Pisum_sativum_v1_Contig859

Contig Overview
NamePisum_sativum_v1_Contig859
Unique NamePisum_sativum_v1_Contig859
Typecontig
OrganismPisum sativum (pea)
Sequence length501
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
FG538959ESTFG538959:1..492 +Pisum sativum unigene v1n/a
FG534992ESTFG534992:200..501 +Pisum sativum unigene v1n/a
Unigenes
This contig is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Pisum sativum unigene v1Pisum sativum unigene v1contig
Analyses
This contig is derived from or has results from the following analyses
Analysis NameDate Performed
Pisum sativum unigene v12010-12-27
Homology Analysis: Pisum sativum unigene v1 vs Trembl2010-12-28
Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide2011-02-03
InterProScan analysis for Pisum sativum unigene v12010-12-29
Relationships

The following EST feature(s) are a part of this contig:

Feature NameUnique NameSpeciesType
FG538959FG538959Pisum sativumEST
FG534992FG534992Pisum sativumEST


Homology
[Close]
BLAST of Pisum_sativum_v1_Contig859 vs. TrEMBL
Match: B9RBS9_RICCO (Immature colon carcinoma transcript, putative OS=Ricinus communis GN=RCOM_1680630 PE=4 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.718e-32
Identity = 72/81 (88.89%), Postives = 76/81 (93.83%), Query Frame = 2 
Query:    2 NKDGELVITSTKTRTQKGNIDDALAKLQEIIDAASYVPPPPSEEQKKKIAKLAAIGEHKRLKSKKVQSDKKAQRRSKSSWD 244
            NKDGE+VI+STKTRTQKGNI+DALAKLQ IIDAASYVPPPPSEEQKKKIAKLAAIGE KRLKSKKV SDKKA RRS+ SWD
Sbjct:  154 NKDGEIVISSTKTRTQKGNIEDALAKLQAIIDAASYVPPPPSEEQKKKIAKLAAIGEQKRLKSKKVLSDKKAFRRSRISWD 234
[Close]
BLAST of Pisum_sativum_v1_Contig859 vs. TrEMBL
Match: B9GVS7_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_646490 PE=4 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 2.931e-32
Identity = 71/81 (87.65%), Postives = 74/81 (91.36%), Query Frame = 2 
Query:    2 NKDGELVITSTKTRTQKGNIDDALAKLQEIIDAASYVPPPPSEEQKKKIAKLAAIGEHKRLKSKKVQSDKKAQRRSKSSWD 244
            NKDGE+VI+STKTRTQKGNIDDALAKLQ IID ASYVPPPPSEEQKKKIAKLAAIGE KRLKSKK  SDKKA RRS+ SWD
Sbjct:  149 NKDGEIVISSTKTRTQKGNIDDALAKLQAIIDVASYVPPPPSEEQKKKIAKLAAIGEQKRLKSKKALSDKKAFRRSRDSWD 229
[Close]
BLAST of Pisum_sativum_v1_Contig859 vs. TrEMBL
Match: B9N3M2_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_671184 PE=4 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 4.232e-31
