Pisum_sativum_v1_Contig999

Contig Overview


Name	Pisum_sativum_v1_Contig999
Unique Name	Pisum_sativum_v1_Contig999
Type	contig
Organism	Pisum sativum (pea)
Sequence length	843

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
FG530112	EST	FG530112:1..666 +	Pisum sativum unigene v1	n/a
FG538488	EST	FG538488:221..843 +	Pisum sativum unigene v1	n/a

Unigenes

This contig is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Pisum sativum unigene v1	Pisum sativum unigene v1	contig

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Pisum sativum unigene v1	2010-12-27
Homology Analysis: Pisum sativum unigene v1 vs Trembl	2010-12-28
Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide	2011-02-03
InterProScan analysis for Pisum sativum unigene v1	2010-12-29

Relationships

The following EST feature(s) are a part of this contig:


Feature Name	Unique Name	Species	Type
FG530112	FG530112	Pisum sativum	EST
FG538488	FG538488	Pisum sativum	EST

Homology

[Close]

BLAST of Pisum_sativum_v1_Contig999 vs. TrEMBL
Match: A5BNC8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_009619 PE=4 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 7.568e-40
Identity = 84/137 (61.31%), Postives = 105/137 (76.64%), Query Frame = 1

Query:    4 ALTHSEDWKALIADAKSRNCYMDTESLPKDFLVPKGAVYTPLPGKAPLNMRGMRSGGPRYNRAMEMHMESRVGAQSEDDERMNGASVSSRNGNHRPPRYLTENSLDDL---GDKSRDAWQHGIQKRQGSTGTMAKRD 405
            AL  S+DW ALI+DA++R+CY+D +SLPK+FLVPKG  Y PL GK   NMRG+RS GPR+ R ++MH+ES+ G  SEDDE+ N AS+ SRNGN+RP +   ENSLDD     DKSRDAWQ+GIQK+Q S G +AKRD
Sbjct: 1273 ALMQSDDWAALISDARARSCYLDMDSLPKEFLVPKGPTYGPLSGKVSSNMRGLRSAGPRH-RQLDMHVESKSGTPSEDDEKSN-ASLISRNGNYRPLKPTMENSLDDFDQSADKSRDAWQYGIQKKQSSAGVVAKRD 1407

[Close]

BLAST of Pisum_sativum_v1_Contig999 vs. TrEMBL
Match: B9RJG9_RICCO (Splicing endonuclease positive effector sen1, putative OS=Ricinus communis GN=RCOM_1034260 PE=4 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 2.785e-34
Identity = 80/137 (58.39%), Postives = 99/137 (72.26%), Query Frame = 1

Query:    4 ALTHSEDWKALIADAKSRNCYMDTESLPKDFLVPKGAVYTPLPGKAPLNMRGMRSGGPRYNRAMEMHMESRVGAQSEDDERMNGASVSSRNGNHRPPRYLTENSLDDL---GDKSRDAWQHGIQKRQGSTGTMAKRD 405
            +L  S+DW ALI DAK+RNCYMD ESLPK+F V KG       GK   N RG R GGPR+ R+M++HME+R G  SEDD+  +GA V SRNGN+RP + L +NSLDD    GDKSRDAWQ+GIQK+Q S+G + KR+
Sbjct: 1222 SLVKSDDWAALIDDAKARNCYMDMESLPKEFFVSKGN-----QGKGSSNTRGSRLGGPRH-RSMDLHMEARSGTPSEDDD-SSGAPVISRNGNYRPFKPLMDNSLDDFDQSGDKSRDAWQYGIQKKQSSSGFVGKRE 1351

[Close]

BLAST of Pisum_sativum_v1_Contig999 vs. TrEMBL
Match: B9H754_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_716529 PE=4 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.058e-33
Identity = 78/136 (57.35%), Postives = 99/136 (72.79%), Query Frame = 1

