Pisum_sativum_v1_Contig712

Contig Overview
NamePisum_sativum_v1_Contig712
Unique NamePisum_sativum_v1_Contig712
Typecontig
OrganismPisum sativum (pea)
Sequence length689
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
FG534202ESTFG534202:1..564 +Pisum sativum unigene v1n/a
FG531155ESTFG531155:116..574 +Pisum sativum unigene v1n/a
EX570930ESTEX570930:8..689 +Pisum sativum unigene v1n/a
Unigenes
This contig is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Pisum sativum unigene v1Pisum sativum unigene v1contig
Relationships

The following EST feature(s) are a part of this contig:

Feature NameUnique NameSpeciesType
FG534202FG534202Pisum sativumEST
FG531155FG531155Pisum sativumEST
EX570930EX570930Pisum sativumEST


Homology
[Close]
BLAST of Pisum_sativum_v1_Contig712 vs. SwissProt
Match: T2AG_ARATH (Transcription initiation factor IIA subunit 2 OS=Arabidopsis thaliana GN=TFIIA-S PE=2 SV=2)

HSP 1 Score: 196.052 bits (497), Expect = 1.542e-49
Identity = 96/106 (90.57%), Postives = 103/106 (97.17%), Query Frame = 2 
Query:   47 MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALETKVKSKVSIKGHLHTYRFCDNVWTFILQDALLKNEDSQENVGRVKIVACDSKLLSQ 364
            MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALE++VK+KVSIKGHLHTYRFCDNVWTFILQDA+ K++D QENV RVKIVACDSKLL+Q
Sbjct:    1 MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKTKVSIKGHLHTYRFCDNVWTFILQDAMFKSDDRQENVSRVKIVACDSKLLTQ 106
[Close]
BLAST of Pisum_sativum_v1_Contig712 vs. SwissProt
Match: T2AG_ORYSJ (Transcription initiation factor IIA subunit 2 OS=Oryza sativa subsp. japonica GN=TFIIAy PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.443e-47
Identity = 94/106 (88.68%), Postives = 99/106 (93.40%), Query Frame = 2 
Query:   47 MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALETKVKSKVSIKGHLHTYRFCDNVWTFILQDALLKNEDSQENVGRVKIVACDSKLLSQ 364
            MATFELYRRSTIGMCLTETLDEMV SGTLSPELAIQVLVQFDKSMTEALE +VKSKVSIKGHLHTYRFCDNVWTFIL +A  KNE++ E VG+VKIVACDSKLLSQ
Sbjct:    1 MATFELYRRSTIGMCLTETLDEMVSSGTLSPELAIQVLVQFDKSMTEALENQVKSKVSIKGHLHTYRFCDNVWTFILTEASFKNEETTEQVGKVKIVACDSKLLSQ 106
[Close]
BLAST of Pisum_sativum_v1_Contig712 vs. SwissProt
Match: T2AG_ORYSI (Transcription initiation factor IIA subunit 2 OS=Oryza sativa subsp. indica GN=TFIIAy PE=3 SV=2)

HSP 1 Score: 189.504 bits (480), Expect = 1.443e-47
Identity = 94/106 (88.68%), Postives = 99/106 (93.40%), Query Frame = 2 
Query:   47 MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALETKVKSKVSIKGHLHTYRFCDNVWTFILQDALLKNEDSQENVGRVKIVACDSKLLSQ 364
            MATFELYRRSTIGMCLTETLDEMV SGTLSPELAIQVLVQFDKSMTEALE +VKSKVSIKGHLHTYRFCDNVWTFIL +A  KNE++ E VG+VKIVACDSKLLSQ
Sbjct:    1 MATFELYRRSTIGMCLTETLDEMVSSGTLSPELAIQVLVQFDKSMTEALENQVKSKVSIKGHLHTYRFCDNVWTFILTEASFKNEETTEQVGKVKIVACDSKLLSQ 106
[Close]
BLAST of Pisum_sativum_v1_Contig712 vs. SwissProt
