GWAS0000039 | PulseDB

Genome Location

GWAS Overview


GWAS Label	GWAS0000039 [ MapViewer ]
Published Symbol	Length-Pv08
Trait Name	Seed length
Trait Alias	N/A
GWAS Marker	Pv_S1_325844152
GWAS Study	Bean-Seed_size_and_shape-Giordani_2022
Genome Assembly	Phaseolus vulgaris G19833 genome v2.1
Statistical Mothod	best linear unbiased estimators
Experimental Model	multilocus mixed model
GWAS Panel	N/A
LOD	N/A
P Value	3.61E-6
R2	N/A
Unique key	4694-SDLG-S1_325844152
Effect	0.69
MAF	0.07
Allele	T/C
PVE	5.94
Comments	N/A

Terms

The following terms have been associated with this GWAS:

Vocabulary: **Pulse Trait Ontology**
Term	Definition
156:Seed length	Seed length

Genome Location


Name	Type	Location	Analysis	MapViewer
Chr08	supercontig	Chr08:1797591..1797591	Phaseolus vulgaris G19833 genome v2.1	View

Publications


Year	Publication
2022	Giordani W, Gama HC, Chiorato AF, Garcia AAF, Vieira MLC. Genome-Wide Association Studies Dissect the Genetic Architecture of Seed Shape and Size in Common Bean.. G3 (Bethesda, Md.). 2022 Feb 26.

Properties


Property Name	Value
Unique key	4694-SDLG-S1_325844152
Published symbol	Length-Pv08
Effect	0.69
MAF	0.07
Allele	T/C
P value	3.61E-6
PVE	5.94
Experimental model	multilocus mixed model
Statistical method	best linear unbiased estimators