Pisum_sativum_v1_Contig670

Contig Overview


Name	Pisum_sativum_v1_Contig670
Unique Name	Pisum_sativum_v1_Contig670
Type	contig
Organism	Pisum sativum (pea)
Sequence length	527

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
EX569558	EST	EX569558:242..401 +	Pisum sativum unigene v1	n/a
GH720724	EST	GH720724:136..477 +	Pisum sativum unigene v1	n/a
FG534445	EST	FG534445:1..527 +	Pisum sativum unigene v1	n/a

Unigenes

This contig is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Pisum sativum unigene v1	Pisum sativum unigene v1	contig

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Pisum sativum unigene v1	2010-12-27
Homology Analysis: Pisum sativum unigene v1 vs Trembl	2010-12-28
Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide	2011-02-03
InterProScan analysis for Pisum sativum unigene v1	2010-12-29

Relationships

The following EST feature(s) are a part of this contig:


Feature Name	Unique Name	Species	Type
EX569558	EX569558	Pisum sativum	EST
GH720724	GH720724	Pisum sativum	EST
FG534445	FG534445	Pisum sativum	EST

Homology

[Close]

BLAST of Pisum_sativum_v1_Contig670 vs. TrEMBL
Match: Q41050_PEA (Core protein OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 5.855e-39
Identity = 79/80 (98.75%), Postives = 80/80 (100.00%), Query Frame = 2

Query:    5 RSVAEDTFHIIRKGSISSNDFEKSLKKMCKEGAYWGAIAGVYVGMEYGVQRIRGTRDWKNAMFGGAVTGALVSAASNNKK 244
            RSVAEDTFHIIRKGSISSNDFEKSLKKMCKEGAYWGAIAGVYVGMEYGV+RIRGTRDWKNAMFGGAVTGALVSAASNNKK
Sbjct:   43 RSVAEDTFHIIRKGSISSNDFEKSLKKMCKEGAYWGAIAGVYVGMEYGVERIRGTRDWKNAMFGGAVTGALVSAASNNKK 122

HSP 2 Score: 21.557 bits (44), Expect = 5.855e-39
Identity = 11/29 (37.93%), Postives = 12/29 (41.38%), Query Frame = 3

Query:  231 ATTKKDKXXXXXXXXXXXXXXXEFINYLT 317
            +  KKDK               EFINYLT
Sbjct:  118 SNNKKDKIAVDAITGAAIATAAEFINYLT 146

[Close]

BLAST of Pisum_sativum_v1_Contig670 vs. TrEMBL
Match: C6SVB9_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 9.549e-35
Identity = 70/80 (87.50%), Postives = 76/80 (95.00%), Query Frame = 2

Query:    5 RSVAEDTFHIIRKGSISSNDFEKSLKKMCKEGAYWGAIAGVYVGMEYGVQRIRGTRDWKNAMFGGAVTGALVSAASNNKK 244
            RS AEDT+HII+KG+ISS+DFEK+LKKMCKEG YWG IAGVYVGMEYGV+RIRGTRDWKNAM GGAVTGALVSAASNNKK
Sbjct:   40 RSAAEDTYHIIQKGNISSHDFEKTLKKMCKEGVYWGTIAGVYVGMEYGVERIRGTRDWKNAMIGGAVTGALVSAASNNKK 119

[Close]

BLAST of Pisum_sativum_v1_Contig670 vs. TrEMBL
Match: C6SW13_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.045e-34
Identity = 70/80 (87.50%), Postives = 75/80 (93.75%), Query Frame = 2

Query:    5 RSVAEDTFHIIRKGSISSNDFEKSLKKMCKEGAYWGAIAGVYVGMEYGVQRIRGTRDWKNAMFGGAVTGALVSAASNNKK 244
            RS AEDT+HII+KG+ISS DFEK+LKKMCKEG YWG IAGVYVGMEYGV+RIRGTRDWKNAM GGAVTGALVSAASNNKK
Sbjct:   40 RSAAEDTYHIIQKGNISSRDFEKTLKKMCKEGVYWGTIAGVYVGMEYGVERIRGTRDWKNAMIGGAVTGALVSAASNNKK 119

HSP 2 Score: 21.557 bits (44), Expect = 1.045e-34
Identity = 11/29 (37.93%), Postives = 12/29 (41.38%), Query Frame = 3

Query:  231 ATTKKDKXXXXXXXXXXXXXXXEFINYLT 317
            +  KKDK               EFINYLT
Sbjct:  115 SNNKKDKIAIDAITGAAIATAAEFINYLT 143

[Close]

