Pisum_sativum_v1_Contig854

Contig Overview


Name	Pisum_sativum_v1_Contig854
Unique Name	Pisum_sativum_v1_Contig854
Type	contig
Organism	Pisum sativum (pea)
Sequence length	598

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
GH720522	EST	GH720522:112..555 +
FG528703	EST	FG528703:1..598 -

Unigenes

This contig is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Pisum sativum unigene v1	Pisum sativum unigene v1	contig

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Pisum sativum unigene v1	2010-12-27
Homology Analysis: Pisum sativum unigene v1 vs Trembl	2010-12-28
Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide	2011-02-03
InterProScan analysis for Pisum sativum unigene v1	2010-12-29

Relationships

The following EST feature(s) are a part of this contig:


Feature Name	Unique Name	Species	Type
GH720522	GH720522	Pisum sativum	EST
FG528703	FG528703	Pisum sativum	EST

Homology

[Close]

BLAST of Pisum_sativum_v1_Contig854 vs. TrEMBL
Match: B9SP38_RICCO (Importin-7, putative OS=Ricinus communis GN=RCOM_0617240 PE=4 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.228e-19
Identity = 47/58 (81.03%), Postives = 56/58 (96.55%), Query Frame = -2

Query:  424 LQSPIDEMDPFIFFVDTMKVVQLSDPLRFESLTQSLEFNYQALANGVAQHAEQRRLEI 597
            LQSPIDE+DPFIFFVDT+KV+Q SDPLRF++LTQ+L+F++QALANGVAQHAEQRR EI
Sbjct:  961 LQSPIDEVDPFIFFVDTIKVMQASDPLRFQNLTQALDFHHQALANGVAQHAEQRRAEI 1018

[Close]

BLAST of Pisum_sativum_v1_Contig854 vs. TrEMBL
Match: D7U9N5_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_62.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00031670001 PE=4 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.736e-19
Identity = 46/58 (79.31%), Postives = 55/58 (94.83%), Query Frame = -2

Query:  424 LQSPIDEMDPFIFFVDTMKVVQLSDPLRFESLTQSLEFNYQALANGVAQHAEQRRLEI 597
            LQSPIDE+DPFIFFVDT+K +Q SDPLR ++LTQ+L+F+YQALANGVAQHAEQRR+EI
Sbjct: 1009 LQSPIDEVDPFIFFVDTVKAMQASDPLRLQNLTQTLDFHYQALANGVAQHAEQRRVEI 1066

[Close]

BLAST of Pisum_sativum_v1_Contig854 vs. TrEMBL
Match: Q7XTA3_ORYSJ (OSJNBa0008A08.7 protein OS=Oryza sativa subsp. japonica GN=OSJNBa0008A08.7 PE=4 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 4.368e-17
Identity = 42/58 (72.41%), Postives = 53/58 (91.38%), Query Frame = -2

Query:  424 LQSPIDEMDPFIFFVDTMKVVQLSDPLRFESLTQSLEFNYQALANGVAQHAEQRRLEI 597
            LQSPIDE+DPFIFFVDT++ +Q SDP RF+SL Q+L+F YQALANG+AQHAE+R++EI
Sbjct:  200 LQSPIDEVDPFIFFVDTIQGMQASDPARFQSLMQTLDFRYQALANGLAQHAEERKVEI 257

[Close]

BLAST of Pisum_sativum_v1_Contig854 vs. TrEMBL
Match: Q01KY9_ORYSA (OSIGBa0137O04.8 protein OS=Oryza sativa GN=OSIGBa0137O04.8 PE=4 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.368e-17
Identity = 42/58 (72.41%), Postives = 53/58 (91.38%), Query Frame = -2

Query:  424 LQSPIDEMDPFIFFVDTMKVVQLSDPLRFESLTQSLEFNYQALANGVAQHAEQRRLEI 597
            LQSPIDE+DPFIFFVDT++ +Q SDP RF+SL Q+L+F YQALANG+AQHAE+R++EI
Sbjct:  961 LQSPIDEVDPFIFFVDTIQGMQASDPARFQSLMQTLDFRYQALANGLAQHAEERKVEI 1018

[Close]

BLAST of Pisum_sativum_v1_Contig854 vs. TrEMBL
Match: B9FEH2_ORYSJ (Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_14311 PE=4 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.368e-17
Identity = 42/58 (72.41%), Postives = 53/58 (91.38%), Query Frame = -2

Query:  424 LQSPIDEMDPFIFFVDTMKVVQLSDPLRFESLTQSLEFNYQALANGVAQHAEQRRLEI 597
            LQSPIDE+DPFIFFVDT++ +Q SDP RF+SL Q+L+F YQALANG+AQHAE+R++EI
Sbjct:  962 LQSPIDEVDPFIFFVDTIQGMQASDPARFQSLMQTLDFRYQALANGLAQHAEERKVEI 1019

[Close]

BLAST of Pisum_sativum_v1_Contig854 vs. TrEMBL
Match: B8ASB1_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_15383 PE=4 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.368e-17
Identity = 42/58 (72.41%), Postives = 53/58 (91.38%), Query Frame = -2

