412-22840857 E EGN_Mt100125 20100825)

HSP 1 Score: 80.4925 bits (197), Expect = 6.847e-16
Identity = 49/96 (51.04%), Postives = 57/96 (59.38%), Query Frame = 2

Query:    2 RHAQQTVEDDEELTQEYRLLKKLKKGVIDEDEYAKLTGTEDLL*KQSLHV*LHYHEHRCWYCNECRTG*MFLR*PMVLLWAYSKRSDIYTSFHGDG 289
            R A+QTVED+EELTQEYRLLKKLKKG IDEDEYAKLT  +                   W           L+ P +LL+A SKRSD+YTS  G+G
Sbjct:  570 RRAKQTVEDEEELTQEYRLLKKLKKGTIDEDEYAKLTDNQ-------------------WT--------SILQHPHMLLFASSKRSDMYTSLTGNG 638

The following BLAST results are available for this feature:

BLAST of Pisum_sativum_v1_Contig568 vs. SwissProt
BLAST of Pisum_sativum_v1_Contig568 vs. TrEMBL
BLAST of Pisum_sativum_v1_Contig568 vs. TAIR peptide
BLAST of Pisum_sativum_v1_Contig568 vs. TAIR peptide
BLAST of Pisum_sativum_v1_Contig568 vs. TrEMBL
BLAST of Pisum_sativum_v1_Contig568 vs. Soybean peptides
BLAST of Pisum_sativum_v1_Contig568 vs. SwissProt
BLAST of Pisum_sativum_v1_Contig568 vs. Medicago proteins

BLAST of Pisum_sativum_v1_Contig568 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Swissprot)
Total hits: 1


Match Name	E-value	Identity	Description
RH18_ORYSJ	1.813e-8	76.32	DEAD-box ATP-dependent RNA helicase 18 OS=Oryza sa...	[more]

BLAST of Pisum_sativum_v1_Contig568 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl)
Total hits: 5


Match Name	E-value	Identity	Description
B9S466_RICCO	4.991e-11	79.07	Dead box ATP-dependent RNA helicase, putative OS=R...	[more]
B9HHV1_POPTR	7.206e-10	74.42	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
B8ADF1_ORYSI	6.745e-8	78.95	Putative uncharacterized protein OS=Oryza sativa s...	[more]
A2WL22_ORYSI	6.745e-8	78.95	Putative uncharacterized protein OS=Oryza sativa s...	[more]
B7EFB7_ORYSJ	2.563e-7	76.32	cDNA clone:J013162N07, full insert sequence OS=Ory...	[more]

BLAST of Pisum_sativum_v1_Contig568 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide)
Total hits: 1


Match Name	E-value	Identity	Description
AT5G05450.1	6.698e-7	52.38	\| Symbols: \| P-loop containing nucleoside triphos...	[more]

BLAST of Pisum_sativum_v1_Contig568 vs. TAIR peptide
Analysis Date: 2011-04-21 (Homology Analysis: Pisum sativum unigene v2 vs TAIR 10 peptide)
Total hits: 1


Match Name	E-value	Identity	Description
AT5G05450.1	6.698e-7	52.38	\| Symbols: \| P-loop containing nucleoside triphos...	[more]

BLAST of Pisum_sativum_v1_Contig568 vs. TrEMBL
Analysis Date: 2011-04-27 (Homology Analysis: Pisum sativum unigene v2 vs Trembl)
Total hits: 5


Match Name	E-value	Identity	Description
B9S466_RICCO	6.124e-11	79.07	Dead box ATP-dependent RNA helicase, putative OS=R...	[more]
B9HHV1_POPTR	8.843e-10	74.42	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
B8ADF1_ORYSI	8.277e-8	78.95	Putative uncharacterized protein OS=Oryza sativa s...	[more]
A2WL22_ORYSI	8.277e-8	78.95	Putative uncharacterized protein OS=Oryza sativa s...	[more]
B7EFB7_ORYSJ	3.145e-7	76.32	cDNA clone:J013162N07, full insert sequence OS=Ory...	[more]

BLAST of Pisum_sativum_v1_Contig568 vs. Soybean peptides
Analysis Date: 2011-04-21 (Homology Analysis: Pisum sativum unigene v2 vs Soybean peptides)
Total hits: 2


Match Name	E-value	Identity	Description
Glyma11g35640.1\|PACid:16285499	5.000e-14	83.72		[more]
Glyma18g02760.1\|PACid:16307730	1.900e-13	81.40		[more]

BLAST of Pisum_sativum_v1_Contig568 vs. SwissProt
Analysis Date: 2011-04-21 (Homology Analysis: Pisum sativum unigene v2 vs Swissprot)
Total hits: 1


Match Name	E-value	Identity	Description
RH18_ORYSJ	1.846e-8	76.32	DEAD-box ATP-dependent RNA helicase 18 OS=Oryza sa...	[more]

BLAST of Pisum_sativum_v1_Contig568 vs. Medicago proteins
Analysis Date: 2011-04-21 (Homology Analysis: Pisum sativum unigene v2 vs Medicago proteins)
Total hits: 1


Match Name	E-value	Identity	Description
IMGA\|Medtr3g071620.1	6.847e-16	51.04	DEAD-box ATP-dependent RNA helicase 18 (AHRD V1 **...	[more]

Properties


Property Name	Value
Singlet in analysis	Pisum sativum unigene v2

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>Pisum_sativum_v1_Contig568 ID=Pisum_sativum_v1_Contig568; Name=Pisum_sativum_v1_Contig568; organism=Pisum sativum; type=contig; length=616bp
AAGACATGCTCAGCAGACTGTTGAAGACGATGAGGAGTTGACGCAAGAAT
ACCGCTTGTTGAAGAAATTGAAGAAAGGGGTCATAGATGAGGATGAATAT
GCCAAATTGACAGGCACAGAAGACTTACTTTGAAAGCAAAGTTTACATGT
CTGATTACACTACCATGAACATCGCTGTTGGTATTGTAATGAGTGCAGAA
CTGGTTGAATGTTCTTAAGATAACCAATGGTTCTTCTCTGGGCATACTCT
AAAAGATCTGACATATATACATCTTTCCATGGTGATGGACCTCAGAGTTC
AGTGGACCGATAGAGACCTTATCACCCATAGATGGGCTGAATGACATTTA
TGGATTAATGTACATAGAAAGTGTCGATGGTGCGGAGATTTGGAAAGGGT
ACCCTTGATTAGAGAAATAGTCTTTTAAGTTTATGAACCTCATGAAGATT
GACTTCATCCAGAATTTTGTAGTATTTTTAATGTTCTTCACTTATTAATT
TTTCATGTGCCGTTGTTTAGTCTGATAGCATAGAAGTTAACTTATGTTCT
AGGTATTTGTAACATTAATAAACAAACTCATACTTAACATTATGTATTGA
ATTTAACTTTGCTAGT

Search form

Pisum_sativum_v1_Contig568