Query:    4 ALTHSEDWKALIADAKSRNCYMDTESLPKDFLVPKGAVYTPLPGKAPLNMRGMRSGGPRYNRAMEMHMESRVGAQSEDDERMNGASVSSRNGNHRPPRYLTENSLDDL---GDKSRDAWQHGIQKRQGSTGTMAKR 402
            +L  S+DW AL+ADAK+RNCYM+ +SLPKDF V KG +     GK   N+RG+R GGPR+ R+ +MHMESR G  SEDDE  +GASV SRNG+  P +   +NSLDD    GD+SRDAWQ+GIQK+QGS+  + KR
Sbjct: 1017 SLVQSDDWSALVADAKARNCYMNMDSLPKDFFVLKGTL-----GKGSSNVRGLRLGGPRH-RSFDMHMESRSGTPSEDDEN-SGASVISRNGSFGPFKPPMDNSLDDFDQSGDRSRDAWQYGIQKKQGSSAVVGKR 1145

[Close]

BLAST of Pisum_sativum_v1_Contig999 vs. TrEMBL
Match: Q9SZW3_ARATH (Putative uncharacterized protein AT4g30100 OS=Arabidopsis thaliana GN=F6G3.130 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 8.679e-28
Identity = 74/137 (54.01%), Postives = 91/137 (66.42%), Query Frame = 1

Query:    4 ALTHSEDWKALIADAKSRNCYMDTESLPKDFLVPKGAVYTPLPGKAPLNMRGMRSGGPRYNRAMEMHMESRVGAQSEDDERMNGASVSSRNGNHRPPRYLTENSLDDL---GDKSRDAWQHGIQKRQGSTGTMAKRD 405
            AL   EDW ALI DAK+RNC+M+ ESLPKDF VPK   + P   KAP N RG RSGGPR  R+++MH ESR G  SEDD++++  +   RNGN R      ENS+DD    GD+ RDAWQHGIQ+RQ     + +RD
Sbjct: 1186 ALMKCEDWAALITDAKARNCFMEMESLPKDFPVPKVPSFIP---KAP-NARGFRSGGPR-TRSIDMHPESRSGTPSEDDKKLS-TTTFPRNGNSR-----RENSVDDSDPPGDRYRDAWQHGIQRRQNFGRPLGRRD 1311

[Close]

BLAST of Pisum_sativum_v1_Contig999 vs. TrEMBL
Match: Q0WLI5_ARATH (Putative uncharacterized protein At4g30100 (Fragment) OS=Arabidopsis thaliana GN=At4g30100 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 8.679e-28
Identity = 74/137 (54.01%), Postives = 91/137 (66.42%), Query Frame = 1

Query:    4 ALTHSEDWKALIADAKSRNCYMDTESLPKDFLVPKGAVYTPLPGKAPLNMRGMRSGGPRYNRAMEMHMESRVGAQSEDDERMNGASVSSRNGNHRPPRYLTENSLDDL---GDKSRDAWQHGIQKRQGSTGTMAKRD 405
            AL   EDW ALI DAK+RNC+M+ ESLPKDF VPK   + P   KAP N RG RSGGPR  R+++MH ESR G  SEDD++++  +   RNGN R      ENS+DD    GD+ RDAWQHGIQ+RQ     + +RD
Sbjct:  341 ALMKCEDWAALITDAKARNCFMEMESLPKDFPVPKVPSFIP---KAP-NARGFRSGGPR-TRSIDMHPESRSGTPSEDDKKLS-TTTFPRNGNSR-----RENSVDDSDPPGDRYRDAWQHGIQRRQNFGRPLGRRD 466

[Close]

BLAST of Pisum_sativum_v1_Contig999 vs. TrEMBL
Match: Q8W5K9_ORYSA (Putative DNA2-NAM7 helicase family protein OS=Oryza sativa GN=OSJNBa0079B05.7 PE=4 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.536e-16
Identity = 58/131 (44.27%), Postives = 79/131 (60.31%), Query Frame = 1

