Pisum_sativum_v1_Contig616

Contig Overview


Name	Pisum_sativum_v1_Contig616
Unique Name	Pisum_sativum_v1_Contig616
Type	contig
Organism	Pisum sativum (pea)
Sequence length	548

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
EX569246	EST	EX569246:86..440 +	Pisum sativum unigene v1	n/a
FG534779	EST	FG534779:1..537 +	Pisum sativum unigene v1	n/a
CD858647	EST	CD858647:139..548 -	Pisum sativum unigene v1	n/a

Unigenes

This contig is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Pisum sativum unigene v1	Pisum sativum unigene v1	contig

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Pisum sativum unigene v1	2010-12-27
KEGG analysis for Pisum sativum unigene v1	2011-01-05
Homology Analysis: Pisum sativum unigene v1 vs Trembl	2010-12-28
Homology Analysis: Pisum sativum unigene v1 vs Swissprot	2010-12-28
Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide	2011-02-03
InterProScan analysis for Pisum sativum unigene v1	2010-12-29

Relationships

The following EST feature(s) are a part of this contig:


Feature Name	Unique Name	Species	Type
EX569246	EX569246	Pisum sativum	EST
FG534779	FG534779	Pisum sativum	EST
CD858647	CD858647	Pisum sativum	EST

Homology

[Close]

BLAST of Pisum_sativum_v1_Contig616 vs. SwissProt
Match: RPB11_ARATH (DNA-directed RNA polymerase II subunit RPB11 OS=Arabidopsis thaliana GN=RPB13.6 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 9.090e-40
Identity = 77/93 (82.80%), Postives = 87/93 (93.55%), Query Frame = 2

Query:    2 DTKIINAASFTIEREDHTIGNILRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGFEAELLKFSKDY 280
            DTKIINAASFT+EREDHTIGNI+RMQLH+D NVLFAGY+LPHPL+YKII+RIHTTSQSSPMQAYNQ+INDLDKELD LK+ FEAE+ KFS  +
Sbjct:   24 DTKIINAASFTVEREDHTIGNIVRMQLHRDENVLFAGYQLPHPLKYKIIVRIHTTSQSSPMQAYNQAINDLDKELDYLKNQFEAEVAKFSNQF 116

[Close]

BLAST of Pisum_sativum_v1_Contig616 vs. SwissProt
Match: RPB1B_HUMAN (DNA-directed RNA polymerase II subunit RPB11-b1 OS=Homo sapiens GN=POLR2J2 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.722e-22
Identity = 50/87 (57.47%), Postives = 63/87 (72.41%), Query Frame = 2

Query:    2 DTKIINAASFTIEREDHTIGNILRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGFEAELL 262
            DTK+ NA  FTI +EDHT+GNI++ QL KDP VLFAGYK+PHPL++KIIIR+ TT   SP +A+  +I DL  EL  L+  F   LL
Sbjct:   23 DTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRTCLL 109

[Close]

BLAST of Pisum_sativum_v1_Contig616 vs. SwissProt
Match: RPB11_DROME (DNA-directed RNA polymerase II subunit RPB11 OS=Drosophila melanogaster GN=Rpb11 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.938e-22
Identity = 48/83 (57.83%), Postives = 63/83 (75.90%), Query Frame = 2

Query:    2 DTKIINAASFTIEREDHTIGNILRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGFE 250
            DTK+ NAA FTI +EDHT+GN++R QL KDPNVLFAGYK+PHPL++K +IRI TT+  SP +A+  +I DL  EL   +  F+
Sbjct:   24 DTKVTNAAIFTINKEDHTLGNMIRNQLLKDPNVLFAGYKVPHPLEHKFVIRIQTTADYSPQEAFMNAITDLLAELSLFEERFK 106

[Close]

BLAST of Pisum_sativum_v1_Contig616 vs. SwissProt
Match: RPB1C_HUMAN (DNA-directed RNA polymerase II subunit RPB11-b2 OS=Homo sapiens GN=POLR2J3 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 3.837e-22
Identity = 49/87 (56.32%), Postives = 63/87 (72.41%), Query Frame = 2

