Pisum_sativum_v1_Contig718

Contig Overview
NamePisum_sativum_v1_Contig718
Unique NamePisum_sativum_v1_Contig718
Typecontig
OrganismPisum sativum (pea)
Sequence length639
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
FG531482ESTFG531482:117..537 +
FG534152ESTFG534152:1..639 +
Unigenes
This contig is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Pisum sativum unigene v1Pisum sativum unigene v1contig
Analyses
This contig is derived from or has results from the following analyses
Analysis NameDate Performed
Pisum sativum unigene v12010-12-27
Homology Analysis: Pisum sativum unigene v1 vs Trembl2010-12-28
Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide2011-02-03
InterProScan analysis for Pisum sativum unigene v12010-12-29
Relationships

The following EST feature(s) are a part of this contig:

Feature NameUnique NameSpeciesType
FG531482FG531482Pisum sativumEST
FG534152FG534152Pisum sativumEST


Homology
[Close]
BLAST of Pisum_sativum_v1_Contig718 vs. TrEMBL
Match: Q9LT13_ARATH (Gb|AAF01580.1 OS=Arabidopsis thaliana PE=4 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 3.035e-9
Identity = 32/50 (64.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:    1 STTVVIPYGHISEFIIIGSTGAEHLLRAENNSTDVSAARDTIVLTLRLFI 150
            STTV IP+G  +E +IIGS G+EH LRA+N S D+  +RD IVLTLRLFI
Sbjct:  281 STTVTIPFGQPAELVIIGSDGSEHSLRADNGSPDLIGSRDEIVLTLRLFI 330
[Close]
BLAST of Pisum_sativum_v1_Contig718 vs. TrEMBL
Match: D7M1D7_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_908814 PE=4 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 3.035e-9
Identity = 30/50 (60.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:    1 STTVVIPYGHISEFIIIGSTGAEHLLRAENNSTDVSAARDTIVLTLRLFI 150
            ST +VIP+   ++F+IIGS G EHL R  N++TD+S +RDTIVLTLRLF+
Sbjct:   68 STNIVIPFDQPADFVIIGSDGVEHLCRVGNDATDLSCSRDTIVLTLRLFL 117
[Close]
BLAST of Pisum_sativum_v1_Contig718 vs. TrEMBL
Match: D7M1C4_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_325441 PE=4 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 3.035e-9
Identity = 30/50 (60.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:    1 STTVVIPYGHISEFIIIGSTGAEHLLRAENNSTDVSAARDTIVLTLRLFI 150
            ST +VIP+   ++F+IIGS G EHL R  N++TD+S +RDTIVLTLRLF+
Sbjct:  657 STNIVIPFDQPADFVIIGSDGVEHLCRVGNDATDLSCSRDTIVLTLRLFL 706
[Close]
BLAST of Pisum_sativum_v1_Contig718 vs. TrEMBL
Match: D7M2A3_ARALY (Predicted protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_662164 PE=4 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 1.153e-8
Identity = 32/50 (64.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:    1 STTVVIPYGHISEFIIIGSTGAEHLLRAENNSTDVSAARDTIVLTLRLFI 150
            ST V IP+G  +E +IIGS G+EH LRAEN  TD+  +RD IVLTLRLFI
Sbjct:  187 STAVKIPFGKPAELVIIGSDGSEHSLRAENGLTDLIGSRDEIVLTLRLFI 236
[Close]
BLAST of Pisum_sativum_v1_Contig718 vs. TrEMBL
Match: D7M2A2_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_489211 PE=4 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 1.153e-8
Identity = 31/50 (62.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:    1 STTVVIPYGHISEFIIIGSTGAEHLLRAENNSTDVSAARDTIVLTLRLFI 150
            ST V IP+G  +E +IIGS G+EH LRA+N S D+  +RD IVLTLRLFI
Sbjct:  659 STAVTIPFGQPAELVIIGSDGSEHSLRADNGSPDLIGSRDEIVLTLRLFI 708
[Close]
BLAST of Pisum_sativum_v1_Contig718 vs. TrEMBL
Match: D7TB49_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_130.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00000268001 PE=4 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 3.355e-8
Identity = 31/50 (62.00%), Postives = 36/50 (72.00%), Query Frame = 1 
Query:    1 STTVVIPYGHISEFIIIGSTGAEHLLRAENNSTDVSAARDTIVLTLRLFI 150
            +T V IPYGH  EF++IGS   +H LR EN STDVS +RD IVL LR FI
Sbjct:  683 ATNVSIPYGHPEEFLVIGSGRLQHHLRVENISTDVSCSRDAIVLILRCFI 732
[Close]
BLAST of Pisum_sativum_v1_Contig718 vs. TAIR peptide
Match: AT5G23490.1 (| Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G08440.1); Has 202 Blast hits to 197 proteins in 48 species: Archae - 0; Bacteria - 13; Metazoa - 25; Fungi - 9; Plants - 109; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink). | chr5:7919831-7926499 FORWARD LENGTH=729)