Match: T2AG_ONCMY (Transcription initiation factor IIA subunit 2 OS=Oncorhynchus mykiss GN=gtf2a2 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.314e-24
Identity = 50/99 (50.51%), Postives = 74/99 (74.75%), Query Frame = 2 
Query:   56 FELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALETKVKSKVSIKGHLHTYRFCDNVWTFILQDALLKNEDSQENVGRVKIVACDSK 352
            ++LYR +T+G  L E+LDE++Q+  ++P+LA+QVL+QFDK++  AL  +V+++V+ KG L+TYRFCDNVWTF+L D   +       V +VKIVACD K
Sbjct:    3 YQLYRNTTLGNSLQESLDELIQTQQITPQLALQVLLQFDKAINTALANRVRNRVNFKGSLNTYRFCDNVWTFVLNDVEFREVTDLVKVDKVKIVACDGK 101
[Close]
BLAST of Pisum_sativum_v1_Contig712 vs. SwissProt
Match: T2AG_RAT (Transcription initiation factor IIA subunit 2 OS=Rattus norvegicus GN=Gtf2a2 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.717e-24
Identity = 50/99 (50.51%), Postives = 74/99 (74.75%), Query Frame = 2 
Query:   56 FELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALETKVKSKVSIKGHLHTYRFCDNVWTFILQDALLKNEDSQENVGRVKIVACDSK 352
            ++LYR +T+G  L E+LDE++QS  ++P+LA+QVL+QFDK++  AL  +V+++V+ +G L+TYRFCDNVWTF+L D   +       V +VKIVACD K
Sbjct:    3 YQLYRNTTLGNSLQESLDELIQSQQITPQLALQVLLQFDKAINSALAQRVRNRVNFRGSLNTYRFCDNVWTFVLNDVEFREVTELIKVDKVKIVACDGK 101
[Close]
BLAST of Pisum_sativum_v1_Contig712 vs. SwissProt
Match: T2AG_MOUSE (Transcription initiation factor IIA subunit 2 OS=Mus musculus GN=Gtf2a2 PE=2 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 1.717e-24
Identity = 50/99 (50.51%), Postives = 74/99 (74.75%), Query Frame = 2 
Query:   56 FELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALETKVKSKVSIKGHLHTYRFCDNVWTFILQDALLKNEDSQENVGRVKIVACDSK 352
            ++LYR +T+G  L E+LDE++QS  ++P+LA+QVL+QFDK++  AL  +V+++V+ +G L+TYRFCDNVWTF+L D   +       V +VKIVACD K
Sbjct:    3 YQLYRNTTLGNSLQESLDELIQSQQITPQLALQVLLQFDKAINSALAQRVRNRVNFRGSLNTYRFCDNVWTFVLNDVEFREVTELIKVDKVKIVACDGK 101
[Close]
BLAST of Pisum_sativum_v1_Contig712 vs. SwissProt
Match: T2AG_PAROL (Transcription initiation factor IIA subunit 2 OS=Paralichthys olivaceus GN=gtf2a2 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.242e-24
Identity = 49/99 (49.49%), Postives = 75/99 (75.76%), Query Frame = 2 
Query:   56 FELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALETKVKSKVSIKGHLHTYRFCDNVWTFILQDALLKNEDSQENVGRVKIVACDSK 352
            ++LYR +T+G  L E+LDE++Q+  ++P+LA+QVL+QFDK++  AL ++V+++V+ +G L+TYRFCDNVWTF+L D   +       V +VKIVACD K
Sbjct:    3 YQLYRNTTLGNSLQESLDELIQTQQITPQLALQVLLQFDKAINTALASRVRNRVNFRGSLNTYRFCDNVWTFVLNDVEFREVTDLVKVDKVKIVACDGK 101
[Close]
BLAST of Pisum_sativum_v1_Contig712 vs. SwissProt
Match: T2AG_HUMAN (Transcription initiation factor IIA subunit 2 OS=Homo sapiens GN=GTF2A2 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.242e-24
Identity = 50/99 (50.51%), Postives = 74/99 (74.75%), Query Frame = 2 
Query:   56 FELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALETKVKSKVSIKGHLHTYRFCDNVWTFILQDALLKNEDSQENVGRVKIVACDSK 352
