Pisum_sativum_v1_Contig99

Contig Overview
NamePisum_sativum_v1_Contig99
Unique NamePisum_sativum_v1_Contig99
Typecontig
OrganismPisum sativum (pea)
Sequence length766
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
FG531694ESTFG531694:1..483 +Pisum sativum unigene v1n/a
FG536972ESTFG536972:188..639 +Pisum sativum unigene v1n/a
FG530344ESTFG530344:348..766 +Pisum sativum unigene v1n/a
Unigenes
This contig is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Pisum sativum unigene v1Pisum sativum unigene v1contig
Analyses
This contig is derived from or has results from the following analyses
Analysis NameDate Performed
Pisum sativum unigene v12010-12-27
Homology Analysis: Pisum sativum unigene v1 vs Trembl2010-12-28
Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide2011-02-03
InterProScan analysis for Pisum sativum unigene v12010-12-29
Relationships

The following EST feature(s) are a part of this contig:

Feature NameUnique NameSpeciesType
FG531694FG531694Pisum sativumEST
FG536972FG536972Pisum sativumEST
FG530344FG530344Pisum sativumEST


Homology
BLAST of Pisum_sativum_v1_Contig99 vs. TrEMBL
Match: C6TKA5_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 8.860e-18
Identity = 49/94 (52.13%), Postives = 57/94 (60.64%), Query Frame = 2
Query:   92 RAISNEFNDXXXXXXXXXXXXXXXXXXXXXXXXXGMLLSMYASVTGIVPNSDNQSKVSGLIIEKGKKAVEKFEYDTTQMTILEVCNDIWKTISD 373
            RAI +EFND                          M+LSMYASVT IVPN D QSK+SG I+EK K AVEKFEYDT+ MT L++CN IWK IS+
Sbjct:  108 RAIGDEFNDLEQQWISVQEQKKTIQTIEKNKQRTQMVLSMYASVTNIVPNLDEQSKISGYIVEKDKNAVEKFEYDTSNMTALDICNGIWKIISE 201          
BLAST of Pisum_sativum_v1_Contig99 vs. TrEMBL
Match: B9IGF0_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_825370 PE=4 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.789e-10
Identity = 30/57 (52.63%), Postives = 44/57 (77.19%), Query Frame = 2
Query:  200 LLSMYASVTGIVPNSDNQSKVSGLIIEKGKKAVEKFEYDTTQMTILEVCNDIWKTIS 370
            +LSMYASVT I+P+ D+ SK+SG I+ +  KAVEKFE+D T+++  E+C  IW+ I+
Sbjct:  143 MLSMYASVTNIIPDLDDHSKISGHIVHRDNKAVEKFEFDPTKISSFEICQSIWEMIN 199          
BLAST of Pisum_sativum_v1_Contig99 vs. TrEMBL
Match: B9I3Z9_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_570350 PE=4 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.789e-10
Identity = 30/58 (51.72%), Postives = 43/58 (74.14%), Query Frame = 2
Query:  194 GMLLSMYASVTGIVPNSDNQSKVSGLIIEKGKKAVEKFEYDTTQMTILEVCNDIWKTI 367
            G +LSMYASVT I+P+ D+ SK+SG I+ +  KA EKFE+D T+++  E+C  IW+ I
Sbjct:   32 GRMLSMYASVTNIIPDLDDHSKISGHIVHRDNKAAEKFEFDPTKISSFEICQSIWEMI 89          
BLAST of Pisum_sativum_v1_Contig99 vs. TrEMBL
Match: A9PBN1_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.789e-10
Identity = 30/57 (52.63%), Postives = 44/57 (77.19%), Query Frame = 2
Query:  200 LLSMYASVTGIVPNSDNQSKVSGLIIEKGKKAVEKFEYDTTQMTILEVCNDIWKTIS 370
            +LSMYASVT I+P+ D+ SK+SG I+ +  KAVEKFE+D T+++  E+C  IW+ I+