Query:  424 LQSPIDEMDPFIFFVDTMKVVQLSDPLRFESLTQSLEFNYQALANGVAQHAEQRRLEI 597
            LQSPIDE+DPFIFFVDT++ +Q SDP RF+SL Q+L+F YQALANG+AQHAE+R++EI
Sbjct:  961 LQSPIDEVDPFIFFVDTIQGMQASDPARFQSLMQTLDFRYQALANGLAQHAEERKVEI 1018

[Close]

BLAST of Pisum_sativum_v1_Contig854 vs. TrEMBL
Match: Q6K6G8_ORYSJ (Os02g0474700 protein OS=Oryza sativa subsp. japonica GN=P0487H05.39 PE=4 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.831e-16
Identity = 40/58 (68.97%), Postives = 53/58 (91.38%), Query Frame = -2

Query:  424 LQSPIDEMDPFIFFVDTMKVVQLSDPLRFESLTQSLEFNYQALANGVAQHAEQRRLEI 597
            LQSPIDE+DPFI FV+T++ +Q SDP+RF+SL Q+L+F YQALA+G+AQHAE+RR+EI
Sbjct:  607 LQSPIDEVDPFILFVETVQGLQASDPIRFQSLMQTLDFRYQALASGIAQHAEERRVEI 664

[Close]

BLAST of Pisum_sativum_v1_Contig854 vs. TrEMBL
Match: B9EZZ2_ORYSJ (Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_06714 PE=4 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.831e-16
Identity = 40/58 (68.97%), Postives = 53/58 (91.38%), Query Frame = -2

Query:  424 LQSPIDEMDPFIFFVDTMKVVQLSDPLRFESLTQSLEFNYQALANGVAQHAEQRRLEI 597
            LQSPIDE+DPFI FV+T++ +Q SDP+RF+SL Q+L+F YQALA+G+AQHAE+RR+EI
Sbjct:  962 LQSPIDEVDPFILFVETVQGLQASDPIRFQSLMQTLDFRYQALASGIAQHAEERRVEI 1019

[Close]

BLAST of Pisum_sativum_v1_Contig854 vs. TrEMBL
Match: B8AHZ2_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_07188 PE=4 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.831e-16
Identity = 40/58 (68.97%), Postives = 53/58 (91.38%), Query Frame = -2

Query:  424 LQSPIDEMDPFIFFVDTMKVVQLSDPLRFESLTQSLEFNYQALANGVAQHAEQRRLEI 597
            LQSPIDE+DPFI FV+T++ +Q SDP+RF+SL Q+L+F YQALA+G+AQHAE+RR+EI
Sbjct:  962 LQSPIDEVDPFILFVETVQGLQASDPIRFQSLMQTLDFRYQALASGIAQHAEERRVEI 1019

[Close]

BLAST of Pisum_sativum_v1_Contig854 vs. TrEMBL
Match: B4FFP7_MAIZE (Putative uncharacterized protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.076e-15
Identity = 38/58 (65.52%), Postives = 51/58 (87.93%), Query Frame = -2

Query:  424 LQSPIDEMDPFIFFVDTMKVVQLSDPLRFESLTQSLEFNYQALANGVAQHAEQRRLEI 597
            L SPIDE+DPFIFFV+T++ +Q SDP RF++L Q+L+F YQALA+G+ QHAEQR++EI
Sbjct:  138 LHSPIDEVDPFIFFVETVQALQASDPARFQNLMQTLDFRYQALASGIGQHAEQRKIEI 195

[Close]

BLAST of Pisum_sativum_v1_Contig854 vs. TAIR peptide
Match: AT2G31660.1 (| Symbols: SAD2, URM9 | ARM repeat superfamily protein | chr2:13464519-13471353 FORWARD LENGTH=1040)

HSP 1 Score: 84.3445 bits (207), Expect = 5.232e-17
Identity = 38/57 (66.67%), Postives = 49/57 (85.96%), Query Frame = -2

Query:  424 QSPIDEMDPFIFFVDTMKVVQLSDPLRFESLTQSLEFNYQALANGVAQHAEQRRLEI 594
            QSPIDE+D F+FFVD ++V+Q SD  RF++L QSL+F YQA+ANG+AQHAE RR+EI
Sbjct:  966 QSPIDEVDAFVFFVDAIRVMQASDAQRFQNLNQSLDFTYQAIANGIAQHAELRRVEI 1022

[Close]

BLAST of Pisum_sativum_v1_Contig854 vs. TAIR peptide
Match: AT3G59020.2 (| Symbols: | ARM repeat superfamily protein | chr3:21810973-21817418 REVERSE LENGTH=1030)

HSP 1 Score: 70.4774 bits (171), Expect = 7.819e-13
Identity = 32/58 (55.17%), Postives = 45/58 (77.59%), Query Frame = -2