Identity = 68/81 (83.95%), Postives = 74/81 (91.36%), Query Frame = 2 
Query:    2 NKDGELVITSTKTRTQKGNIDDALAKLQEIIDAASYVPPPPSEEQKKKIAKLAAIGEHKRLKSKKVQSDKKAQRRSKSSWD 244
            NKDGE+VI+STKTRTQ GNIDDAL KLQ +IDAASYVPPPPSEEQKKKIAKLA+IGE KRL+SKKV SDKKA RRS+ SWD
Sbjct:  146 NKDGEIVISSTKTRTQTGNIDDALEKLQAVIDAASYVPPPPSEEQKKKIAKLASIGEQKRLRSKKVLSDKKAFRRSRDSWD 226
[Close]
BLAST of Pisum_sativum_v1_Contig859 vs. TrEMBL
Match: D7SX50_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_241.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00004909001 PE=4 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 9.428e-31
Identity = 68/81 (83.95%), Postives = 74/81 (91.36%), Query Frame = 2 
Query:    2 NKDGELVITSTKTRTQKGNIDDALAKLQEIIDAASYVPPPPSEEQKKKIAKLAAIGEHKRLKSKKVQSDKKAQRRSKSSWD 244
            NKDGE+VI+STKTRTQKGNI+DAL KLQ IIDAASYVPPPPSEEQKKKIAKLAAIGE KRL++KKV S KKA RRS+ SWD
Sbjct:  150 NKDGEIVISSTKTRTQKGNIEDALGKLQAIIDAASYVPPPPSEEQKKKIAKLAAIGEQKRLQNKKVLSQKKAFRRSRDSWD 230
[Close]
BLAST of Pisum_sativum_v1_Contig859 vs. TrEMBL
Match: Q84JF2_ARATH (Putative uncharacterized protein At1g62855 OS=Arabidopsis thaliana GN=At1g62855 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.778e-29
Identity = 67/81 (82.72%), Postives = 73/81 (90.12%), Query Frame = 2 
Query:    2 NKDGELVITSTKTRTQKGNIDDALAKLQEIIDAASYVPPPPSEEQKKKIAKLAAIGEHKRLKSKKVQSDKKAQRRSKSSWD 244
            NKDGELVI+STKTRTQKGNIDDAL KLQ IIDAASYVPPPPSEEQKKKI KLAA  ++KRLKSKKV SDKK+ RRS+ S+D
Sbjct:  155 NKDGELVISSTKTRTQKGNIDDALEKLQAIIDAASYVPPPPSEEQKKKIVKLAAKADNKRLKSKKVLSDKKSARRSRGSYD 235
[Close]
BLAST of Pisum_sativum_v1_Contig859 vs. TrEMBL
Match: D7KU65_ARALY (Translation release factor OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_475068 PE=4 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.966e-28
Identity = 65/81 (80.25%), Postives = 72/81 (88.89%), Query Frame = 2 
Query:    2 NKDGELVITSTKTRTQKGNIDDALAKLQEIIDAASYVPPPPSEEQKKKIAKLAAIGEHKRLKSKKVQSDKKAQRRSKSSWD 244
            NKDGELVI+STKTRTQKGNIDDAL KLQ II+AASYVPPPPSEEQKKKI KLA   ++KRLKSKKV SDKK+ RRS+ S+D
Sbjct:  155 NKDGELVISSTKTRTQKGNIDDALEKLQAIINAASYVPPPPSEEQKKKIVKLAEKADNKRLKSKKVLSDKKSSRRSRGSYD 235
[Close]
BLAST of Pisum_sativum_v1_Contig859 vs. TrEMBL