BLAST of Pisum_sativum_v1_Contig670 vs. TrEMBL
Match: B7FGP0_MEDTR (Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.991e-32
Identity = 67/79 (84.81%), Postives = 74/79 (93.67%), Query Frame = 2

Query:    5 RSVAEDTFHIIRKGSISSNDFEKSLKKMCKEGAYWGAIAGVYVGMEYGVQRIRGTRDWKNAMFGGAVTGALVSAASNNK 241
            R++AEDT+HI+RKGS+SS+DFEK+LKK  KEGAYWGAIAGVYVG EYGVQRIRGTRDWKNA FGGAVTGALVSAASN K
Sbjct:   43 RALAEDTYHIVRKGSVSSSDFEKTLKKTFKEGAYWGAIAGVYVGTEYGVQRIRGTRDWKNATFGGAVTGALVSAASNEK 121

[Close]

BLAST of Pisum_sativum_v1_Contig670 vs. TrEMBL
Match: C6TFJ4_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.844e-30
Identity = 61/80 (76.25%), Postives = 70/80 (87.50%), Query Frame = 2

Query:    5 RSVAEDTFHIIRKGSISSNDFEKSLKKMCKEGAYWGAIAGVYVGMEYGVQRIRGTRDWKNAMFGGAVTGALVSAASNNKK 244
            RS AEDT+HIIR G+ISS+DFEK+LKKMCKEG YWG +AGVY+GMEYGV+RIRGTRDWKNAM GGAVT  L+S A+ N K
Sbjct:   40 RSAAEDTYHIIRNGNISSHDFEKTLKKMCKEGVYWGTLAGVYLGMEYGVERIRGTRDWKNAMIGGAVTATLLSVATTNNK 119

HSP 2 Score: 21.1718 bits (43), Expect = 1.844e-30
Identity = 11/28 (39.29%), Postives = 11/28 (39.29%), Query Frame = 3

Query:  234 TTKKDKXXXXXXXXXXXXXXXEFINYLT 317
            T  KDK               EFINYLT
Sbjct:  116 TNNKDKIVPDAITGAAIATAAEFINYLT 143

[Close]

BLAST of Pisum_sativum_v1_Contig670 vs. TrEMBL
Match: Q5CZ54_SOLTU (Pom14 protein OS=Solanum tuberosum GN=pom14 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.023e-28
Identity = 56/80 (70.00%), Postives = 71/80 (88.75%), Query Frame = 2

Query:    5 RSVAEDTFHIIRKGSISSNDFEKSLKKMCKEGAYWGAIAGVYVGMEYGVQRIRGTRDWKNAMFGGAVTGALVSAASNNKK 244
            ++VAE+T+ ++ +GS+SS++FEKSLKKMCKEGAYWG +AGVY GMEYG +RIRGT DWKNAM GGA+TGAL+SAA NN +
Sbjct:   43 KTVAEETYGMVTRGSVSSHNFEKSLKKMCKEGAYWGTVAGVYAGMEYGAERIRGTNDWKNAMIGGALTGALISAACNNNR 122

[Close]

BLAST of Pisum_sativum_v1_Contig670 vs. TrEMBL
Match: B9T3N6_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1166150 PE=4 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.477e-27
Identity = 54/80 (67.50%), Postives = 69/80 (86.25%), Query Frame = 2

Query:    5 RSVAEDTFHIIRKGSISSNDFEKSLKKMCKEGAYWGAIAGVYVGMEYGVQRIRGTRDWKNAMFGGAVTGALVSAASNNKK 244
            R +AED ++ +++GS+S   FE +LKKMCKEGAYWG +AG+YVGMEYG++RIRG+RDWKNAM GGA+TGAL+SAASN  K
Sbjct:   43 RVLAEDAYYAVKRGSLSGRSFEHTLKKMCKEGAYWGTVAGLYVGMEYGMERIRGSRDWKNAMLGGALTGALISAASNKSK 122

[Close]

BLAST of Pisum_sativum_v1_Contig670 vs. TrEMBL
Match: O82688_HORVU (Amino acid selective channel protein OS=Hordeum vulgare GN=cor tmc-ap3 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.929e-27
Identity = 57/79 (72.15%), Postives = 65/79 (82.28%), Query Frame = 2

Query:    5 RSVAEDTFHIIRKGSISSNDFEKSLKKMCKEGAYWGAIAGVYVGMEYGVQRIRGTRDWKNAMFGGAVTGALVSAASNNK 241
            R VAED F  + +G IS    E++LKKMCKEGAYWGA+AGVYVGMEYGV+R+RG RDWKNA+ GG  TGALVSAASNNK
Sbjct:   41 RVVAEDAFDCLHRGDISKRQLEETLKKMCKEGAYWGAVAGVYVGMEYGVERVRGDRDWKNALIGGIATGALVSAASNNK 119