Query:    2 DTKIINAASFTIEREDHTIGNILRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGFEAELL 262
            DTK+ NA  FT+ +EDHT+GNI++ QL KDP VLFAGYK+PHPL++KIIIR+ TT   SP +A+  +I DL  EL  L+  F   LL
Sbjct:   23 DTKVPNACLFTMNKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRTCLL 109

[Close]

BLAST of Pisum_sativum_v1_Contig616 vs. SwissProt
Match: RPB11_MOUSE (DNA-directed RNA polymerase II subunit RPB11 OS=Mus musculus GN=Polr2j PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 3.837e-22
Identity = 48/86 (55.81%), Postives = 62/86 (72.09%), Query Frame = 2

Query:    2 DTKIINAASFTIEREDHTIGNILRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGFEAEL 259
            DTK+ NA  FTI +EDHT+GNI++ QL KDP VLFAGYK+PHPL++KIIIR+ TT   SP +A+  +I DL  EL  L+  F   +
Sbjct:   24 DTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRGAI 109

[Close]

BLAST of Pisum_sativum_v1_Contig616 vs. SwissProt
Match: RPB11_HUMAN (DNA-directed RNA polymerase II subunit RPB11-a OS=Homo sapiens GN=POLR2J PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 3.837e-22
Identity = 48/86 (55.81%), Postives = 62/86 (72.09%), Query Frame = 2

Query:    2 DTKIINAASFTIEREDHTIGNILRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGFEAEL 259
            DTK+ NA  FTI +EDHT+GNI++ QL KDP VLFAGYK+PHPL++KIIIR+ TT   SP +A+  +I DL  EL  L+  F   +
Sbjct:   24 DTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAI 109

[Close]

BLAST of Pisum_sativum_v1_Contig616 vs. SwissProt
Match: RPB11_BOVIN (DNA-directed RNA polymerase II subunit RPB11 OS=Bos taurus GN=POLR2J PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 3.837e-22
Identity = 48/86 (55.81%), Postives = 62/86 (72.09%), Query Frame = 2

Query:    2 DTKIINAASFTIEREDHTIGNILRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGFEAEL 259
            DTK+ NA  FTI +EDHT+GNI++ QL KDP VLFAGYK+PHPL++KIIIR+ TT   SP +A+  +I DL  EL  L+  F   +
Sbjct:   24 DTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAI 109

[Close]

BLAST of Pisum_sativum_v1_Contig616 vs. SwissProt
Match: RPB11_ANOGA (DNA-directed RNA polymerase II subunit RPB11 OS=Anopheles gambiae GN=Rpb11 PE=3 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 5.011e-22
Identity = 50/92 (54.35%), Postives = 67/92 (72.83%), Query Frame = 2

Query:    2 DTKIINAASFTIEREDHTIGNILRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGFEAELLKFSKD 277
            D K+ NAA FT+ +EDHT+GN++R QL KDPNVLFAGYKLPHPL++K ++RI TTS+ SP +A+  +I DL  EL   +  F  E +K  K+
Sbjct:   24 DMKVPNAAIFTVNKEDHTLGNMIRNQLLKDPNVLFAGYKLPHPLEHKFVLRIQTTSEYSPHEAFMNAITDLLSELSLFEERFR-EAMKEKKE 114

[Close]

BLAST of Pisum_sativum_v1_Contig616 vs. SwissProt
Match: RPB11_CAEEL (Probable DNA-directed RNA polymerase II subunit RPB11 OS=Caenorhabditis elegans GN=W01G7.3 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 5.540e-21
Identity = 48/88 (54.55%), Postives = 65/88 (73.86%), Query Frame = 2