Query:  424 LQSPIDEMDPFIFFVDTMKVVQLSDPLRFESLTQSLEFNYQALANGVAQHAEQRRLEI 597
            L+SPIDE+DPF+ F+D +  +Q+SD  RF+SLTQ+L+ +Y  LA+ +AQH E RR EI
Sbjct:  958 LESPIDEVDPFVLFMDAVTAMQVSDSPRFQSLTQTLDPHYHGLASTIAQHTELRRAEI 1015

[Close]

BLAST of Pisum_sativum_v1_Contig854 vs. TAIR peptide
Match: AT3G59020.1 (| Symbols: | ARM repeat superfamily protein | chr3:21810973-21817418 REVERSE LENGTH=1029)

HSP 1 Score: 70.4774 bits (171), Expect = 7.819e-13
Identity = 32/58 (55.17%), Postives = 45/58 (77.59%), Query Frame = -2

Query:  424 LQSPIDEMDPFIFFVDTMKVVQLSDPLRFESLTQSLEFNYQALANGVAQHAEQRRLEI 597
            L+SPIDE+DPF+ F+D +  +Q+SD  RF+SLTQ+L+ +Y  LA+ +AQH E RR EI
Sbjct:  957 LESPIDEVDPFVLFMDAVTAMQVSDSPRFQSLTQTLDPHYHGLASTIAQHTELRRAEI 1014

The following BLAST results are available for this feature:

BLAST of Pisum_sativum_v1_Contig854 vs. TrEMBL
BLAST of Pisum_sativum_v1_Contig854 vs. TAIR peptide

BLAST of Pisum_sativum_v1_Contig854 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
B9SP38_RICCO	1.228e-19	81.03	Importin-7, putative OS=Ricinus communis GN=RCOM_0...	[more]
D7U9N5_VITVI	2.736e-19	79.31	Whole genome shotgun sequence of line PN40024, sca...	[more]
Q7XTA3_ORYSJ	4.368e-17	72.41	OSJNBa0008A08.7 protein OS=Oryza sativa subsp. jap...	[more]
Q01KY9_ORYSA	4.368e-17	72.41	OSIGBa0137O04.8 protein OS=Oryza sativa GN=OSIGBa0...	[more]
B9FEH2_ORYSJ	4.368e-17	72.41	Putative uncharacterized protein OS=Oryza sativa s...	[more]
B8ASB1_ORYSI	4.368e-17	72.41	Putative uncharacterized protein OS=Oryza sativa s...	[more]
Q6K6G8_ORYSJ	2.831e-16	68.97	Os02g0474700 protein OS=Oryza sativa subsp. japoni...	[more]
B9EZZ2_ORYSJ	2.831e-16	68.97	Putative uncharacterized protein OS=Oryza sativa s...	[more]
B8AHZ2_ORYSI	2.831e-16	68.97	Putative uncharacterized protein OS=Oryza sativa s...	[more]
B4FFP7_MAIZE	1.076e-15	65.52	Putative uncharacterized protein OS=Zea mays PE=2 ...	[more]

BLAST of Pisum_sativum_v1_Contig854 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide)
Total hits: 3


Match Name	E-value	Identity	Description
AT2G31660.1	5.232e-17	66.67	\| Symbols: SAD2, URM9 \| ARM repeat superfamily pro...	[more]
AT3G59020.2	7.819e-13	55.17	\| Symbols: \| ARM repeat superfamily protein \| chr...	[more]
AT3G59020.1	7.819e-13	55.17	\| Symbols: \| ARM repeat superfamily protein \| chr...	[more]

InterPro

Analysis Name: InterProScan analysis for Pisum sativum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SEG	seg	seg	coord: 57..71 score

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>Pisum_sativum_v1_Contig854 ID=Pisum_sativum_v1_Contig854; Name=Pisum_sativum_v1_Contig854; organism=Pisum sativum; type=contig; length=598bp
AAAAACAAAACTTTTTATACCATCCCTCATCAAAAAATACCAATAAAGCA
AATGGCAACCCTACGTACCCACCCGTCTATGTGACAGGTAATAAATATTA
CAGAACCGTATCATCGAAACAAAATAGGCTGGTACATGGAGAGACTAAGA
GGACACTTTCTTCCAAAGGATATTCCCAAGCTTTGAATCAAAAGCTGAAC
TAAGGCCTGGAGAAAGTGCCAATAGATAACTTCAAAACTGCAAACTCTTC
AAAAACTGACTCGTGATCAAAGCCAACAAACGCCTCAAATAAATTGGCAA
CCCGCTGAGACTCCTAAAGAATGGCCAACGGCTGAGAACTTTAGAAAAAA
CCAACAGTATTAATGTATACCCAGAAGCTTAAGAAGCTGTTGCAGCTGAT
GCCTTCTCTAATTTTTCCTTTTCGATTTCTAACCTTCTCTGCTCGGCATG
CTGGGCAACACCATTAGCAAGAGCTTGATAATTGAACTCAAGTGACTGGG
TGAGACTCTCAAACCTCAATGGGTCTGATAATTGTACAACTTTCATCGTA
TCCACAAAGAAAATAAAAGGATCCATCTCATCAATTGGGGACTGCAAA

Search form

Pisum_sativum_v1_Contig854