Query:    4 ALTHSEDWKALIADAKSRNCYMDTESLPKDFLVPKGAVYTPLPGK-APLNMRGMRSGGPRYNRAMEMHMESRVGAQSEDDERMNGASVSSRNGNHRPPRYLTENSLDDL---GDKSRDAWQHGIQKRQGST 384
            AL  SEDW  LIADAK+R C+MD +++PKDFL  K    +  PG+    N+R MR+GGPR  R +EM  +SRV  + ++DER N      RNG++R        +LDDL   GD+SRD    G+ +R  S+
Sbjct: 1238 ALMQSEDWALLIADAKARKCFMDLDTIPKDFLAMK---ISNTPGRNTSNNIRNMRTGGPR-PRHLEMLPDSRVSMRPDEDERSNSV---PRNGSYR--------NLDDLGRPGDRSRDNLPFGMPRRPNSS 1353

[Close]

BLAST of Pisum_sativum_v1_Contig999 vs. TrEMBL
Match: Q7XH59_ORYSJ (Helicase SEN1, putative, expressed OS=Oryza sativa subsp. japonica GN=LOC_Os10g02930 PE=4 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 1.536e-16
Identity = 58/131 (44.27%), Postives = 79/131 (60.31%), Query Frame = 1

Query:    4 ALTHSEDWKALIADAKSRNCYMDTESLPKDFLVPKGAVYTPLPGK-APLNMRGMRSGGPRYNRAMEMHMESRVGAQSEDDERMNGASVSSRNGNHRPPRYLTENSLDDL---GDKSRDAWQHGIQKRQGST 384
            AL  SEDW  LIADAK+R C+MD +++PKDFL  K    +  PG+    N+R MR+GGPR  R +EM  +SRV  + ++DER N      RNG++R        +LDDL   GD+SRD    G+ +R  S+
Sbjct:   65 ALMQSEDWALLIADAKARKCFMDLDTIPKDFLAMK---ISNTPGRNTSNNIRNMRTGGPR-PRHLEMLPDSRVSMRPDEDERSNSV---PRNGSYR--------NLDDLGRPGDRSRDNLPFGMPRRPNSS 180

[Close]

BLAST of Pisum_sativum_v1_Contig999 vs. TrEMBL
Match: B8BFH0_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_32578 PE=4 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.536e-16
Identity = 58/131 (44.27%), Postives = 79/131 (60.31%), Query Frame = 1

Query:    4 ALTHSEDWKALIADAKSRNCYMDTESLPKDFLVPKGAVYTPLPGK-APLNMRGMRSGGPRYNRAMEMHMESRVGAQSEDDERMNGASVSSRNGNHRPPRYLTENSLDDL---GDKSRDAWQHGIQKRQGST 384
            AL  SEDW  LIADAK+R C+MD +++PKDFL  K    +  PG+    N+R MR+GGPR  R +EM  +SRV  + ++DER N      RNG++R        +LDDL   GD+SRD    G+ +R  S+
Sbjct: 1238 ALMQSEDWALLIADAKARKCFMDLDTIPKDFLAMK---ISNTPGRNTSNNIRNMRTGGPR-PRHLEMLPDSRVSMRPDEDERSNSV---PRNGSYR--------NLDDLGRPGDRSRDNLPFGMPRRPNSS 1353

[Close]

BLAST of Pisum_sativum_v1_Contig999 vs. TrEMBL
Match: A3C225_ORYSJ (Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_30554 PE=4 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.536e-16
Identity = 58/131 (44.27%), Postives = 79/131 (60.31%), Query Frame = 1

Query:    4 ALTHSEDWKALIADAKSRNCYMDTESLPKDFLVPKGAVYTPLPGK-APLNMRGMRSGGPRYNRAMEMHMESRVGAQSEDDERMNGASVSSRNGNHRPPRYLTENSLDDL---GDKSRDAWQHGIQKRQGST 384
            AL  SEDW  LIADAK+R C+MD +++PKDFL  K    +  PG+    N+R MR+GGPR  R +EM  +SRV  + ++DER N      RNG++R        +LDDL   GD+SRD    G+ +R  S+
Sbjct: 1238 ALMQSEDWALLIADAKARKCFMDLDTIPKDFLAMK---ISNTPGRNTSNNIRNMRTGGPR-PRHLEMLPDSRVSMRPDEDERSNSV---PRNGSYR--------NLDDLGRPGDRSRDNLPFGMPRRPNSS 1353