Query:    2 DTKIINAASFTIEREDHTIGNILRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGFEAELLK 265
            DTK+ NAA FTI +EDHT+GN+L++QL KDP VLFAGYK PHPL++KI++RI TT+ ++P  A   +I DL  EL  L+   +A + K
Sbjct:   23 DTKVPNAAIFTIMKEDHTLGNMLKIQLLKDPEVLFAGYKNPHPLEHKILLRIQTTNNTTPADALTTAITDLVGELSLLEHRIDAAIKK 110

[Close]

BLAST of Pisum_sativum_v1_Contig616 vs. SwissProt
Match: RPB11_CAEBR (Probable DNA-directed RNA polymerase II subunit RPB11 OS=Caenorhabditis briggsae GN=CBG20834 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.234e-20
Identity = 46/88 (52.27%), Postives = 65/88 (73.86%), Query Frame = 2

Query:    2 DTKIINAASFTIEREDHTIGNILRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGFEAELLK 265
            DTK+ NAA FTI +EDHT+GN+L++QL KDP VLFAGYK PHPL++KI++R+ TT+ ++P  A   +I DL  EL  L+   ++ + K
Sbjct:   23 DTKVPNAAIFTINKEDHTLGNMLKIQLLKDPEVLFAGYKNPHPLEHKILLRVQTTNATTPADALTTAITDLVGELSLLEHRIDSAIKK 110

[Close]

BLAST of Pisum_sativum_v1_Contig616 vs. TrEMBL
Match: B7FGH5_MEDTR (Putative uncharacterized protein OS=Medicago truncatula PE=4 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.590e-46
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 2

Query:    2 DTKIINAASFTIEREDHTIGNILRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGFEAELLKFSKDY 280
            DTKIINAASFTIEREDHTIGNILRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGFEAELLKFSKDY
Sbjct:   24 DTKIINAASFTIEREDHTIGNILRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGFEAELLKFSKDY 116

[Close]

BLAST of Pisum_sativum_v1_Contig616 vs. TrEMBL
Match: C6SW39_SOYBN (Putative uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 4.786e-43
Identity = 84/93 (90.32%), Postives = 91/93 (97.85%), Query Frame = 2

Query:    2 DTKIINAASFTIEREDHTIGNILRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGFEAELLKFSKDY 280
            DTKIINAASFTIERE+HTIGNILRMQLH+DPNVLFAGYKLPHPLQYKII+RIHTTSQSSPMQAYNQS+NDLD+ELD LKS FEAE+LKFS+DY
Sbjct:   24 DTKIINAASFTIEREEHTIGNILRMQLHRDPNVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQSVNDLDRELDHLKSAFEAEMLKFSRDY 116

[Close]

BLAST of Pisum_sativum_v1_Contig616 vs. TrEMBL
Match: D7SV69_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_8.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00036004001 PE=4 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 2.904e-40
Identity = 81/93 (87.10%), Postives = 87/93 (93.55%), Query Frame = 2

Query:    2 DTKIINAASFTIEREDHTIGNILRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGFEAELLKFSKDY 280
            DTKIINAASFT+EREDHTIGNILRMQLH+D NVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQ+INDLDKELD LK+ FE EL K S++Y
Sbjct:   24 DTKIINAASFTVEREDHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQAINDLDKELDYLKNAFEVELAKHSREY 116

[Close]

BLAST of Pisum_sativum_v1_Contig616 vs. TrEMBL
Match: A5BQX0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_015574 PE=4 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 2.904e-40
Identity = 81/93 (87.10%), Postives = 87/93 (93.55%), Query Frame = 2

Query:    2 DTKIINAASFTIEREDHTIGNILRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGFEAELLKFSKDY 280
            DTKIINAASFT+EREDHTIGNILRMQLH+D NVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQ+INDLDKELD LK+ FE EL K S++Y
Sbjct:   37 DTKIINAASFTVEREDHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQAINDLDKELDYLKNAFEVELAKHSREY 129

[Close]

BLAST of Pisum_sativum_v1_Contig616 vs. TrEMBL
Match: D7LU23_ARALY (ATRPB13.6 OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_906569 PE=4 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 9.341e-39
Identity = 78/93 (83.87%), Postives = 87/93 (93.55%), Query Frame = 2