            ++LYR +T+G  L E+LDE++QS  ++P+LA+QVL+QFDK++  AL  +V+++V+ +G L+TYRFCDNVWTF+L D   +       V +VKIVACD K
Sbjct:    3 YQLYRNTTLGNSLQESLDELIQSQQITPQLALQVLLQFDKAINAALAQRVRNRVNFRGSLNTYRFCDNVWTFVLNDVEFREVTELIKVDKVKIVACDGK 101
[Close]
BLAST of Pisum_sativum_v1_Contig712 vs. SwissProt
Match: T2AG_DICDI (Transcription initiation factor IIA subunit 2 OS=Dictyostelium discoideum GN=gtf2a2 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.453e-23
Identity = 54/101 (53.47%), Postives = 75/101 (74.26%), Query Frame = 2 
Query:   56 FELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALETKVKSKVSIKGHLHTYRFCDNVWTFILQDALLKNEDSQ-ENVGRVKIVACDSKL 355
            +ELYR+STIG  LT+TL+E++ +  +S  L  ++L QFDK++ EAL   VK+K + KG LHTYRFCD+VWTFIL++A  K E ++   V RVKIVACD+ +
Sbjct:    8 YELYRKSTIGEALTDTLEELLINQYISNSLYQKILTQFDKTINEALSNTVKAKTTFKGSLHTYRFCDSVWTFILENAQFKTEANEIVKVDRVKIVACDANV 108
[Close]
BLAST of Pisum_sativum_v1_Contig712 vs. SwissProt
Match: T2AG_SCHPO (Probable transcription initiation factor IIA small chain OS=Schizosaccharomyces pombe GN=SPCC553.11c PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.419e-23
Identity = 49/99 (49.49%), Postives = 73/99 (73.74%), Query Frame = 2 
Query:   56 FELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALETKVKSKVSIKGHLHTYRFCDNVWTFILQDALLKNEDSQENVGRVKIVACDSK 352
            +ELYRRS I   LT+ LD+++  G +SP+LA++VL  FDKSMTEAL  KV+S+++ KGHL TYRFCD VWTFI+++   + ++      +++IVAC ++
Sbjct:    5 YELYRRSRIS--LTDALDDLISQGKISPQLAMKVLFNFDKSMTEALAEKVRSRLTFKGHLDTYRFCDEVWTFIIKNPSFRFDNETVTSNKIRIVACATR 101
[Close]
BLAST of Pisum_sativum_v1_Contig712 vs. TrEMBL
Match: B9SMZ0_RICCO (Transcription initiation factor iia (Tfiia), gamma chain, putative OS=Ricinus communis GN=RCOM_0482790 PE=4 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 3.771e-51
Identity = 102/106 (96.23%), Postives = 105/106 (99.06%), Query Frame = 2 
Query:   47 MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALETKVKSKVSIKGHLHTYRFCDNVWTFILQDALLKNEDSQENVGRVKIVACDSKLLSQ 364
            MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALE++VKSKVSIKGHLHTYRFCDNVWTFILQDAL KNEDSQENVGRVKIVACDSKLL+Q
Sbjct:    1 MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDALFKNEDSQENVGRVKIVACDSKLLTQ 106
[Close]
BLAST of Pisum_sativum_v1_Contig712 vs. TrEMBL
Match: B7FH46_MEDTR (Putative uncharacterized protein OS=Medicago truncatula PE=4 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 4.925e-51
Identity = 101/106 (95.28%), Postives = 105/106 (99.06%), Query Frame = 2 
Query:   47 MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALETKVKSKVSIKGHLHTYRFCDNVWTFILQDALLKNEDSQENVGRVKIVACDSKLLSQ 364
            MATFELYRRSTIGMCLTETLDEMVQ+GTLSPE+AIQVLVQFDKSMTEALET+VKSKVSIKGHLHTYRFCDNVWTFILQDAL KNED+QENVGRVKIVACDSKLLSQ
Sbjct:    1 MATFELYRRSTIGMCLTETLDEMVQNGTLSPEIAIQVLVQFDKSMTEALETQVKSKVSIKGHLHTYRFCDNVWTFILQDALFKNEDNQENVGRVKIVACDSKLLSQ 106
[Close]
BLAST of Pisum_sativum_v1_Contig712 vs. TrEMBL