[Close]

BLAST of Pisum_sativum_v1_Contig999 vs. TrEMBL
Match: C5WPU7_SORBI (Putative uncharacterized protein Sb01g026860 OS=Sorghum bicolor GN=Sb01g026860 PE=4 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 2.217e-15
Identity = 56/133 (42.11%), Postives = 79/133 (59.40%), Query Frame = 1

Query:    4 ALTHSEDWKALIADAKSRNCYMDTESLPKDFLVPKGAVYTPLPGK-APLNMRGMRSGGPRYNRAMEMHMESRVG--AQSEDDERMNGASVSSRNGNHRPPRYLTENSLDDL---GDKSRDAWQHGIQKRQGST 384
            AL  SEDW +LIADAK+R C+MD +S+PKDFL  K  V +  PG+ +  N+R MR+GG    R ++M  E R G   + ++DER+N      RNG++R        +LDD    GD+ RD  Q G+ +R  S+
Sbjct:  247 ALMQSEDWASLIADAKARKCFMDLDSIPKDFLPMK--VPSNTPGRNSSNNIRNMRTGGGPRPRHLDMFSEPRAGMNMRPDEDERLNSV---PRNGSYR--------NLDDFGRPGDRPRDNLQFGVPRRPNSS 366

[Close]

BLAST of Pisum_sativum_v1_Contig999 vs. TAIR peptide
Match: AT4G30100.1 (| Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr4:14714191-14719335 FORWARD LENGTH=1311)

HSP 1 Score: 128.257 bits (321), Expect = 5.459e-30
Identity = 74/137 (54.01%), Postives = 91/137 (66.42%), Query Frame = 1

Query:    4 ALTHSEDWKALIADAKSRNCYMDTESLPKDFLVPKGAVYTPLPGKAPLNMRGMRSGGPRYNRAMEMHMESRVGAQSEDDERMNGASVSSRNGNHRPPRYLTENSLDDL---GDKSRDAWQHGIQKRQGSTGTMAKRD 405
            AL   EDW ALI DAK+RNC+M+ ESLPKDF VPK   + P   KAP N RG RSGGPR  R+++MH ESR G  SEDD++++  +   RNGN R      ENS+DD    GD+ RDAWQHGIQ+RQ     + +RD
Sbjct: 1186 ALMKCEDWAALITDAKARNCFMEMESLPKDFPVPKVPSFIP---KAP-NARGFRSGGPR-TRSIDMHPESRSGTPSEDDKKLS-TTTFPRNGNSR-----RENSVDDSDPPGDRYRDAWQHGIQRRQNFGRPLGRRD 1311

[Close]

BLAST of Pisum_sativum_v1_Contig999 vs. TAIR peptide
Match: AT2G19120.1 (| Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr2:8287036-8291802 REVERSE LENGTH=1090)

HSP 1 Score: 56.9954 bits (136), Expect = 1.546e-8
Identity = 24/42 (57.14%), Postives = 32/42 (76.19%), Query Frame = 1

Query:    4 ALTHSEDWKALIADAKSRNCYMDTESLPKDFLVPKGAVYTPL 129
            AL  SEDW ALI+DA+ RNC+M+ +SLP DF +PK + Y P+
Sbjct: 1023 ALMKSEDWAALISDARGRNCFMEMDSLPLDFPIPKVSSYNPM 1064

The following BLAST results are available for this feature:

BLAST of Pisum_sativum_v1_Contig999 vs. TrEMBL
BLAST of Pisum_sativum_v1_Contig999 vs. TAIR peptide