Query:    2 DTKIINAASFTIEREDHTIGNILRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGFEAELLKFSKDY 280
            DTKIINAASFTIEREDHTIGNI+RMQLH+D NVLFAGY+LPHPL+YKII+RIHTTSQSSPMQAYNQ+INDLDKELD LK+ FEAE+ KFS  +
Sbjct:   24 DTKIINAASFTIEREDHTIGNIVRMQLHRDENVLFAGYQLPHPLKYKIIVRIHTTSQSSPMQAYNQAINDLDKELDYLKNQFEAEVAKFSNQF 116

[Close]

BLAST of Pisum_sativum_v1_Contig616 vs. TrEMBL
Match: A9PCB4_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_722670 PE=4 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 4.636e-38
Identity = 77/86 (89.53%), Postives = 83/86 (96.51%), Query Frame = 2

Query:    2 DTKIINAASFTIEREDHTIGNILRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGFEAEL 259
            DTKIINAASFT+EREDHTIGNILRMQLH+D NVLFAGYKLPHPL+YKII+RIHTTSQSSPMQAYNQ+INDLDKELD LK+ FEAEL
Sbjct:   24 DTKIINAASFTVEREDHTIGNILRMQLHRDDNVLFAGYKLPHPLKYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAEL 109

[Close]

BLAST of Pisum_sativum_v1_Contig616 vs. TrEMBL
Match: B9RVP3_RICCO (DNA-directed RNA polymerase II 13.6 kD polypeptide, putative OS=Ricinus communis GN=RCOM_0968040 PE=4 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 5.126e-37
Identity = 75/83 (90.36%), Postives = 80/83 (96.39%), Query Frame = 2

Query:    2 DTKIINAASFTIEREDHTIGNILRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGFE 250
            DTKIINAASFT+EREDHTIGNILRMQLH+D NVLFAGY+LPHPLQYKII+RIHTTSQSSPMQAYNQ+INDLDKELD LKS FE
Sbjct:   24 DTKIINAASFTVEREDHTIGNILRMQLHRDENVLFAGYRLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKSAFE 106

[Close]

BLAST of Pisum_sativum_v1_Contig616 vs. TrEMBL
Match: C5YC44_SORBI (Putative uncharacterized protein Sb06g001360 OS=Sorghum bicolor GN=Sb06g001360 PE=4 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.544e-36
Identity = 73/89 (82.02%), Postives = 82/89 (92.13%), Query Frame = 2

Query:    2 DTKIINAASFTIEREDHTIGNILRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGFEAELLKF 268
            DTKI+NAASFTIEREDHTIGNI+RMQLH+DPNVLFAGYKLPHPLQYKII+RIHTTSQSSP QAY+Q++NDLDKEL+ LK  FE E  +F
Sbjct:   24 DTKIVNAASFTIEREDHTIGNIVRMQLHRDPNVLFAGYKLPHPLQYKIIVRIHTTSQSSPTQAYSQAVNDLDKELEYLKQAFEDEKNRF 112

[Close]

BLAST of Pisum_sativum_v1_Contig616 vs. TrEMBL
Match: B4FJS1_MAIZE (DNA-directed RNA polymerase II subunit J OS=Zea mays PE=4 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 4.339e-36
Identity = 72/85 (84.71%), Postives = 79/85 (92.94%), Query Frame = 2

Query:    2 DTKIINAASFTIEREDHTIGNILRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGFEAE 256
            DTKI+NAASFT+EREDHT+GNILRMQLH+DPNVLFAGYKLPHPLQYKII+RIHTTSQSSP QAY Q+INDLDKEL+ LK  FE E
Sbjct:   24 DTKIVNAASFTVEREDHTVGNILRMQLHRDPNVLFAGYKLPHPLQYKIIVRIHTTSQSSPTQAYTQAINDLDKELEYLKQAFEDE 108

[Close]