HSP 1 Score: 65.855 bits (159), Expect = 2.160e-11
Identity = 32/50 (64.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:    1 STTVVIPYGHISEFIIIGSTGAEHLLRAENNSTDVSAARDTIVLTLRLFI 150
            STTV IP+G  +E +IIGS G+EH LRA+N S D+  +RD IVLTLRLFI
Sbjct:  662 STTVTIPFGQPAELVIIGSDGSEHSLRADNGSPDLIGSRDEIVLTLRLFI 711
[Close]
BLAST of Pisum_sativum_v1_Contig718 vs. TAIR peptide
Match: AT5G08440.2 (| Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23490.1). | chr5:2721037-2726970 FORWARD LENGTH=772)

HSP 1 Score: 61.2326 bits (147), Expect = 5.319e-10
Identity = 29/51 (56.86%), Postives = 41/51 (80.39%), Query Frame = 1 
Query:    1 STTVVIPYGHISEFIIIGSTGAEHLLR-AENNSTDVSAARDTIVLTLRLFI 150
            ST +VIP+   ++F+IIG+ G EHL R  +N++TD+S +RDTIVLTLRLF+
Sbjct:  704 STNIVIPFDQPADFVIIGTDGEEHLCRVVDNDATDLSCSRDTIVLTLRLFL 754
[Close]
BLAST of Pisum_sativum_v1_Contig718 vs. TAIR peptide
Match: AT5G08440.1 (| Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23490.1); Has 141 Blast hits to 139 proteins in 35 species: Archae - 0; Bacteria - 9; Metazoa - 21; Fungi - 6; Plants - 94; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). | chr5:2721037-2726970 FORWARD LENGTH=726)

HSP 1 Score: 61.2326 bits (147), Expect = 5.319e-10
Identity = 29/51 (56.86%), Postives = 41/51 (80.39%), Query Frame = 1 
Query:    1 STTVVIPYGHISEFIIIGSTGAEHLLR-AENNSTDVSAARDTIVLTLRLFI 150
            ST +VIP+   ++F+IIG+ G EHL R  +N++TD+S +RDTIVLTLRLF+
Sbjct:  658 STNIVIPFDQPADFVIIGTDGEEHLCRVVDNDATDLSCSRDTIVLTLRLFL 708
[Close]
BLAST of Pisum_sativum_v1_Contig718 vs. TAIR peptide
Match: AT5G23510.2 (| Symbols: | unknown protein; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23490.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:7927055-7929117 FORWARD LENGTH=306)

HSP 1 Score: 51.9878 bits (123), Expect = 3.227e-7
Identity = 28/50 (56.00%), Postives = 35/50 (70.00%), Query Frame = 1 
Query:    1 STTVVIPYGHISEFIIIGSTGAEHLLRAENNSTDVSAARDTIVLTLRLFI 150
            ST V IP+   +E +IIGS G+EH LR +N   D+S +RD IVLTLR FI
Sbjct:  238 STAVKIPFEKPAELVIIGSDGSEHCLRVDNEWPDIS-SRDEIVLTLRSFI 286
[Close]
BLAST of Pisum_sativum_v1_Contig718 vs. TAIR peptide
Match: AT5G23510.1 (| Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23490.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr5:7927266-7929016 FORWARD LENGTH=271)