[Close]

BLAST of Pisum_sativum_v1_Contig670 vs. TrEMBL
Match: A9PFS3_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_706161 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 9.572e-27
Identity = 53/80 (66.25%), Postives = 67/80 (83.75%), Query Frame = 2

Query:    5 RSVAEDTFHIIRKGSISSNDFEKSLKKMCKEGAYWGAIAGVYVGMEYGVQRIRGTRDWKNAMFGGAVTGALVSAASNNKK 244
            +S+AED +++++ G+ S    E SLKKMCKEGAYWG +AG+YVGMEYG++RIRGT DWKNAM GGA+TGAL+SAASN  K
Sbjct:   43 KSLAEDAYYVVKGGNFSGRKIEHSLKKMCKEGAYWGTVAGMYVGMEYGMERIRGTHDWKNAMLGGALTGALISAASNKSK 122

[Close]

BLAST of Pisum_sativum_v1_Contig670 vs. TrEMBL
Match: B8A9Y0_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_05414 PE=4 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.633e-26
Identity = 58/80 (72.50%), Postives = 67/80 (83.75%), Query Frame = 2

Query:   14 AEDTFHIIRKGSISSNDFEKSLKKMCKEGAYWGAIAGVYVGMEYGVQRIRGTRDWKNAMFGGAVTGALVSAASNNKKRQN 253
            AE+TF  + +G +S +  E +LKKMCKEGAYWG IAGVYVGMEYG++RIRG RDWKNAM GGAVTGALVSAASN+  RQN
Sbjct:   46 AEETFECLHRGDVSKHKVESALKKMCKEGAYWGTIAGVYVGMEYGIERIRGHRDWKNAMVGGAVTGALVSAASNS-HRQN 124

[Close]

BLAST of Pisum_sativum_v1_Contig670 vs. TAIR peptide
Match: AT2G28900.1 (| Symbols: OEP16, ATOEP16-L, ATOEP16-1, OEP16-1 | outer plastid envelope protein 16-1 | chr2:12414423-12415459 REVERSE LENGTH=148)

HSP 1 Score: 109.768 bits (273), Expect = 9.087e-25
Identity = 48/80 (60.00%), Postives = 61/80 (76.25%), Query Frame = 2

Query:    5 RSVAEDTFHIIRKGSISSNDFEKSLKKMCKEGAYWGAIAGVYVGMEYGVQRIRGTRDWKNAMFGGAVTGALVSAASNNKK 244
            +S+AEDT+  I KGS+S +  E +LKK+CKEG YWGA  GVY+G EYG++RIRG+RDWKNAM  GA TGA++SA     K
Sbjct:   43 KSLAEDTYKAIDKGSLSKSTLEHALKKLCKEGVYWGAAGGVYIGTEYGIERIRGSRDWKNAMLAGAATGAVLSAVGKKGK 122

[Close]

BLAST of Pisum_sativum_v1_Contig670 vs. TAIR peptide
Match: AT4G16160.2 (| Symbols: ATOEP16-2, ATOEP16-S | Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein | chr4:9157545-9158738 FORWARD LENGTH=178)

HSP 1 Score: 51.9878 bits (123), Expect = 2.249e-7
Identity = 23/64 (35.94%), Postives = 37/64 (57.81%), Query Frame = 2

Query:   53 SSNDFEKSLKKMCKEGAYWGAIAGVYVGMEYGVQRIR-GTRDWKNAMFGGAVTGALVSAASNNK 241
            SS   +  +K   KE   WG  AG+Y G+ YG+  +R G  DW+N+   GA+TGA ++  ++ +
Sbjct:   88 SSKSLDALVKNTGKESLQWGLAAGLYSGITYGMTEVRGGAHDWRNSAVAGALTGAAMAMTTSER 151

[Close]

BLAST of Pisum_sativum_v1_Contig670 vs. TAIR peptide
Match: AT4G16160.1 (| Symbols: ATOEP16-2, ATOEP16-S | Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein | chr4:9157545-9158738 FORWARD LENGTH=176)

HSP 1 Score: 51.9878 bits (123), Expect = 2.249e-7
Identity = 23/64 (35.94%), Postives = 37/64 (57.81%), Query Frame = 2