BLAST of Pisum_sativum_v1_Contig616 vs. TrEMBL
Match: C5X6I3_SORBI (Putative uncharacterized protein Sb02g000210 OS=Sorghum bicolor GN=Sb02g000210 PE=4 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.649e-35
Identity = 70/91 (76.92%), Postives = 82/91 (90.11%), Query Frame = 2

Query:    2 DTKIINAASFTIEREDHTIGNILRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGFEAELLKFSK 274
            DTKI+NAASFT+EREDHT+GNILRMQLH+DPNVLFAGYKLPHPLQYKII+RIHT SQSSP QAY+Q++NDLDKEL+ LK  FE E  ++ +
Sbjct:   24 DTKIVNAASFTVEREDHTVGNILRMQLHRDPNVLFAGYKLPHPLQYKIIVRIHTMSQSSPTQAYSQAVNDLDKELEYLKQAFEDEKNRYEE 114

[Close]

BLAST of Pisum_sativum_v1_Contig616 vs. TAIR peptide
Match: AT3G52090.1 (| Symbols: ATRPB13.6, NRPB11, NRPD11, NRPE11 | DNA-directed RNA polymerase, RBP11-like | chr3:19318069-19318998 REVERSE LENGTH=116)

HSP 1 Score: 162.925 bits (411), Expect = 9.826e-41
Identity = 77/93 (82.80%), Postives = 87/93 (93.55%), Query Frame = 2

Query:    2 DTKIINAASFTIEREDHTIGNILRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGFEAELLKFSKDY 280
            DTKIINAASFT+EREDHTIGNI+RMQLH+D NVLFAGY+LPHPL+YKII+RIHTTSQSSPMQAYNQ+INDLDKELD LK+ FEAE+ KFS  +
Sbjct:   24 DTKIINAASFTVEREDHTIGNIVRMQLHRDENVLFAGYQLPHPLKYKIIVRIHTTSQSSPMQAYNQAINDLDKELDYLKNQFEAEVAKFSNQF 116

[Close]

BLAST of Pisum_sativum_v1_Contig616 vs. TAIR peptide
Match: AT3G52090.2 (| Symbols: NRPB11 | DNA-directed RNA polymerase, RBP11-like | chr3:19318069-19318998 REVERSE LENGTH=146)

HSP 1 Score: 147.132 bits (370), Expect = 5.580e-36
Identity = 77/123 (62.60%), Postives = 87/123 (70.73%), Query Frame = 2

Query:    2 DTKIINAASFTIEREDHTIGNILRMQLHKDPNVLFAGYKLPHPLQYKIIIR------------------------------IHTTSQSSPMQAYNQSINDLDKELDTLKSGFEAELLKFSKDY 280
            DTKIINAASFT+EREDHTIGNI+RMQLH+D NVLFAGY+LPHPL+YKII+R                              IHTTSQSSPMQAYNQ+INDLDKELD LK+ FEAE+ KFS  +
Sbjct:   24 DTKIINAASFTVEREDHTIGNIVRMQLHRDENVLFAGYQLPHPLKYKIIVRDPKDWFRNLKVVYGCLETVNISWFKLLVLTIHTTSQSSPMQAYNQAINDLDKELDYLKNQFEAEVAKFSNQF 146

[Close]

BLAST of Pisum_sativum_v1_Contig616 vs. TAIR peptide
Match: AT2G29540.2 (| Symbols: ATRPC14, ATRPAC14, RPC14 | RNApolymerase 14 kDa subunit | chr2:12642727-12643828 FORWARD LENGTH=122)

HSP 1 Score: 55.4546 bits (132), Expect = 2.209e-8
Identity = 26/88 (29.55%), Postives = 50/88 (56.82%), Query Frame = 2

Query:   14 INAASFTIEREDHTIGNILRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGFEAELLKFSKD 277
            ++ ASFT+  EDHT+ N +R  L++DP V  A Y +PHP   ++ IR+ TT   +  + +  +  +L +    ++S F+  + ++  +
Sbjct:    9 VSHASFTLSEEDHTLANAVRFVLNQDPRVTVAAYTIPHPSLEQVNIRVQTTGDPA-REVFKDACQELMQMNRHVRSVFDKAVAEYKDE 95