HSP 1 Score: 51.9878 bits (123), Expect = 3.227e-7
Identity = 28/50 (56.00%), Postives = 35/50 (70.00%), Query Frame = 1 
Query:    1 STTVVIPYGHISEFIIIGSTGAEHLLRAENNSTDVSAARDTIVLTLRLFI 150
            ST V IP+   +E +IIGS G+EH LR +N   D+S +RD IVLTLR FI
Sbjct:  199 STAVKIPFEKPAELVIIGSDGSEHCLRVDNEWPDIS-SRDEIVLTLRSFI 247
The following BLAST results are available for this feature:
BLAST of Pisum_sativum_v1_Contig718 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl)
Total hits: 6
Match NameE-valueIdentityDescription
Q9LT13_ARATH3.035e-964.00Gb|AAF01580.1 OS=Arabidopsis thaliana PE=4 SV=1[more]
D7M1D7_ARALY3.035e-960.00Putative uncharacterized protein OS=Arabidopsis ly... [more]
D7M1C4_ARALY3.035e-960.00Putative uncharacterized protein OS=Arabidopsis ly... [more]
D7M2A3_ARALY1.153e-864.00Predicted protein OS=Arabidopsis lyrata subsp. lyr... [more]
D7M2A2_ARALY1.153e-862.00Putative uncharacterized protein OS=Arabidopsis ly... [more]
D7TB49_VITVI3.355e-862.00Whole genome shotgun sequence of line PN40024, sca... [more]
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BLAST of Pisum_sativum_v1_Contig718 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide)
Total hits: 5
Match NameE-valueIdentityDescription
AT5G23490.12.160e-1164.00| Symbols: | unknown protein; BEST Arabidopsis th... [more]
AT5G08440.25.319e-1056.86| Symbols: | unknown protein; FUNCTIONS IN: molec... [more]
AT5G08440.15.319e-1056.86| Symbols: | unknown protein; FUNCTIONS IN: molec... [more]
AT5G23510.23.227e-756.00| Symbols: | unknown protein; LOCATED IN: cellula... [more]
AT5G23510.13.227e-756.00| Symbols: | unknown protein; BEST Arabidopsis th... [more]
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InterPro
Analysis Name: InterProScan analysis for Pisum sativum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 51..63
score
NoneNo IPR availableSEGsegsegcoord: 5..16
score
NoneNo IPR availableSEGsegsegcoord: 36..55
score

Sequences
The following sequences are available for this feature:

contig sequence

>Pisum_sativum_v1_Contig718 ID=Pisum_sativum_v1_Contig718; Name=Pisum_sativum_v1_Contig718; organism=Pisum sativum; type=contig; length=639bp
TCGACAACCGTTGTAATTCCATATGGTCATATTTCAGAATTTATTATAAT
TGGCTCCACTGGTGCGGAACATCTGTTAAGAGCAGAGAACAACTCAACAG
ATGTCAGTGCTGCTAGAGACACCATTGTGCTCACATTGAGATTATTTATC
CGAAGGGCAGGGGACAGAAAGAGGGGGAGGAGGAAGGGATTGTTCTTTAA
CAAGTAAGGGAAAATCGGTTCTACTTGGCAGAAAATCTCTGCTGCAAGTG
AAATGTGTTGATCATAGATGGGGCTGGGAGCTGTGTTTTGTGTGCTACAT
AAATTTTTGCTAGTTTCTTATTTTATCATAGGGCAGAATTAGCTTGAGCT
GTAACTGTGATTCTATATGCCATCATTTCTTTTAAATTTTTTTATATTCT
TTTTAGCCATTTTCCGTGTTGTGCTACTTAACCTGGAAATTACCTGCTTA
TTGGTTTGGGTCAAAACACCATCCAATCTGTGAAGAACCGACTCAGGTAA
TAACTACTCTTTTTAGTACAGATTGTCTGTCTCAGGCAAGTTTTGAATGT
GCGAATCATGTTGCTATAACATTCAAAATATTGTTTTTGAATAACAAGTA
ATGAGTAATTATTTATATGGTCAAATGTTAGTGGTTTGG
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