Query:   53 SSNDFEKSLKKMCKEGAYWGAIAGVYVGMEYGVQRIR-GTRDWKNAMFGGAVTGALVSAASNNK 241
            SS   +  +K   KE   WG  AG+Y G+ YG+  +R G  DW+N+   GA+TGA ++  ++ +
Sbjct:   86 SSKSLDALVKNTGKESLQWGLAAGLYSGITYGMTEVRGGAHDWRNSAVAGALTGAAMAMTTSER 149

The following BLAST results are available for this feature:

BLAST of Pisum_sativum_v1_Contig670 vs. TrEMBL
BLAST of Pisum_sativum_v1_Contig670 vs. TAIR peptide

BLAST of Pisum_sativum_v1_Contig670 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
Q41050_PEA	5.855e-39	98.75	Core protein OS=Pisum sativum PE=2 SV=1	[more]
C6SVB9_SOYBN	9.549e-35	87.50	Putative uncharacterized protein OS=Glycine max PE...	[more]
C6SW13_SOYBN	1.045e-34	87.50	Putative uncharacterized protein OS=Glycine max PE...	[more]
B7FGP0_MEDTR	1.991e-32	84.81	Putative uncharacterized protein OS=Medicago trunc...	[more]
C6TFJ4_SOYBN	1.844e-30	76.25	Putative uncharacterized protein OS=Glycine max PE...	[more]
Q5CZ54_SOLTU	1.023e-28	70.00	Pom14 protein OS=Solanum tuberosum GN=pom14 PE=2 S...	[more]
B9T3N6_RICCO	1.477e-27	67.50	Putative uncharacterized protein OS=Ricinus commun...	[more]
O82688_HORVU	1.929e-27	72.15	Amino acid selective channel protein OS=Hordeum vu...	[more]
A9PFS3_POPTR	9.572e-27	66.25	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
B8A9Y0_ORYSI	1.633e-26	72.50	Putative uncharacterized protein OS=Oryza sativa s...	[more]

BLAST of Pisum_sativum_v1_Contig670 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide)
Total hits: 3


Match Name	E-value	Identity	Description
AT2G28900.1	9.087e-25	60.00	\| Symbols: OEP16, ATOEP16-L, ATOEP16-1, OEP16-1 \| ...	[more]
AT4G16160.2	2.249e-7	35.94	\| Symbols: ATOEP16-2, ATOEP16-S \| Mitochondrial im...	[more]
AT4G16160.1	2.249e-7	35.94	\| Symbols: ATOEP16-2, ATOEP16-S \| Mitochondrial im...	[more]

InterPro

Analysis Name: InterProScan analysis for Pisum sativum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003397	Mitochondrial inner membrane translocase complex, subunit Tim17/22	PFAM	PF02466	Tim17	coord: 16..79 score: 5.1
None	No IPR available	SEG	seg	seg	coord: 3..13 score
None	No IPR available	SEG	seg	seg	coord: 4..19 score

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>Pisum_sativum_v1_Contig670 ID=Pisum_sativum_v1_Contig670; Name=Pisum_sativum_v1_Contig670; organism=Pisum sativum; type=contig; length=527bp
AATAAGATCAGTTGCAGAGGATACCTTTCATATCATTCGAAAGGGAAGTA
TCTCAAGTAATGATTTTGAGAAATCTCTGAAGAAGATGTGTAAAGAAGGT
GCATACTGGGGAGCTATAGCCGGCGTATATGTTGGAATGGAATATGGTGT
CCAGAGGATCCGTGGCACCAGGGACTGGAAGAATGCCATGTTCGGAGGTG
CAGTGACAGGGGCTCTGGTATCTGCAGCCAGCAACAACAAAAAAAGACAA
AATTGCAGTAGATGCCATTACAGGTGCTGCAATTGCGACAGCTGCAGAAT
TCATAAATTACCTTACCTGAAAGAACAAGACTGGATGTGTTATTTCACTT
GGTCTCCGTTGTCTTTGTGTTACTGGTTATGTAATAATTTTGATGCAATG
ACTAATAAGATGTATTCAGCTCTTAACATGTTTTGTCAATGACATGCTCA
CTGTTCAGCTCAATTTTCAGTCTCTGGATAAATGGATTATGGTATAGGGA
GGACTGAGGATATACATGGTTTAAATT

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005743	mitochondrial inner membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0008565	obsolete protein transporter activity

Vocabulary: **Biological Process**
Term	Definition
GO:0015031	protein transport

Vocabulary: **INTERPRO**
Term	Definition
IPR003397	Tim17/Tim22/Tim23/PMP24

Search form

Pisum_sativum_v1_Contig670