[Close]

BLAST of Pisum_sativum_v1_Contig616 vs. TAIR peptide
Match: AT2G29540.1 (| Symbols: ATRPC14, ATRPAC14, RPC14 | RNApolymerase 14 kDa subunit | chr2:12642727-12643828 FORWARD LENGTH=122)

HSP 1 Score: 55.4546 bits (132), Expect = 2.209e-8
Identity = 26/88 (29.55%), Postives = 50/88 (56.82%), Query Frame = 2

Query:   14 INAASFTIEREDHTIGNILRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQSSPMQAYNQSINDLDKELDTLKSGFEAELLKFSKD 277
            ++ ASFT+  EDHT+ N +R  L++DP V  A Y +PHP   ++ IR+ TT   +  + +  +  +L +    ++S F+  + ++  +
Sbjct:    9 VSHASFTLSEEDHTLANAVRFVLNQDPRVTVAAYTIPHPSLEQVNIRVQTTGDPA-REVFKDACQELMQMNRHVRSVFDKAVAEYKDE 95

The following BLAST results are available for this feature:

BLAST of Pisum_sativum_v1_Contig616 vs. SwissProt
BLAST of Pisum_sativum_v1_Contig616 vs. TrEMBL
BLAST of Pisum_sativum_v1_Contig616 vs. TAIR peptide

BLAST of Pisum_sativum_v1_Contig616 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Swissprot)
Total hits: 10


Match Name	E-value	Identity	Description
RPB11_ARATH	9.090e-40	82.80	DNA-directed RNA polymerase II subunit RPB11 OS=Ar...	[more]
RPB1B_HUMAN	1.722e-22	57.47	DNA-directed RNA polymerase II subunit RPB11-b1 OS...	[more]
RPB11_DROME	2.938e-22	57.83	DNA-directed RNA polymerase II subunit RPB11 OS=Dr...	[more]
RPB1C_HUMAN	3.837e-22	56.32	DNA-directed RNA polymerase II subunit RPB11-b2 OS...	[more]
RPB11_MOUSE	3.837e-22	55.81	DNA-directed RNA polymerase II subunit RPB11 OS=Mu...	[more]
RPB11_HUMAN	3.837e-22	55.81	DNA-directed RNA polymerase II subunit RPB11-a OS=...	[more]
RPB11_BOVIN	3.837e-22	55.81	DNA-directed RNA polymerase II subunit RPB11 OS=Bo...	[more]
RPB11_ANOGA	5.011e-22	54.35	DNA-directed RNA polymerase II subunit RPB11 OS=An...	[more]
RPB11_CAEEL	5.540e-21	54.55	Probable DNA-directed RNA polymerase II subunit RP...	[more]
RPB11_CAEBR	1.234e-20	52.27	Probable DNA-directed RNA polymerase II subunit RP...	[more]

BLAST of Pisum_sativum_v1_Contig616 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
B7FGH5_MEDTR	1.590e-46	100.00	Putative uncharacterized protein OS=Medicago trunc...	[more]
C6SW39_SOYBN	4.786e-43	90.32	Putative uncharacterized protein OS=Glycine max PE...	[more]
D7SV69_VITVI	2.904e-40	87.10	Whole genome shotgun sequence of line PN40024, sca...	[more]
A5BQX0_VITVI	2.904e-40	87.10	Putative uncharacterized protein OS=Vitis vinifera...	[more]
D7LU23_ARALY	9.341e-39	83.87	ATRPB13.6 OS=Arabidopsis lyrata subsp. lyrata GN=A...	[more]
A9PCB4_POPTR	4.636e-38	89.53	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
B9RVP3_RICCO	5.126e-37	90.36	DNA-directed RNA polymerase II 13.6 kD polypeptide...	[more]
C5YC44_SORBI	2.544e-36	82.02	Putative uncharacterized protein Sb06g001360 OS=So...	[more]
B4FJS1_MAIZE	4.339e-36	84.71	DNA-directed RNA polymerase II subunit J OS=Zea ma...	[more]
C5X6I3_SORBI	1.649e-35	76.92	Putative uncharacterized protein Sb02g000210 OS=So...	[more]