Match: B9H6S7_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_831453 PE=4 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 2.444e-50
Identity = 99/106 (93.40%), Postives = 104/106 (98.11%), Query Frame = 2 
Query:   47 MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALETKVKSKVSIKGHLHTYRFCDNVWTFILQDALLKNEDSQENVGRVKIVACDSKLLSQ 364
            MATFELYRRSTIGMCLTETLD+MVQ+GTLSPELA QVLVQFDKSMTEALETKVKSKVSIKGHLHTYRFCDNVWTFILQDA+ KNED+QENVGRVKIVACDSKLL+Q
Sbjct:    1 MATFELYRRSTIGMCLTETLDDMVQNGTLSPELAFQVLVQFDKSMTEALETKVKSKVSIKGHLHTYRFCDNVWTFILQDAMFKNEDTQENVGRVKIVACDSKLLTQ 106
[Close]
BLAST of Pisum_sativum_v1_Contig712 vs. TrEMBL
Match: A5AJ11_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_015528 PE=4 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 5.445e-50
Identity = 99/106 (93.40%), Postives = 105/106 (99.06%), Query Frame = 2 
Query:   47 MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALETKVKSKVSIKGHLHTYRFCDNVWTFILQDALLKNEDSQENVGRVKIVACDSKLLSQ 364
            MATFELYRRSTIGMCLTETLDEMVQ+GTLSPELAIQVLVQFDKSMTEALE++VKSKV+IKGHLHTYRFCDNVWTFILQDAL KNE+SQENVGRVKIVACDSKLL+Q
Sbjct:    1 MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIKGHLHTYRFCDNVWTFILQDALFKNEESQENVGRVKIVACDSKLLTQ 106
[Close]
BLAST of Pisum_sativum_v1_Contig712 vs. TrEMBL
Match: Q53YU1_ARATH (AT4G24440 protein (Fragment) OS=Arabidopsis thaliana GN=AT4G24440 PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 2.288e-48
Identity = 96/106 (90.57%), Postives = 103/106 (97.17%), Query Frame = 2 
Query:   47 MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALETKVKSKVSIKGHLHTYRFCDNVWTFILQDALLKNEDSQENVGRVKIVACDSKLLSQ 364
            MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALE++VK+KVSIKGHLHTYRFCDNVWTFILQDA+ K++D QENV RVKIVACDSKLL+Q
Sbjct:    1 MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKTKVSIKGHLHTYRFCDNVWTFILQDAMFKSDDRQENVSRVKIVACDSKLLTQ 106
[Close]
BLAST of Pisum_sativum_v1_Contig712 vs. TrEMBL
Match: D7M8U2_ARALY (Transcription initiation factor IIA gamma chain OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_914144 PE=4 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 2.288e-48
Identity = 96/106 (90.57%), Postives = 103/106 (97.17%), Query Frame = 2 
Query:   47 MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALETKVKSKVSIKGHLHTYRFCDNVWTFILQDALLKNEDSQENVGRVKIVACDSKLLSQ 364
            MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALE++VK+KVSIKGHLHTYRFCDNVWTFILQDA+ K++D QENV RVKIVACDSKLL+Q
Sbjct:    1 MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKTKVSIKGHLHTYRFCDNVWTFILQDAMFKSDDRQENVSRVKIVACDSKLLTQ 106
[Close]
BLAST of Pisum_sativum_v1_Contig712 vs. TrEMBL
Match: B8AWX2_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_18140 PE=4 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 2.141e-46
Identity = 94/106 (88.68%), Postives = 99/106 (93.40%), Query Frame = 2 