Sbjct:  143 MLSMYASVTNIIPDLDDHSKISGHIVHRDNKAVEKFEFDPTKISSFEICQSIWEMIN 199          
BLAST of Pisum_sativum_v1_Contig99 vs. TrEMBL
Match: Q67XT3_ARATH (Putative uncharacterized protein At3g08880 OS=Arabidopsis thaliana GN=At3g08880 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 5.206e-10
Identity = 27/56 (48.21%), Postives = 43/56 (76.79%), Query Frame = 2
Query:  203 LSMYASVTGIVPNSDNQSKVSGLIIEKGKKAVEKFEYDTTQMTILEVCNDIWKTIS 370
            LSMYASVT ++P+ D+ SK+SG ++++ K+ +EKF+++T +MT  E CN IW  I+
Sbjct:  144 LSMYASVTNVIPDIDDPSKISGYMVDREKRLIEKFQFETNKMTAYETCNSIWSIIN 199          
BLAST of Pisum_sativum_v1_Contig99 vs. TrEMBL
Match: D7L7N7_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_478191 PE=4 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.881e-10
Identity = 27/56 (48.21%), Postives = 42/56 (75.00%), Query Frame = 2
Query:  203 LSMYASVTGIVPNSDNQSKVSGLIIEKGKKAVEKFEYDTTQMTILEVCNDIWKTIS 370
            LSMYASVT ++P+ D  SK+SG ++++ K+ +EKF+++T +MT  E CN IW  I+
Sbjct:  151 LSMYASVTKVIPDIDGPSKISGYMVDREKRVIEKFQFETNKMTAYETCNSIWSIIN 206          
BLAST of Pisum_sativum_v1_Contig99 vs. TrEMBL
Match: B6SH44_MAIZE (Putative uncharacterized protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 1.852e-7
Identity = 26/55 (47.27%), Postives = 41/55 (74.55%), Query Frame = 2
Query:  203 LSMYASVTGIVPNSDNQSKVSGLIIEKGKKAVEKFEYDTTQMTILEVCNDIWKTI 367
            LSM  SVT I+PN ++Q KVSG I+++ +K +EKFE++ T   + E+C+++WK I
Sbjct:  145 LSMCLSVTNIIPNLEDQDKVSGYIVDQNRKKIEKFEFENTTPPV-EICDELWKKI 198          
BLAST of Pisum_sativum_v1_Contig99 vs. TrEMBL
Match: C5Y983_SORBI (Putative uncharacterized protein Sb06g017895 (Fragment) OS=Sorghum bicolor GN=Sb06g017895 PE=4 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 2.418e-7
Identity = 27/56 (48.21%), Postives = 42/56 (75.00%), Query Frame = 2
Query:  200 LLSMYASVTGIVPNSDNQSKVSGLIIEKGKKAVEKFEYDTTQMTILEVCNDIWKTI 367
            LLSM  SVT +VPN ++Q KVSG II++  + +EKFE++ T+  + E+C+++WK I
Sbjct:   46 LLSMCMSVTNVVPNLEDQDKVSGKIIDQNSRRMEKFEFENTKPPV-EICDELWKKI 100          
BLAST of Pisum_sativum_v1_Contig99 vs. TAIR peptide
Match: AT3G08880.1 (| Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G01570.1); Has 177 Blast hits to 175 proteins in 60 species: Archae - 4; Bacteria - 33; Metazoa - 18; Fungi - 11; Plants - 59; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink). | chr3:2703169-2704165 FORWARD LENGTH=201)

HSP 1 Score: 68.9366 bits (167), Expect = 3.401e-12
Identity = 27/56 (48.21%), Postives = 43/56 (76.79%), Query Frame = 2
Query:  203 LSMYASVTGIVPNSDNQSKVSGLIIEKGKKAVEKFEYDTTQMTILEVCNDIWKTIS 370
            LSMYASVT ++P+ D+ SK+SG ++++ K+ +EKF+++T +MT  E CN IW  I+
Sbjct:  144 LSMYASVTNVIPDIDDPSKISGYMVDREKRLIEKFQFETNKMTAYETCNSIWSIIN 199          
BLAST of Pisum_sativum_v1_Contig99 vs. TAIR peptide
Match: AT5G01570.1 (| Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G08880.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:221367-222798 FORWARD LENGTH=201)