BLAST of Pisum_sativum_v1_Contig616 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide)
Total hits: 4


Match Name	E-value	Identity	Description
AT3G52090.1	9.826e-41	82.80	\| Symbols: ATRPB13.6, NRPB11, NRPD11, NRPE11 \| DNA...	[more]
AT3G52090.2	5.580e-36	62.60	\| Symbols: NRPB11 \| DNA-directed RNA polymerase, R...	[more]
AT2G29540.2	2.209e-8	29.55	\| Symbols: ATRPC14, ATRPAC14, RPC14 \| RNApolymeras...	[more]
AT2G29540.1	2.209e-8	29.55	\| Symbols: ATRPC14, ATRPAC14, RPC14 \| RNApolymeras...	[more]

InterPro

Analysis Name: InterProScan analysis for Pisum sativum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008193	DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved site	PROSITE	PS01154	RNA_POL_L_13KD	coord: 12..43 score
IPR009025	DNA-directed RNA polymerase, RBP11-like	SUPERFAMILY	55257	RBP11-like subunits of RNA polymerase	coord: 1..91 score: 1.5
IPR011261	DNA-directed RNA polymerase, dimerisation	PFAM	PF01193	RNA_pol_L	coord: 9..79 score: 2.1
None	No IPR available	GENE3D	3.30.1360.10	no description	coord: 2..90 score: 8.8
None	No IPR available	PANTHER	PTHR13946	DNA-DIRECTED RNA POLYMERASE I,II,III	coord: 1..88 score: 1.8
None	No IPR available	PANTHER	PTHR13946:SF16	DNA-DIRECTED RNA POLYMERASE II 13.3 KDA POLYPEPTIDE	coord: 1..88 score: 1.8
None	No IPR available	SEG	seg	seg	coord: 64..76 score
None	No IPR available	SEG	seg	seg	coord: 30..44 score

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>Pisum_sativum_v1_Contig616 ID=Pisum_sativum_v1_Contig616; Name=Pisum_sativum_v1_Contig616; organism=Pisum sativum; type=contig; length=548bp
GGACACCAAGATCATCAATGCTGCTTCTTTCACCATTGAAAGAGAAGATC
ACACTATCGGAAACATCCTCCGCATGCAACTCCACAAAGATCCCAACGTG
CTTTTCGCTGGATACAAGCTTCCTCATCCTCTTCAGTACAAAATTATTAT
TAGGATACACACCACCAGCCAGTCTTCACCAATGCAGGCATACAACCAGT
CTATTAACGATCTTGATAAGGAGCTTGATACCTTGAAGAGTGGTTTTGAG
GCTGAGTTGTTGAAGTTTTCCAAGGACTATTGATTTACAACAGTCAAGAT
GGAAGTTGTGTGACTTAGTAACCTTTTGAAGATACTGTGGCAGCAGATCA
GTCCAGTTAAATCATATTAAAATAGATATTTTGTATGGAATTCAAAGTTA
TATTAACAAAAATGCTTTAGAAGGAGGATTTGCACTGTGTATTAAAACAA
CCAACTACTAGTTTATTTCTGTTCTGTCACATGGATCTTGTGAATCATGG
ATTTCATGTCTAAATTTTTATTTACTGGGTTGAGTTTACTCCCTTGTC

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0003899	DNA-directed 5'-3' RNA polymerase activity
GO:0046983	protein dimerization activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006350	transcription

Vocabulary: **INTERPRO**
Term	Definition
IPR008193	RNA_pol_Rpb11_13-16kDa_CS
IPR009025	RBP11-like_dimer
IPR011261	DNA-directed RNA polymerase, dimerisation

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Pisum_sativum_v1_Contig616