BLAST of Pisum_sativum_v1_Contig999 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
A5BNC8_VITVI	7.568e-40	61.31	Putative uncharacterized protein OS=Vitis vinifera...	[more]
B9RJG9_RICCO	2.785e-34	58.39	Splicing endonuclease positive effector sen1, puta...	[more]
B9H754_POPTR	1.058e-33	57.35	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
Q9SZW3_ARATH	8.679e-28	54.01	Putative uncharacterized protein AT4g30100 OS=Arab...	[more]
Q0WLI5_ARATH	8.679e-28	54.01	Putative uncharacterized protein At4g30100 (Fragme...	[more]
Q8W5K9_ORYSA	1.536e-16	44.27	Putative DNA2-NAM7 helicase family protein OS=Oryz...	[more]
Q7XH59_ORYSJ	1.536e-16	44.27	Helicase SEN1, putative, expressed OS=Oryza sativa...	[more]
B8BFH0_ORYSI	1.536e-16	44.27	Putative uncharacterized protein OS=Oryza sativa s...	[more]
A3C225_ORYSJ	1.536e-16	44.27	Putative uncharacterized protein OS=Oryza sativa s...	[more]
C5WPU7_SORBI	2.217e-15	42.11	Putative uncharacterized protein Sb01g026860 OS=So...	[more]

BLAST of Pisum_sativum_v1_Contig999 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide)
Total hits: 2


Match Name	E-value	Identity	Description
AT4G30100.1	5.459e-30	54.01	\| Symbols: \| P-loop containing nucleoside triphos...	[more]
AT2G19120.1	1.546e-8	57.14	\| Symbols: \| P-loop containing nucleoside triphos...	[more]

InterPro

Analysis Name: InterProScan analysis for Pisum sativum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR10887	DNA2/NAM7 HELICASE FAMILY	coord: 2..92 score: 6.8
None	No IPR available	PANTHER	PTHR10887:SF27	SPLICING ENDONUCLEASE POSITIVE EFFECTOR SEN1	coord: 2..92 score: 6.8
None	No IPR available	SEG	seg	seg	coord: 52..63 score

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>Pisum_sativum_v1_Contig999 ID=Pisum_sativum_v1_Contig999; Name=Pisum_sativum_v1_Contig999; organism=Pisum sativum; type=contig; length=843bp
TATGCACTGACACATTCCGAGGATTGGAAAGCGTTGATTGCTGATGCAAA
ATCCCGAAATTGCTACATGGACACGGAGTCTCTTCCCAAGGACTTTTTGG
TGCCTAAGGGAGCTGTTTACACACCATTGCCTGGTAAGGCACCCTTGAAT
ATGAGGGGTATGAGATCAGGTGGGCCAAGATATAATAGAGCAATGGAGAT
GCATATGGAATCCAGAGTGGGAGCACAATCTGAAGATGACGAGAGGATGA
ATGGCGCTTCAGTAAGCTCCAGAAATGGGAACCATCGTCCACCACGTTAT
TTAACAGAGAACTCCTTAGATGATTTGGGTGATAAATCCAGAGATGCCTG
GCAGCATGGCATACAGAAGAGGCAGGGTTCAACTGGAACCATGGCAAAGA
GAGATGTATAGCTTTTGTGCTTTATCTGCAGATTCTTCTTGTGCAGCAAA
ACCTTTGGTGGTGCGGGAGTTCATGTACTATTTGATTTCGTCATTTCATG
ATCTCATCCCCCGGTCCAGCGTCACCGAAAGCTATCGGCCGGGGGGGCTT
TCGGGGATGCTGCATGAGCCACAGAGAGCATGTAACATGGATAAGCCAAC
ATTCTTGCATTTGTACTAATGCTTGTGTTGTTCTAGCCATTTTGTGGACA
TAGCTGCTTGGATGTGTTGGGGGAAAGACTGCAGACATTTGAATGAAGAC
CAGGGTGGAGGATCGAAAATACTCAATTTTGTATCAACATGAAAGGAAAC
AAGTGCACACAATATTATGGATCTTAGGAGGCTGTTTGCTGGGCAAATTG
TCTTTGTACATAGCAACAATGTTGTAGCAAATTGTTTCTTTCA

Search form

Pisum_sativum_v1_Contig999