HSP 1 Score: 51.2174 bits (121), Expect = 7.340e-7
Identity = 22/51 (43.14%), Postives = 36/51 (70.59%), Query Frame = 2
Query:  203 LSMYASVTGIVPNSDNQSKVSGLIIEKGKKAVEKFEYDTTQMT-ILEVCND 352
            L MYASVT ++PN D+  K SG ++ + K+ ++KFE+D+ + T + E CN+
Sbjct:  131 LPMYASVTRVIPNIDDSLKTSGYMVGRDKRLMDKFEFDSNKSTSVYETCNE 181          
The following BLAST results are available for this feature:
BLAST of Pisum_sativum_v1_Contig99 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl)
Total hits: 8
Match NameE-valueIdentityDescription
C6TKA5_SOYBN8.860e-1852.13Putative uncharacterized protein OS=Glycine max PE... [more]
B9IGF0_POPTR1.789e-1052.63Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
B9I3Z9_POPTR1.789e-1051.72Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
A9PBN1_POPTR1.789e-1052.63Putative uncharacterized protein OS=Populus tricho... [more]
Q67XT3_ARATH5.206e-1048.21Putative uncharacterized protein At3g08880 OS=Arab... [more]
D7L7N7_ARALY8.881e-1048.21Putative uncharacterized protein OS=Arabidopsis ly... [more]
B6SH44_MAIZE1.852e-747.27Putative uncharacterized protein OS=Zea mays PE=2 ... [more]
C5Y983_SORBI2.418e-748.21Putative uncharacterized protein Sb06g017895 (Frag... [more]
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BLAST of Pisum_sativum_v1_Contig99 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide)
Total hits: 2
Match NameE-valueIdentityDescription
AT3G08880.13.401e-1248.21| Symbols: | unknown protein; BEST Arabidopsis th... [more]
AT5G01570.17.340e-743.14| Symbols: | unknown protein; BEST Arabidopsis th... [more]
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InterPro
Analysis Name: InterProScan analysis for Pisum sativum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 5..30
score: NAcoord: 40..64
score
NoneNo IPR availableSEGsegsegcoord: 20..35
score: NAcoord: 43..78
score

Sequences
The following sequences are available for this feature:

contig sequence

>Pisum_sativum_v1_Contig99 ID=Pisum_sativum_v1_Contig99; Name=Pisum_sativum_v1_Contig99; organism=Pisum sativum; type=contig; length=766bp
ATCCAAGACTGTTGCTGATGCAGAACTAGAGCTTCTGCAGAGAGAATTGG
ATGAAGAACTTGAAAAAGAACGCTTGTTTAAAGAAGAGTTTAGAGCCATT
AGCAATGAGTTCAATGATCTAGAACAGCAACAGATTTCTATCAAAGAGCA
GAAAAAGAAGTTACTGAAACTCGAGCAAGAAAAGCAGAAGGAAGGGATGC
TGCTTTCAATGTATGCTTCTGTCACCGGTATTGTTCCAAACTCGGATAAT
CAATCAAAGGTTTCAGGCTTAATTATTGAAAAGGGAAAAAAAGCAGTGGA
GAAATTTGAATACGACACGACACAGATGACGATCCTTGAAGTATGCAACG
ACATCTGGAAAACAATAAGTGATTGATGCATGTAAAAAATGCCTCTGTTG
GATGATATTTGCAATATTAGTAATTTCTCATTCTGAGTGCCGCCATGTTA
GGAATCCAACAATTCATTTATTTATGAATGATGATTTAAATCTTAGTGTT
GATATTGAGTGGTAAACTACCAAGTTTCGTTGGTGTGTATTTCATGTGAA
AATTTAAGTACTATGAATCTTCTCATAGTTGGCTCCACCTGTTATATAAG
AGACTGTAGTTTTGAATGGTAATGCCATGCTTGTTCAATAGAGTTTTGAA
TTCTAGCTAAGTAAATATTGTCAAGGCTTGGAGTTTGAATTCTTGTGATA
TGAATTTATAAACTTTTGATGATATGATGTACTTCACCCTTGTGTATATG
AATCATCCAATCCATT
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