Query:   47 MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALETKVKSKVSIKGHLHTYRFCDNVWTFILQDALLKNEDSQENVGRVKIVACDSKLLSQ 364
            MATFELYRRSTIGMCLTETLDEMV SGTLSPELAIQVLVQFDKSMTEALE +VKSKVSIKGHLHTYRFCDNVWTFIL +A  KNE++ E VG+VKIVACDSKLLSQ
Sbjct:    1 MATFELYRRSTIGMCLTETLDEMVSSGTLSPELAIQVLVQFDKSMTEALENQVKSKVSIKGHLHTYRFCDNVWTFILTEASFKNEETTEQVGKVKIVACDSKLLSQ 106
[Close]
BLAST of Pisum_sativum_v1_Contig712 vs. TrEMBL
Match: B7EAK7_ORYSJ (Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_16831 PE=4 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 2.141e-46
Identity = 94/106 (88.68%), Postives = 99/106 (93.40%), Query Frame = 2 
Query:   47 MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALETKVKSKVSIKGHLHTYRFCDNVWTFILQDALLKNEDSQENVGRVKIVACDSKLLSQ 364
            MATFELYRRSTIGMCLTETLDEMV SGTLSPELAIQVLVQFDKSMTEALE +VKSKVSIKGHLHTYRFCDNVWTFIL +A  KNE++ E VG+VKIVACDSKLLSQ
Sbjct:    1 MATFELYRRSTIGMCLTETLDEMVSSGTLSPELAIQVLVQFDKSMTEALENQVKSKVSIKGHLHTYRFCDNVWTFILTEASFKNEETTEQVGKVKIVACDSKLLSQ 106
[Close]
BLAST of Pisum_sativum_v1_Contig712 vs. TrEMBL
Match: C5YY13_SORBI (Putative uncharacterized protein Sb09g000610 OS=Sorghum bicolor GN=Sb09g000610 PE=4 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 1.063e-45
Identity = 92/106 (86.79%), Postives = 98/106 (92.45%), Query Frame = 2 
Query:   47 MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALETKVKSKVSIKGHLHTYRFCDNVWTFILQDALLKNEDSQENVGRVKIVACDSKLLSQ 364
            MATFELYRRSTIGMCLTETLDEMV SGTLSPELAIQVLVQFDKSMT+ALE +VKSKV+IKGHLHTYRFCDNVWTFIL DA  KNE++ E VG+VKIVACDSKLL Q
Sbjct:    1 MATFELYRRSTIGMCLTETLDEMVSSGTLSPELAIQVLVQFDKSMTDALENQVKSKVNIKGHLHTYRFCDNVWTFILTDASFKNEETTEQVGKVKIVACDSKLLGQ 106
[Close]
BLAST of Pisum_sativum_v1_Contig712 vs. TrEMBL
Match: B6SSE1_MAIZE (Putative uncharacterized protein OS=Zea mays PE=4 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 3.092e-45
Identity = 90/106 (84.91%), Postives = 98/106 (92.45%), Query Frame = 2 
Query:   47 MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALETKVKSKVSIKGHLHTYRFCDNVWTFILQDALLKNEDSQENVGRVKIVACDSKLLSQ 364
            MATFELYRRSTIGMCLTETLDEMV +GTLSPELAIQVLVQFDKSMT+ALE +VKSKV++KGHLHTYRFCDNVWTFIL DA  KNE++ E VG+VKIVACDSKLL Q
Sbjct:    1 MATFELYRRSTIGMCLTETLDEMVSNGTLSPELAIQVLVQFDKSMTDALENQVKSKVTVKGHLHTYRFCDNVWTFILTDASFKNEEATEQVGKVKIVACDSKLLGQ 106
[Close]
BLAST of Pisum_sativum_v1_Contig712 vs. TAIR peptide
Match: AT4G24440.2 (| Symbols: | transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S) | chr4:12633460-12634553 FORWARD LENGTH=106)

HSP 1 Score: 196.052 bits (497), Expect = 1.556e-50
Identity = 96/106 (90.57%), Postives = 103/106 (97.17%), Query Frame = 2 
Query:   47 MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALETKVKSKVSIKGHLHTYRFCDNVWTFILQDALLKNEDSQENVGRVKIVACDSKLLSQ 364
            MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALE++VK+KVSIKGHLHTYRFCDNVWTFILQDA+ K++D QENV RVKIVACDSKLL+Q