Match: Q10P29_ORYSJ (Immature colon carcinoma transcript 1 protein, putative, expressed OS=Oryza sativa subsp. japonica GN=Os03g0249200 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.664e-27
Identity = 61/81 (75.31%), Postives = 70/81 (86.42%), Query Frame = 2 
Query:    2 NKDGELVITSTKTRTQKGNIDDALAKLQEIIDAASYVPPPPSEEQKKKIAKLAAIGEHKRLKSKKVQSDKKAQRRSKSSWD 244
            NKDGELVI+STKTRTQKGNI+DAL K+Q IIDAASYVPPPPSEEQKKK+ K+AA  E KRL+ KKV S KK  RR+++SWD
Sbjct:  147 NKDGELVISSTKTRTQKGNIEDALQKIQAIIDAASYVPPPPSEEQKKKVEKIAAAAERKRLQKKKVLSQKKEFRRNRTSWD 227
[Close]
BLAST of Pisum_sativum_v1_Contig859 vs. TrEMBL
Match: B6T5I9_MAIZE (Immature colon carcinoma transcript 1 protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.664e-27
Identity = 60/81 (74.07%), Postives = 72/81 (88.89%), Query Frame = 2 
Query:    2 NKDGELVITSTKTRTQKGNIDDALAKLQEIIDAASYVPPPPSEEQKKKIAKLAAIGEHKRLKSKKVQSDKKAQRRSKSSWD 244
            NKDGELVI+STKTRTQKGNI+DAL K+Q IIDAASYVPPPP+E+QKKKI K+AA+ E KRL++KKV S KK  RR+++SWD
Sbjct:  147 NKDGELVISSTKTRTQKGNIEDALQKIQAIIDAASYVPPPPTEDQKKKIEKIAAVAERKRLQNKKVLSQKKEFRRNRTSWD 227
[Close]
BLAST of Pisum_sativum_v1_Contig859 vs. TrEMBL
Match: A3AG35_ORYSJ (Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_10143 PE=4 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.664e-27
Identity = 61/81 (75.31%), Postives = 70/81 (86.42%), Query Frame = 2 
Query:    2 NKDGELVITSTKTRTQKGNIDDALAKLQEIIDAASYVPPPPSEEQKKKIAKLAAIGEHKRLKSKKVQSDKKAQRRSKSSWD 244
            NKDGELVI+STKTRTQKGNI+DAL K+Q IIDAASYVPPPPSEEQKKK+ K+AA  E KRL+ KKV S KK  RR+++SWD
Sbjct:  143 NKDGELVISSTKTRTQKGNIEDALQKIQAIIDAASYVPPPPSEEQKKKVEKIAAAAERKRLQKKKVLSQKKEFRRNRTSWD 223
[Close]
BLAST of Pisum_sativum_v1_Contig859 vs. TrEMBL
Match: A2XEK2_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_10760 PE=4 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.664e-27
Identity = 61/81 (75.31%), Postives = 70/81 (86.42%), Query Frame = 2 
Query:    2 NKDGELVITSTKTRTQKGNIDDALAKLQEIIDAASYVPPPPSEEQKKKIAKLAAIGEHKRLKSKKVQSDKKAQRRSKSSWD 244
            NKDGELVI+STKTRTQKGNI+DAL K+Q IIDAASYVPPPPSEEQKKK+ K+AA  E KRL+ KKV S KK  RR+++SWD
Sbjct:  143 NKDGELVISSTKTRTQKGNIEDALQKIQAIIDAASYVPPPPSEEQKKKVEKIAAAAERKRLQKKKVLSQKKEFRRNRTSWD 223
[Close]
BLAST of Pisum_sativum_v1_Contig859 vs. TAIR peptide
Match: AT1G62850.3 (| Symbols: | Class I peptide chain release factor | chr1:23272608-23274211 REVERSE LENGTH=236)