Sbjct:    1 MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKTKVSIKGHLHTYRFCDNVWTFILQDAMFKSDDRQENVSRVKIVACDSKLLTQ 106
[Close]
BLAST of Pisum_sativum_v1_Contig712 vs. TAIR peptide
Match: AT4G24440.1 (| Symbols: | transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S) | chr4:12633460-12634553 FORWARD LENGTH=106)

HSP 1 Score: 196.052 bits (497), Expect = 1.556e-50
Identity = 96/106 (90.57%), Postives = 103/106 (97.17%), Query Frame = 2 
Query:   47 MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALETKVKSKVSIKGHLHTYRFCDNVWTFILQDALLKNEDSQENVGRVKIVACDSKLLSQ 364
            MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALE++VK+KVSIKGHLHTYRFCDNVWTFILQDA+ K++D QENV RVKIVACDSKLL+Q
Sbjct:    1 MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKTKVSIKGHLHTYRFCDNVWTFILQDAMFKSDDRQENVSRVKIVACDSKLLTQ 106
The following BLAST results are available for this feature:
BLAST of Pisum_sativum_v1_Contig712 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Swissprot)
Total hits: 10
Match NameE-valueIdentityDescription
T2AG_ARATH1.542e-4990.57Transcription initiation factor IIA subunit 2 OS=A... [more]
T2AG_ORYSJ1.443e-4788.68Transcription initiation factor IIA subunit 2 OS=O... [more]
T2AG_ORYSI1.443e-4788.68Transcription initiation factor IIA subunit 2 OS=O... [more]
T2AG_ONCMY1.314e-2450.51Transcription initiation factor IIA subunit 2 OS=O... [more]
T2AG_RAT1.717e-2450.51Transcription initiation factor IIA subunit 2 OS=R... [more]
T2AG_MOUSE1.717e-2450.51Transcription initiation factor IIA subunit 2 OS=M... [more]
T2AG_PAROL2.242e-2449.49Transcription initiation factor IIA subunit 2 OS=P... [more]
T2AG_HUMAN2.242e-2450.51Transcription initiation factor IIA subunit 2 OS=H... [more]
T2AG_DICDI1.453e-2353.47Transcription initiation factor IIA subunit 2 OS=D... [more]
T2AG_SCHPO9.419e-2349.49Probable transcription initiation factor IIA small... [more]
back to top
BLAST of Pisum_sativum_v1_Contig712 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
B9SMZ0_RICCO3.771e-5196.23Transcription initiation factor iia (Tfiia), gamma... [more]
B7FH46_MEDTR4.925e-5195.28Putative uncharacterized protein OS=Medicago trunc... [more]
B9H6S7_POPTR2.444e-5093.40Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
A5AJ11_VITVI5.445e-5093.40Putative uncharacterized protein OS=Vitis vinifera... [more]
Q53YU1_ARATH2.288e-4890.57AT4G24440 protein (Fragment) OS=Arabidopsis thalia... [more]
D7M8U2_ARALY2.288e-4890.57Transcription initiation factor IIA gamma chain OS... [more]
B8AWX2_ORYSI2.141e-4688.68Putative uncharacterized protein OS=Oryza sativa s... [more]
B7EAK7_ORYSJ2.141e-4688.68Putative uncharacterized protein OS=Oryza sativa s... [more]
C5YY13_SORBI1.063e-4586.79Putative uncharacterized protein Sb09g000610 OS=So... [more]
B6SSE1_MAIZE3.092e-4584.91Putative uncharacterized protein OS=Zea mays PE=4 ... [more]
back to top
BLAST of Pisum_sativum_v1_Contig712 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide)
Total hits: 2
Match NameE-valueIdentityDescription
AT4G24440.21.556e-5090.57| Symbols: | transcription initiation factor IIA ... [more]
AT4G24440.11.556e-5090.57| Symbols: | transcription initiation factor IIA ... [more]
back to top
InterPro
Analysis Name: InterProScan analysis for Pisum sativum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003194Transcription initiation factor IIA, gamma subunitPIRPIRSF009415Transcription initiation factor IIA, gamma subunitcoord: 9..116
score: 1.3
IPR003194Transcription initiation factor IIA, gamma subunitPANTHERPTHR10966TRANSCRIPTION INITIATION FACTOR IIA (TFIIA), GAMMA CHAINcoord: 10..116
score: 4.9
IPR009083Transcription factor IIA, helicalSUPERFAMILY47396Transcription factor IIA (TFIIA), alpha-helical domaincoord: 14..64
score: 1.5
IPR009088Transcription factor IIA, beta-barrelGENE3D2.30.18.10no descriptioncoord: 65..114
score: 2.5
IPR009088Transcription factor IIA, beta-barrelSUPERFAMILY50784Transcription factor IIA (TFIIA), beta-barrel domaincoord: 62..112
score: 1.1
IPR015871Transcription initiation factor IIA, gamma subunit, C-terminalPFAMPF02751TFIIA_gamma_Ccoord: 62..111
score: 6.3
IPR015872Transcription initiation factor IIA, gamma subunit, N-terminalGENE3D1.10.287.190no descriptioncoord: 11..64
score: 4.9
IPR015872Transcription initiation factor IIA, gamma subunit, N-terminalPFAMPF02268TFIIA_gamma_Ncoord: 13..60
score: 5.6

Sequences
The following sequences are available for this feature:

contig sequence

>Pisum_sativum_v1_Contig712 ID=Pisum_sativum_v1_Contig712; Name=Pisum_sativum_v1_Contig712; organism=Pisum sativum; type=contig; length=689bp
CTTCCAAAGTCTCTAACGTCGCTTCCGATTCATCGTGTTAGGTAGAATGG
CGACGTTCGAACTTTACCGTAGGTCTACGATTGGAATGTGTCTCACCGAG
ACTTTGGATGAGATGGTTCAGAGTGGAACTCTTAGTCCTGAGCTTGCTAT
TCAGGTTCTGGTTCAGTTCGATAAGTCTATGACTGAGGCTCTGGAAACCA
AAGTTAAGAGCAAGGTTTCCATCAAGGGACATCTCCATACATACAGATTT
TGTGATAATGTTTGGACCTTCATCTTACAAGATGCTTTGTTGAAGAATGA
AGACAGCCAAGAGAATGTTGGACGGGTTAAAATAGTGGCATGTGACTCAA
AGTTGCTCAGTCAGTAAGATGCCCAAATTCTGTCAGTGTCATTATCTGCT
GGTACTACGAGAATGGTGGCTACAGCATAGTGTTGGATGGCCTTAATATT
TTGCATGAACTAGCATCTACACTATGTTATATTGTAGACTTATAAGGCCT
TCAATCTTCAAGTCATTAGATAATTGATGTTATATTAAGAATATATCATA
TGGAAATTGGATGATTCACTATCGTTTAAACTTGTTCATTCTATTTTTCC
ATGAGTCGGTAAATTAATGTATGGACTAAAAAGGTAGCCAATCCTTTTCC
TTTATTTATCTCCATAAAACTATAGTTCATTTTCTCAAA
back to top
Annotated Terms
The following terms have been associated with this contig:
Vocabulary: Molecular Function
TermDefinition
GO:0003702obsolete RNA polymerase II transcription factor activity
Vocabulary: Cellular Component
TermDefinition
GO:0005672transcription factor TFIIA complex
Vocabulary: Biological Process
TermDefinition
GO:0006367transcription initiation at RNA polymerase II promoter
Vocabulary: INTERPRO
TermDefinition
IPR003194TFIIA_gsu
IPR009083TFIIA_a-hlx
IPR009088TFIIA_b-brl
IPR015871TFIIA_gsu_C
IPR015872TFIIA_gsu_N