HSP 1 Score: 132.109 bits (331), Expect = 1.546e-31
Identity = 67/81 (82.72%), Postives = 73/81 (90.12%), Query Frame = 2 
Query:    2 NKDGELVITSTKTRTQKGNIDDALAKLQEIIDAASYVPPPPSEEQKKKIAKLAAIGEHKRLKSKKVQSDKKAQRRSKSSWD 244
            NKDGELVI+STKTRTQKGNIDDAL KLQ IIDAASYVPPPPSEEQKKKI KLAA  ++KRLKSKKV SDKK+ RRS+ S+D
Sbjct:  155 NKDGELVISSTKTRTQKGNIDDALEKLQAIIDAASYVPPPPSEEQKKKIVKLAAKADNKRLKSKKVLSDKKSARRSRGSYD 235
[Close]
BLAST of Pisum_sativum_v1_Contig859 vs. TAIR peptide
Match: AT1G62850.2 (| Symbols: | Class I peptide chain release factor | chr1:23272608-23274211 REVERSE LENGTH=236)

HSP 1 Score: 132.109 bits (331), Expect = 1.546e-31
Identity = 67/81 (82.72%), Postives = 73/81 (90.12%), Query Frame = 2 
Query:    2 NKDGELVITSTKTRTQKGNIDDALAKLQEIIDAASYVPPPPSEEQKKKIAKLAAIGEHKRLKSKKVQSDKKAQRRSKSSWD 244
            NKDGELVI+STKTRTQKGNIDDAL KLQ IIDAASYVPPPPSEEQKKKI KLAA  ++KRLKSKKV SDKK+ RRS+ S+D
Sbjct:  155 NKDGELVISSTKTRTQKGNIDDALEKLQAIIDAASYVPPPPSEEQKKKIVKLAAKADNKRLKSKKVLSDKKSARRSRGSYD 235
The following BLAST results are available for this feature:
BLAST of Pisum_sativum_v1_Contig859 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
B9RBS9_RICCO1.718e-3288.89Immature colon carcinoma transcript, putative OS=R... [more]
B9GVS7_POPTR2.931e-3287.65Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
B9N3M2_POPTR4.232e-3183.95Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
D7SX50_VITVI9.428e-3183.95Whole genome shotgun sequence of line PN40024, sca... [more]
Q84JF2_ARATH1.778e-2982.72Putative uncharacterized protein At1g62855 OS=Arab... [more]
D7KU65_ARALY1.966e-2880.25Translation release factor OS=Arabidopsis lyrata s... [more]
Q10P29_ORYSJ1.664e-2775.31Immature colon carcinoma transcript 1 protein, put... [more]
B6T5I9_MAIZE1.664e-2774.07Immature colon carcinoma transcript 1 protein OS=Z... [more]
A3AG35_ORYSJ1.664e-2775.31Putative uncharacterized protein OS=Oryza sativa s... [more]
A2XEK2_ORYSI1.664e-2775.31Putative uncharacterized protein OS=Oryza sativa s... [more]
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BLAST of Pisum_sativum_v1_Contig859 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide)
Total hits: 2
Match NameE-valueIdentityDescription
AT1G62850.31.546e-3182.72| Symbols: | Class I peptide chain release factor... [more]
AT1G62850.21.546e-3182.72| Symbols: | Class I peptide chain release factor... [more]
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InterPro
Analysis Name: InterProScan analysis for Pisum sativum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000352Peptide chain release factor class I/class IIPFAMPF00472RF-1coord: 5..62
score: 6.1
NoneNo IPR availableGENE3D3.30.160.200no descriptioncoord: 1..39
score: 2.8
NoneNo IPR availablePANTHERPTHR11075PEPTIDE CHAIN RELEASE FACTORcoord: 1..81
score: 1.8
NoneNo IPR availablePANTHERPTHR11075:SF12IMMATURE COLON CARCINOMA TRANSCRIPT 1 (DIGESTION SUBSTRACTION 1) (DS- 1)coord: 1..81
score: 1.8

Sequences
The following sequences are available for this feature:

contig sequence

>Pisum_sativum_v1_Contig859 ID=Pisum_sativum_v1_Contig859; Name=Pisum_sativum_v1_Contig859; organism=Pisum sativum; type=contig; length=501bp
TAACAAGGATGGAGAGCTTGTGATTACTTCAACCAAAACTAGAACACAGA
AGGGTAATATTGATGATGCTTTGGCAAAGCTTCAGGAAATCATTGATGCA
GCGTCTTATGTCCCACCACCTCCCTCAGAAGAGCAAAAGAAGAAAATCGC
AAAGTTGGCTGCTATAGGAGAGCACAAACGCCTTAAAAGTAAGAAAGTGC
AATCAGATAAGAAGGCTCAAAGAAGAAGTAAAAGTAGTTGGGACTAATGT
ATTGATTTTCCAGAATCTTTAAATTATTTATCATCTTAGGTACAAAAGCA
CAACAATCCTTTGATACAACCATAATTGAATACATACACATCAAGATGAA
TGGTTGAAGAAAACCAAGTTAAAACATTAATCAACAGGAAGGATATTTTC
AAAGTGATTTATGGCTGTATAGTGTTGTTCATAATTGTGACGTAGCTACG
ATTTAATGCAATAGAAAAATTTCTAATTGAAGTGCTATATTGCTTTTATC
T
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: Molecular Function
TermDefinition
GO:0003747translation release factor activity
Vocabulary: Biological Process
TermDefinition
GO:0006415translational termination
Vocabulary: INTERPRO
TermDefinition
IPR000352Pep_chain_release_fac_I